Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g01178 ATGGGAAACGCCGACTATGTGTACCCATCGGCGGCGGAAGGCGGCGAGAGCTTGCACAAGGCGGCGATTCCGCCGCCGCAGCCGTTCGTGAAGTCGCTGAAGAATTCTCTTAAGGAGACGTTCTTCCCAGACGACCCGCTCCGGCAGTTCAAGAACCAGCCGGCGAGGAGGAAGATTGTTCTGGGTTTGCAGTACTTCTTCCCTGTAGTGGAATGGGGGCCTCGTTATAATCCTGGGCTCCTGAAATCGGATCTCATCTCCGGTATCACCATTGCTAGCCTCGCCATTCCTCAGGGCATTAGCTACGCCAAGCTCGCTAACTTGCCCCCTATCCTCGGCCTCTATTCGAGTTTTATTCCGCCGCTGATATATGCAATGATGGGAAGCTCGAAGGATTTGGCTGTCGGAACGGTGGCGGTGGCGTCGCTTCTAATGGGCGCAATGTTAGGGGCGGACGTTAACGCCGCCCAAAATCCCACTCTTTATCTCCACCTTGCTTTCACCGCCACTTTCTTCGCCGGAGTATTCCAGGCCTCCTTAGGCCTCTTAAGATTAGGGTTCATCGTGGATTTTTTGTCACACGCCACCATTGTCGGGTTCATGGGCGGCGCTGCCACCGTGGTGTGCCTGCAACAGCTCAAAGGCATCCTTGGTCTCACCCATTTCACCCACGCCACCGATCTTGTTTCTGTTCTTCGCTCCGTTTTTTCTCAAATTCACGAGTGGAGATGGCAAAGTGGAGTATTGGGATGCGGTTTTCTGCTCTTCCTCCTGATCACCAAATACTTTAGTAAGAAAAAACCGAAATTCTTTTGGATATCAGCAATGGCGCCTTTAACGTCGGTGATTTTGGGAAGCCTTCTAGTGTTTCTCGCTCATGCGGAAAAGCACGGCGTTGAAGTGATTGGAGAATTGAAGAAAGGGCTAAATCCAGTGTCTATTACAGATTTGGTGTTGGTGTCACCTTATCTTTCCACAGCGATCAAAACTGGCATCATCACTGGCGTCATAGCTCTTGCGGAAGGAATAGCAGCAGGAAGAAGCTTTGCGATGTTCAAGCATTACAACATCGATGGCAACAAGGAAATGGTGGCTATTGGCACCATGAACATGGTCGGCTCTTGCTTCTCCTGCTATCTCACCACAGGCCCGTTTTCGCGATCGGCAGTGAACTACAATGCAGGATGCAAAACGGCGGTATCGAACGTGGTAATGGCGATTGCAGTGATGCTGACGCTGCTGTTCTTGACTCCTCTGTTCTACTACACTCCTATTGTTGTGCTTTCTTCTATCATCATTTCCGCCATGCTTGGCCTCATCGATTACGACGCCGCTATTCACTTGTGGAAGGTCGATAAGTTCGATTTCCTTGTCTGCATTGCCGCTTATGCTGGTGTTGTCTTTGCTAGTGTTGAAATTGGCTTGGTCATTGCGGTGGTGATATCTCTGCTAAGACTACTTTTGTTCGTTGCGAGGCCGAGGACACTCGTGCTTGGAAACCTTCCCAATTCCACGGTTTACAGGAACGTCGAGCAATACCCGAATGCCGATAATGTTCCCGGCATTCTCATACTTGAGATCGACGCTCCCATTTACTTTGCTAATTCCAGCTACTTGAGAGAAAGGATTATAAGGTGGGTTGATGAAGAGGAAGACAGGATAAAAGCATCCGGCGAAAGTACCTTACAATATGTAGTTCTGGACATGAGTGCTGTTGGCAACATTGATACGAGTGGAATAAGCATGTTTGAAGAGATCAAGAACATTTTAACTAGAAGGGGATTGAAGATGGTTTTGGCCAACCCTGGAGCTGAGGTGATGAAGAAGCTGGACAAGGGCAAGTTCATTGAAAGCCTCGGACACGAATGGATCTATCTTACTGTTGCTGAAGCTGTAGCAGCCTGCAACTATAGGCTTCACTCTTGCAAACCAAACCTTGTAACTGATGAGAAAGCAGAGCCATGGAACAATGTCTAA 1977 49.27 MGNADYVYPSAAEGGESLHKAAIPPPQPFVKSLKNSLKETFFPDDPLRQFKNQPARRKIVLGLQYFFPVVEWGPRYNPGLLKSDLISGITIASLAIPQGISYAKLANLPPILGLYSSFIPPLIYAMMGSSKDLAVGTVAVASLLMGAMLGADVNAAQNPTLYLHLAFTATFFAGVFQASLGLLRLGFIVDFLSHATIVGFMGGAATVVCLQQLKGILGLTHFTHATDLVSVLRSVFSQIHEWRWQSGVLGCGFLLFLLITKYFSKKKPKFFWISAMAPLTSVILGSLLVFLAHAEKHGVEVIGELKKGLNPVSITDLVLVSPYLSTAIKTGIITGVIALAEGIAAGRSFAMFKHYNIDGNKEMVAIGTMNMVGSCFSCYLTTGPFSRSAVNYNAGCKTAVSNVVMAIAVMLTLLFLTPLFYYTPIVVLSSIIISAMLGLIDYDAAIHLWKVDKFDFLVCIAAYAGVVFASVEIGLVIAVVISLLRLLLFVARPRTLVLGNLPNSTVYRNVEQYPNADNVPGILILEIDAPIYFANSSYLRERIIRWVDEEEDRIKASGESTLQYVVLDMSAVGNIDTSGISMFEEIKNILTRRGLKMVLANPGAEVMKKLDKGKFIESLGHEWIYLTVAEAVAACNYRLHSCKPNLVTDEKAEPWNNV 658
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9479063 9483823 - CmoCh17G011780.1 Cmo17g01178 401561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g01178 658 Gene3D STAS domain 492 639 IPR036513 -
Cmo17g01178 658 ProSiteProfiles STAS domain profile. 512 635 IPR002645 -
Cmo17g01178 658 CDD STAS_SulP_like_sulfate_transporter 513 628 - -
Cmo17g01178 658 PANTHER SULFATE TRANSPORTER 2 651 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cmo17g01178 658 PANTHER SLC26A/SULP TRANSPORTER-RELATED 2 651 - -
Cmo17g01178 658 SUPERFAMILY SpoIIaa-like 517 636 IPR036513 -
Cmo17g01178 658 TIGRFAM sulP: sulfate permease 68 631 IPR001902 GO:0015301|GO:0016020|GO:0055085
Cmo17g01178 658 Pfam Sulfate permease family 81 461 IPR011547 GO:0016021
Cmo17g01178 658 Pfam STAS domain 513 631 IPR002645 -
Cmo17g01178 658 ProSitePatterns SLC26A transporters signature. 110 131 IPR018045 GO:0008271|GO:0008272
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00647 Cmo-Chr8:4222627 Cmo17g01178 Cmo-Chr17:9479063 0 dispersed
Cmo10g00643 Cmo-Chr10:2947910 Cmo17g01178 Cmo-Chr17:9479063 0 dispersed
Cmo11g00595 Cmo-Chr11:2867566 Cmo17g01178 Cmo-Chr17:9479063 0 dispersed
Cmo15g00746 Cmo-Chr15:3662569 Cmo17g01178 Cmo-Chr17:9479063 0 dispersed
Cmo17g00784 Cmo-Chr17:7547412 Cmo17g01178 Cmo-Chr17:9479063 0 dispersed
Cmo14g01779 Cmo-Chr14:13719051 Cmo17g01178 Cmo-Chr17:9479063 0 wgd
Cmo17g01178 Cmo-Chr17:9479063 Cmo06g01389 Cmo-Chr6:10193827 0 wgd
Cmo17g01178 Cmo-Chr17:9479063 Cmo08g00320 Cmo-Chr8:1996246 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g01178 K17471 - csv:101222260 1194.87