Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g01190 ATGGCGAACAATCATTCCGAGACTCCCTCCGATGATTTCCTCGAGCAGATTCTTGGGATTTCCCCTTTCGGTTCGGCGGAGCAAGGGTTAGCTGGAACCGACGGCGGATTGGCAGGAGCTGCTGCTGCTGCTGCTGCGGCGGCTCACGGTCAGGCTCCGATGATGCTTCAACTTAGCTCCGGCGATGGAGGTGGCCACATCTCTACGATTGGAAGTGGAAGTGTCGGTGGTGCAGGGTTCCATGGCGGAACCCCTTTTCCTTTGGGGTTGAGCTTGGACCAAGGGAAGAGTGGGTTTCTTAAGGCTGAGGAAGCTTCTGGAAGTGGGAAGAGGTATTGTGGTGAGGTTGTTGATGTTCGAGCTTCATCTGTGAAAAATGTTTATCAAGGCCAACAAATGCATGCTACTATGGGTGCAGCACCGCATCCACCAACGATGCGCCCTAGGGTACGAGCAAGACGAGGACAGGCGACTGATCCACATAGCATTGCAGAGCGGTTACGAAGAGAAAGAATTGCAGAGAGAATCCGGGCTTTGCAGGAGCTTGTTCCGAGTGTCAATAAGACGGATAGAGCTGCAATGCTCGATGAAATAGTGGACTACGTAAAGTTTCTACGTCTCCAAGTAAAGGTTTTAAGCATGAGTAGATTGGGTGGAGCTGGTGCGGTGGCACCACTTGTAACGGATATTCCACTATCATCAGTTGAGGAAGAAGGAAGTGAGGGTGGTAGGAACCAACCTGCGTGGGAGAAGTGGTCGAACGATGGTACCGAGAGACAAGTTGCGAAGCTTATGGAAGAAAACGTGGGTTCTGCGATGCAATTCCTTCAATCGAAGGCACTCTGCATCATGCCCATCTCATTGGCTTCGGCGATTTATCACACGCAACCGCCCGATAGCTCGAGCATTGTGAAGCCAGAGAGTAATCCTCCTCCATAG 939 51.86 MANNHSETPSDDFLEQILGISPFGSAEQGLAGTDGGLAGAAAAAAAAAHGQAPMMLQLSSGDGGGHISTIGSGSVGGAGFHGGTPFPLGLSLDQGKSGFLKAEEASGSGKRYCGEVVDVRASSVKNVYQGQQMHATMGAAPHPPTMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGSEGGRNQPAWEKWSNDGTERQVAKLMEENVGSAMQFLQSKALCIMPISLASAIYHTQPPDSSSIVKPESNPPP 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9573292 9575747 + CmoCh17G011900.1 Cmo17g01190 401573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g01190 312 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 300 - -
Cmo17g01190 312 SMART finulus 162 211 IPR011598 GO:0046983
Cmo17g01190 312 PANTHER TRANSCRIPTION FACTOR UNE12-RELATED 7 300 - -
Cmo17g01190 312 Gene3D - 151 213 IPR036638 GO:0046983
Cmo17g01190 312 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 156 205 IPR011598 GO:0046983
Cmo17g01190 312 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 154 215 IPR036638 GO:0046983
Cmo17g01190 312 Pfam Helix-loop-helix DNA-binding domain 161 205 IPR011598 GO:0046983
Cmo17g01190 312 MobiDBLite consensus disorder prediction 136 160 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01008 Cmo-Chr11:5422138 Cmo17g01190 Cmo-Chr17:9573292 4.22E-95 dispersed
Cmo12g01174 Cmo-Chr12:10624309 Cmo17g01190 Cmo-Chr17:9573292 3.26E-48 dispersed
Cmo17g01190 Cmo-Chr17:9573292 Cmo08g00241 Cmo-Chr8:1463780 3.72E-22 dispersed
Cmo17g01190 Cmo-Chr17:9573292 Cmo11g00470 Cmo-Chr11:2301693 1.83E-60 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11436 PF00010 HLH 1.20E-07 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g01190 - - csv:101218718 498.434