Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g01183 ATGTTTTCCCCAACAATTATGTCCAATTCAACTTCCTTGTCTGATCAAGCTACCATCTTTTCCAATATTCACCACTCTCCACAAAAGCTCAAGAAGAAACGAAGCCTCCCCGGTAACCCAGACCCAGATGCAGAAGTGATAGCACTTTCACCAACAACACTTCTTGCAACAAATAGATTTGTGTGTGAAATTTGCAATAAGGGTTTCCAAAGGGATCAAAACTTGCAGCTACACAGAAGAGGCCACAAACTTCCATGGAAATTGAAGCAAAGAAGCAGCAAAGAAATGAAGAAGAAGGCGTATGTGTGCCCAGAGGAAGGTTGTGTTCATCATAACCCTTCAAGAGCATTAGGAGATCTCACAGGAATCAAAAAACATTACTCCAGAAAACATGGAGAAAAGAAATGGAAATGCCTTAAATGCTCCAAACTCTACGCTGTTCAATCTGATTGGAAAGCTCACTCCAAAACTTGTGGAACTAGAGAGTATAGATGTGACTGTGGAACCCTTTTCTCCAGGAAAGATAGGTTCCTAACCCATAGAGCTTTTTGTGATGCATTGGCGGAGGAGAGTGCACGGCTCTCGGCTAACCAATTGGCCATAGCTTCGGCCGCCTCAGGTGCCACGGGTGTTGACGTAAGCCTGTCTTCGACCACGGTTGCTCAATCTCTCTTTCCTTTTGGCAACCATTATCAGTTCTCGAATTCGCTAATACCGTCGTCTCCATCGTCACTGTCGTTGTCATCGTCGCAAACCCTTGTGTCCCTAAACCCTTGGAACCATCCCCTAAACCCTAACCCTAATCATACCCTTCAAATGATCAAGCCTGAAGACTCAAATTCTCACCATTTTCAACAAATTCCAAATTTGCCCCTCTCCGATGACTCCTCCAATAATAACAATTACCACCCTTTTGGTCTAATTCAAGATCACCACCACAAGGCGAGGTCATCCTCCTCCTCCTCCTCTTCCATGATAACCTCACCCTTTAGGAACCTCCACGTGTCGGTGCAACCGGCCTCAAATGTTGCCACGTCAGCTCACCTATCAGCCACAGCCCTACTACAAAAGGCCGCAACAGTTGGCATTGACGCTGCAAAATCAGGTCACCATCAGCCCGAGTCAGTGGGTCATATAACTCACTTCAACATCCCCGAGTTCCGCCCATCAAATCATATTAGCTCGCTGAGTCAACTCGGTCCAGACTACGCCACGTGGCAGAAGAGTGACCGGTTGACCAGGGACTTCCTCGGTCTTACCGGACATGGGAACGGCACCGGAAGTGGTTCCGGCAGCGGGGGATCGGTGCATGTTAGCATGATCGTTAAGGATATGCTAACGTACGCAGGTGGAATTGAGATGTTTAAGCCTCACAATAATAATAATAATAGTAATGGTTTTGGATATGGGGAGGCAGCTGCCAATGGAACTTGGGGAGACTGTTGA 1446 46.82 MFSPTIMSNSTSLSDQATIFSNIHHSPQKLKKKRSLPGNPDPDAEVIALSPTTLLATNRFVCEICNKGFQRDQNLQLHRRGHKLPWKLKQRSSKEMKKKAYVCPEEGCVHHNPSRALGDLTGIKKHYSRKHGEKKWKCLKCSKLYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDRFLTHRAFCDALAEESARLSANQLAIASAASGATGVDVSLSSTTVAQSLFPFGNHYQFSNSLIPSSPSSLSLSSSQTLVSLNPWNHPLNPNPNHTLQMIKPEDSNSHHFQQIPNLPLSDDSSNNNNYHPFGLIQDHHHKARSSSSSSSSMITSPFRNLHVSVQPASNVATSAHLSATALLQKAATVGIDAAKSGHHQPESVGHITHFNIPEFRPSNHISSLSQLGPDYATWQKSDRLTRDFLGLTGHGNGTGSGSGSGGSVHVSMIVKDMLTYAGGIEMFKPHNNNNNSNGFGYGEAAANGTWGDC 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9502242 9504755 + CmoCh17G011830.1 Cmo17g01183 401566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g01183 481 Pfam Zinc-finger double-stranded RNA-binding 60 83 IPR022755 -
Cmo17g01183 481 SUPERFAMILY beta-beta-alpha zinc fingers 59 156 IPR036236 -
Cmo17g01183 481 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
Cmo17g01183 481 MobiDBLite consensus disorder prediction 264 305 - -
Cmo17g01183 481 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 82 IPR013087 -
Cmo17g01183 481 MobiDBLite consensus disorder prediction 264 306 - -
Cmo17g01183 481 SMART c2h2final6 60 82 IPR013087 -
Cmo17g01183 481 SMART c2h2final6 101 131 IPR013087 -
Cmo17g01183 481 MobiDBLite consensus disorder prediction 24 43 - -
Cmo17g01183 481 Gene3D Classic Zinc Finger 93 184 - -
Cmo17g01183 481 Gene3D Classic Zinc Finger 59 83 - -
Cmo17g01183 481 PANTHER PROTEIN INDETERMINATE-DOMAIN 12 20 465 - -
Cmo17g01183 481 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 465 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo17g01183 Cmo-Chr17:9502242 Cmo14g00196 Cmo-Chr14:889620 5.55E-105 dispersed
Cmo17g01183 Cmo-Chr17:9502242 Cmo08g00317 Cmo-Chr8:1974557 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11434 PF12171 zf-C2H2_jaz 5.80E-05 CL0361 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g01183 K25870 - csv:101208253 658.677