Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g01197 ATGGAAGAGGTTGAAGATGCTAATAGGGAAGCTGTTGAGAGTGTTCATAAAGTATTGAATCTGTTGACTGTGACATCGCCTCAAGATCAGTCGAAGATTACGCGTTGTTTAATGACGGAAACTGGAGAGGCTGTGTTTAAGTTTAGGAAGGTTTTGTGTCTTCTTGATTCTGTTGGGTTGGGTCATGCAAGGGTCAGGAAAAAGAAGAAGATCATGAACTTTCATCTTGATTCCTCGCCTTCCCAATCAATGTTCTTAGAATCTTCTTCCCCTAATTGCAGAATGGACCTTCTCCAGGGGAGGAATTTGCAGATGGGTCCTCACCCATCTTTGGAATTGAACTCAAATGCCAAAAACTGTTCAATCCAACAGATTCAACCTCAATCTGCTGCTGTTTATCATCATCTGCTTCAGAACAGGGTGTTGTTGAATACTCAGCAGCCTGAAATGGGGTATCTTAGGAGCAATAGTGGTGTTAACTTGAATTTTGATAGCTCTAGCTGCACACAACACACAATGTCATCCACTAGGTCGTTTATGTCTTCCTTGAGCATTGATGGGAGTGTGGCAAACTTGGATGGGAGTGGCTTTCATTTGATCGGGACGCCTCGGTCTTCCGATCAGAATTCACGCCATAAAAGGAAGTGTTGTAGGAGAGGGGAAGATGGGAGTGTTAAATGTGGAAGCAGTGGGAGATGTCATTGCTCAAAGAAGAGGAAACATAGAGTGAAGCGGTCGATCAAGGTGCCTGCCATTAGTAACAAGCTTGCTGATATCCCTCCTGATGATTTCTCATGGAGGAAATATGGCCAAAAGCCAATCAAGGGCTCTCCTCACCCGAGAGGATACTATAAGTGCAGCAGCATGAGAGGTTGTCCAGCAAGGAAGCATGTCGAGCGGTGTCTCGAGGAACCTTCAATGCTCATCGTTACATATGAAGTGATTTTGATCTGTACTGGCATTGTCATGAAGGAAGCGGGCGAGAGCTTGAAAGGACCTAGACCTATTGTTTTCAAAGATAATGATTTTCAATCTAGAGAAGGAATTAACTCCCTTGAATTTGGAAGTAATCCCAGCAAAGAACATAAGGATAATCGGTTTGAGGATGAAGGGGAAAAGAATAATTCTTATAAGGCAACCGGACAACATGATCGGGGTGCTGTCAAGCGTGATAAGAATGCACGCATACCCCAGTCTAGATCAGTAGATTATAAGGTAAAGGAGATGACAGATCAACTGATTAGAGCCAGAGTCTACCTAAGTTTCGCCCCACCAGGTAGCAATTCTCATTTGACGAAAGAGTTAAGGCAACGAATCAAAGAGTTAGAACATGCAGTCGAGGAAGTTACTAAGGATTCAGCTCTGACAAAGAGTGCTTTGCAGAAAATGAAGAACATGGAGTCTTCATTAGTAAAAGCAGGCCATGCTTACCCAGACTGCTCGGCAATGTCTTCAAAGCTTCGAGCTATGACAGACAATGCTGAAGAGCAAGTTCGTATGCAAAAGAAACAAGTTACTTATCTTGTAAATCTTGCTGCAAGAACCACCCCTAAAGGCTTTCATTGTCTATCAATGCGACTGACTTCTGAATACTTCGCTTTGCCGCCACCTTCGGAGAGGGAGCTGCTTGAACAGAAAAAGTTGCTTCATGATACTAAGCTCTATCATTATGCTGTCTTCTCCGACAATGTTTTGGCTTGTGCTGTTGTTGTCAACTCCACTGTTTCAAGTGCTAAGGAACCGGAGAGAATTGTCTTCCATTTGGTGACCAATTCATTGAACTTGCCAGCAATGTCCATGTGGTTTTCACTAAATCCTATGGGAAGAGCCACAGTTGAGGTCTTGAGAATGGAGGACTTTGAGTGGCTGTCCAGGGAGTATGATTTAGGATGGAAGGTGCACAATTTTAGTGACCCAAGGTTTACTTCTGAACTCAACTATCTTCGGTTCTATCTGCCAAATATCTTCCCTTCACTGGATAAGGTCGTAGTTCTTGATCATGATGTGGTGGTGCAAAAGGATTTATCTGGTTTATGGCACGTTGATATGAAGGGGAAGGTCAATGGTGCTGTTGAAACTTGTCAAGAAAATGAGGCTTCTTTTCTACGGATGGATATGTTTATCAACTTCTCAGATCCACTGATTGCTGATGAATTCGACAGTAAGGCATGCACATGGGCGTTTGGAATGAACGTATTTGATCTTAGAAGGTGGAGGGAAGAAAATTTAACTGCTCGCTACCATGAATATCTTCGACTGAGTAATGAACGGCCAATCTTGAAGGGTGGAAGCTTGCCTTTGGGGTGGGTTACGTTCTATAACCAGACTACAGCAGTGGAGCGGCGGTGGCACATGCTCGGACTCGGTCATGACTCTACTGTGCCACCAGACGATATCGAGAAGGCAGCTGTTATACACTACAACGGTGCTTGGAAGCCATGGTTAGATATTGGATTTGGCGAGTACAAAGGTTTATGGAGCAAACATATGGACTTCGACAACCCATACTTGCAACAATGCAACATCCACGGCTAA 2535 43.83 MEEVEDANREAVESVHKVLNLLTVTSPQDQSKITRCLMTETGEAVFKFRKVLCLLDSVGLGHARVRKKKKIMNFHLDSSPSQSMFLESSSPNCRMDLLQGRNLQMGPHPSLELNSNAKNCSIQQIQPQSAAVYHHLLQNRVLLNTQQPEMGYLRSNSGVNLNFDSSSCTQHTMSSTRSFMSSLSIDGSVANLDGSGFHLIGTPRSSDQNSRHKRKCCRRGEDGSVKCGSSGRCHCSKKRKHRVKRSIKVPAISNKLADIPPDDFSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPSMLIVTYEVILICTGIVMKEAGESLKGPRPIVFKDNDFQSREGINSLEFGSNPSKEHKDNRFEDEGEKNNSYKATGQHDRGAVKRDKNARIPQSRSVDYKVKEMTDQLIRARVYLSFAPPGSNSHLTKELRQRIKELEHAVEEVTKDSALTKSALQKMKNMESSLVKAGHAYPDCSAMSSKLRAMTDNAEEQVRMQKKQVTYLVNLAARTTPKGFHCLSMRLTSEYFALPPPSERELLEQKKLLHDTKLYHYAVFSDNVLACAVVVNSTVSSAKEPERIVFHLVTNSLNLPAMSMWFSLNPMGRATVEVLRMEDFEWLSREYDLGWKVHNFSDPRFTSELNYLRFYLPNIFPSLDKVVVLDHDVVVQKDLSGLWHVDMKGKVNGAVETCQENEASFLRMDMFINFSDPLIADEFDSKACTWAFGMNVFDLRRWREENLTARYHEYLRLSNERPILKGGSLPLGWVTFYNQTTAVERRWHMLGLGHDSTVPPDDIEKAAVIHYNGAWKPWLDIGFGEYKGLWSKHMDFDNPYLQQCNIHG 844
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9602611 9611793 - CmoCh17G011970.1 Cmo17g01197 401580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g01197 844 SUPERFAMILY Nucleotide-diphospho-sugar transferases 555 842 IPR029044 -
Cmo17g01197 844 SMART WRKY_cls 260 320 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo17g01197 844 Pfam Glycosyl transferase family 8 522 817 IPR002495 GO:0016757
Cmo17g01197 844 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 557 834 IPR029044 -
Cmo17g01197 844 Pfam WRKY DNA -binding domain 262 313 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo17g01197 844 SUPERFAMILY WRKY DNA-binding domain 258 313 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo17g01197 844 ProSiteProfiles WRKY domain profile. 255 313 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo17g01197 844 MobiDBLite consensus disorder prediction 348 399 - -
Cmo17g01197 844 MobiDBLite consensus disorder prediction 357 399 - -
Cmo17g01197 844 Gene3D WRKY domain 239 313 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo17g01197 844 Coils Coil 432 452 - -
Cmo17g01197 844 Pfam Plant zinc cluster domain 213 258 IPR018872 -
Cmo17g01197 844 PANTHER GALACTURONOSYLTRANSFERASE 6-RELATED 320 843 - -
Cmo17g01197 844 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 320 843 IPR029993 GO:0047262
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00703 Cmo-Chr7:3171880 Cmo17g01197 Cmo-Chr17:9602611 4.71E-23 dispersed
Cmo08g00311 Cmo-Chr8:1911836 Cmo17g01197 Cmo-Chr17:9602611 1.79E-178 dispersed
Cmo17g01197 Cmo-Chr17:9602611 Cmo03g00636 Cmo-Chr3:5832382 1.36E-158 dispersed
Cmo19g00061 Cmo-Chr19:334750 Cmo17g01197 Cmo-Chr17:9602611 2.05E-111 dispersed
Cmo17g01197 Cmo-Chr17:9602611 Cmo02g01814 Cmo-Chr2:10274315 3.24E-73 wgd
Cmo17g01197 Cmo-Chr17:9602611 Cmo08g00309 Cmo-Chr8:1891000 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11439 PF01501 Glyco_transf_8 1.30E-69 CL0110 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g01197 K13648 - csv:101206067 879.396