Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo17g01197 | ATGGAAGAGGTTGAAGATGCTAATAGGGAAGCTGTTGAGAGTGTTCATAAAGTATTGAATCTGTTGACTGTGACATCGCCTCAAGATCAGTCGAAGATTACGCGTTGTTTAATGACGGAAACTGGAGAGGCTGTGTTTAAGTTTAGGAAGGTTTTGTGTCTTCTTGATTCTGTTGGGTTGGGTCATGCAAGGGTCAGGAAAAAGAAGAAGATCATGAACTTTCATCTTGATTCCTCGCCTTCCCAATCAATGTTCTTAGAATCTTCTTCCCCTAATTGCAGAATGGACCTTCTCCAGGGGAGGAATTTGCAGATGGGTCCTCACCCATCTTTGGAATTGAACTCAAATGCCAAAAACTGTTCAATCCAACAGATTCAACCTCAATCTGCTGCTGTTTATCATCATCTGCTTCAGAACAGGGTGTTGTTGAATACTCAGCAGCCTGAAATGGGGTATCTTAGGAGCAATAGTGGTGTTAACTTGAATTTTGATAGCTCTAGCTGCACACAACACACAATGTCATCCACTAGGTCGTTTATGTCTTCCTTGAGCATTGATGGGAGTGTGGCAAACTTGGATGGGAGTGGCTTTCATTTGATCGGGACGCCTCGGTCTTCCGATCAGAATTCACGCCATAAAAGGAAGTGTTGTAGGAGAGGGGAAGATGGGAGTGTTAAATGTGGAAGCAGTGGGAGATGTCATTGCTCAAAGAAGAGGAAACATAGAGTGAAGCGGTCGATCAAGGTGCCTGCCATTAGTAACAAGCTTGCTGATATCCCTCCTGATGATTTCTCATGGAGGAAATATGGCCAAAAGCCAATCAAGGGCTCTCCTCACCCGAGAGGATACTATAAGTGCAGCAGCATGAGAGGTTGTCCAGCAAGGAAGCATGTCGAGCGGTGTCTCGAGGAACCTTCAATGCTCATCGTTACATATGAAGTGATTTTGATCTGTACTGGCATTGTCATGAAGGAAGCGGGCGAGAGCTTGAAAGGACCTAGACCTATTGTTTTCAAAGATAATGATTTTCAATCTAGAGAAGGAATTAACTCCCTTGAATTTGGAAGTAATCCCAGCAAAGAACATAAGGATAATCGGTTTGAGGATGAAGGGGAAAAGAATAATTCTTATAAGGCAACCGGACAACATGATCGGGGTGCTGTCAAGCGTGATAAGAATGCACGCATACCCCAGTCTAGATCAGTAGATTATAAGGTAAAGGAGATGACAGATCAACTGATTAGAGCCAGAGTCTACCTAAGTTTCGCCCCACCAGGTAGCAATTCTCATTTGACGAAAGAGTTAAGGCAACGAATCAAAGAGTTAGAACATGCAGTCGAGGAAGTTACTAAGGATTCAGCTCTGACAAAGAGTGCTTTGCAGAAAATGAAGAACATGGAGTCTTCATTAGTAAAAGCAGGCCATGCTTACCCAGACTGCTCGGCAATGTCTTCAAAGCTTCGAGCTATGACAGACAATGCTGAAGAGCAAGTTCGTATGCAAAAGAAACAAGTTACTTATCTTGTAAATCTTGCTGCAAGAACCACCCCTAAAGGCTTTCATTGTCTATCAATGCGACTGACTTCTGAATACTTCGCTTTGCCGCCACCTTCGGAGAGGGAGCTGCTTGAACAGAAAAAGTTGCTTCATGATACTAAGCTCTATCATTATGCTGTCTTCTCCGACAATGTTTTGGCTTGTGCTGTTGTTGTCAACTCCACTGTTTCAAGTGCTAAGGAACCGGAGAGAATTGTCTTCCATTTGGTGACCAATTCATTGAACTTGCCAGCAATGTCCATGTGGTTTTCACTAAATCCTATGGGAAGAGCCACAGTTGAGGTCTTGAGAATGGAGGACTTTGAGTGGCTGTCCAGGGAGTATGATTTAGGATGGAAGGTGCACAATTTTAGTGACCCAAGGTTTACTTCTGAACTCAACTATCTTCGGTTCTATCTGCCAAATATCTTCCCTTCACTGGATAAGGTCGTAGTTCTTGATCATGATGTGGTGGTGCAAAAGGATTTATCTGGTTTATGGCACGTTGATATGAAGGGGAAGGTCAATGGTGCTGTTGAAACTTGTCAAGAAAATGAGGCTTCTTTTCTACGGATGGATATGTTTATCAACTTCTCAGATCCACTGATTGCTGATGAATTCGACAGTAAGGCATGCACATGGGCGTTTGGAATGAACGTATTTGATCTTAGAAGGTGGAGGGAAGAAAATTTAACTGCTCGCTACCATGAATATCTTCGACTGAGTAATGAACGGCCAATCTTGAAGGGTGGAAGCTTGCCTTTGGGGTGGGTTACGTTCTATAACCAGACTACAGCAGTGGAGCGGCGGTGGCACATGCTCGGACTCGGTCATGACTCTACTGTGCCACCAGACGATATCGAGAAGGCAGCTGTTATACACTACAACGGTGCTTGGAAGCCATGGTTAGATATTGGATTTGGCGAGTACAAAGGTTTATGGAGCAAACATATGGACTTCGACAACCCATACTTGCAACAATGCAACATCCACGGCTAA | 2535 | 43.83 | MEEVEDANREAVESVHKVLNLLTVTSPQDQSKITRCLMTETGEAVFKFRKVLCLLDSVGLGHARVRKKKKIMNFHLDSSPSQSMFLESSSPNCRMDLLQGRNLQMGPHPSLELNSNAKNCSIQQIQPQSAAVYHHLLQNRVLLNTQQPEMGYLRSNSGVNLNFDSSSCTQHTMSSTRSFMSSLSIDGSVANLDGSGFHLIGTPRSSDQNSRHKRKCCRRGEDGSVKCGSSGRCHCSKKRKHRVKRSIKVPAISNKLADIPPDDFSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPSMLIVTYEVILICTGIVMKEAGESLKGPRPIVFKDNDFQSREGINSLEFGSNPSKEHKDNRFEDEGEKNNSYKATGQHDRGAVKRDKNARIPQSRSVDYKVKEMTDQLIRARVYLSFAPPGSNSHLTKELRQRIKELEHAVEEVTKDSALTKSALQKMKNMESSLVKAGHAYPDCSAMSSKLRAMTDNAEEQVRMQKKQVTYLVNLAARTTPKGFHCLSMRLTSEYFALPPPSERELLEQKKLLHDTKLYHYAVFSDNVLACAVVVNSTVSSAKEPERIVFHLVTNSLNLPAMSMWFSLNPMGRATVEVLRMEDFEWLSREYDLGWKVHNFSDPRFTSELNYLRFYLPNIFPSLDKVVVLDHDVVVQKDLSGLWHVDMKGKVNGAVETCQENEASFLRMDMFINFSDPLIADEFDSKACTWAFGMNVFDLRRWREENLTARYHEYLRLSNERPILKGGSLPLGWVTFYNQTTAVERRWHMLGLGHDSTVPPDDIEKAAVIHYNGAWKPWLDIGFGEYKGLWSKHMDFDNPYLQQCNIHG | 844 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 9602611 | 9611793 | - | CmoCh17G011970.1 | Cmo17g01197 | 401580 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo17g01197 | 844 | SUPERFAMILY | Nucleotide-diphospho-sugar transferases | 555 | 842 | IPR029044 | - | |
Cmo17g01197 | 844 | SMART | WRKY_cls | 260 | 320 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo17g01197 | 844 | Pfam | Glycosyl transferase family 8 | 522 | 817 | IPR002495 | GO:0016757 | |
Cmo17g01197 | 844 | Gene3D | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 557 | 834 | IPR029044 | - | |
Cmo17g01197 | 844 | Pfam | WRKY DNA -binding domain | 262 | 313 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo17g01197 | 844 | SUPERFAMILY | WRKY DNA-binding domain | 258 | 313 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo17g01197 | 844 | ProSiteProfiles | WRKY domain profile. | 255 | 313 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo17g01197 | 844 | MobiDBLite | consensus disorder prediction | 348 | 399 | - | - | |
Cmo17g01197 | 844 | MobiDBLite | consensus disorder prediction | 357 | 399 | - | - | |
Cmo17g01197 | 844 | Gene3D | WRKY domain | 239 | 313 | IPR036576 | GO:0003700|GO:0006355|GO:0043565 | |
Cmo17g01197 | 844 | Coils | Coil | 432 | 452 | - | - | |
Cmo17g01197 | 844 | Pfam | Plant zinc cluster domain | 213 | 258 | IPR018872 | - | |
Cmo17g01197 | 844 | PANTHER | GALACTURONOSYLTRANSFERASE 6-RELATED | 320 | 843 | - | - | |
Cmo17g01197 | 844 | PANTHER | GALACTURONOSYLTRANSFERASE 4-RELATED | 320 | 843 | IPR029993 | GO:0047262 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo07g00703 | Cmo-Chr7:3171880 | Cmo17g01197 | Cmo-Chr17:9602611 | 4.71E-23 | dispersed | |
Cmo08g00311 | Cmo-Chr8:1911836 | Cmo17g01197 | Cmo-Chr17:9602611 | 1.79E-178 | dispersed | |
Cmo17g01197 | Cmo-Chr17:9602611 | Cmo03g00636 | Cmo-Chr3:5832382 | 1.36E-158 | dispersed | |
Cmo19g00061 | Cmo-Chr19:334750 | Cmo17g01197 | Cmo-Chr17:9602611 | 2.05E-111 | dispersed | |
Cmo17g01197 | Cmo-Chr17:9602611 | Cmo02g01814 | Cmo-Chr2:10274315 | 3.24E-73 | wgd | |
Cmo17g01197 | Cmo-Chr17:9602611 | Cmo08g00309 | Cmo-Chr8:1891000 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11439 | PF01501 | Glyco_transf_8 | 1.30E-69 | CL0110 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo17g01197 | K13648 | - | csv:101206067 | 879.396 |