Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g01215 ATGAAAGAAGTTCATGATCTTGATTTGCATGCAGAAATGGATCAAACACAGATGTGGGTTCATGATCAAAATCAACAAGAACAAGAACAACAACATGAAAATCATCAAATTTTTCTGTCGGATAATGATGATGATGCTTTGATGTTCTACTCTGATTTCCCTCCGTTGCCGGATTTTCCTTGCATGTCGTCTTCTTCGTCGTCTACTCCTGCTCCGGTCAAGCCCACCGTGTCGTTGTCGTCCTCGTCGTCGACTTCCTCCTCCTCCTCTGCCACTTCATGGGCAGTTTTGAAATCTGATGCTGATGAAATTGCTGAAGAAATCAGAATTAATGATGACAATTCCGCCGCCGCCGCCGCCGTGTCGTCCCCTACGGCGGTGAAAACTGAGTTTAACGGCGGAGATTGTACGGATGACATGATGATGGAGACATTTGGATACATGGATTTACTTGAAGATAGCAATGAGTTTTTCGATCCGACGTGTATTTTTCAGAACGAACAACAACAACGAGACCCTATAGAGGATTTGCAATTGGAAAGCTTTGAAGAAGTGGAAATGGAGGATTTGATGATGATGCATGGCGGTGAGAGTAATGATAATGGAGGAAAGCAAAACGTCGCCGCCGTCGCCGCCGCCGCCGCCGCGGCGGCGGAGGAGGAGGATATGGCGAAGGTGTTTTTGGAGTGGCTTAGGAGTAATAGAGAGACGGTTTCTGCTGATGATTTGAGAAATGTTAGGATCAAAAAAGCTACTATTGAAAGCGCTGCCCGCCGCCTCGGCGGCGGCAAGGAGGGAATGAAACAGCTTTTGAAGCTTGTTCTTGAATGGGTTCAAACCAATCATCTTCACAAGAGGAAATTCAAAGAGATCAATGAAAATGAAGCCAATTTGATAGGGTTTCAAAACCCTAATTCCTCCGGCCACCCCTGGATCCAAACACCGCCGCCATTACCGCCTCGGCCGTTGTATTCTCCACCAATTCTTGGGTATGTCCAAGGTGGTGGTGGGGAAGCGTATGGCGGTGGCCGCGGTTATTCCGATCATTACCAATTACTGGACTCCTCATTGTCCTGGAGTAATAGTAACAGGAATAGTAATAGTAATTTGCCGGGACAGTTTGGACTGCCCCCGTCGCATTTCAACTCGTTTGTTGATAATTTTGTGGCTGGGCCGCCTTTGCCACCGCCGCAACCACAAGGTTTCACGGCGGGGTACGGTAGGGGGCAGCAGTACCCTTATATTGGTCAGTATTTTCAAGCGCAGGGCGGGGATAATGGTTTGGTTAGGTTGGATTCATCGGCGACAAAGGAGGCTCGAAAGAAGCGAATGGCAAGGCAGCGGAGATTCTCCGCCCACCACCGCCACAATCACAGTGGACACCACGGCAACCACCACCACCATAGCAACAGCCACCAAAATCAGATGAATCCTAATGCTACAGATCATTGCAACATGGCTACAACTTCTCAGCCAAATGCTGGAAACTGGGTCTACTGGCCATCCTCCACCGATGTGGTTCCAGCCGACTCGCCGGTGCACATAGTCAATCGGTCTAATTCTTCCCTGCAAAACCAGCCGTATCCTCCCCGGATCCAATCGGACCGACGACAGGGATGGAAACCAGAGAAAAATTTAAGGTTTCTTTTACAAAAAGTATTGAAGCAAAGCGATGTGGGAAATCTGGGGAGAATTGTATTGCCAAAGAAAGAAGCAGAAAGCCATCTCCCAGAATTGGAGGCAAGAGATGGGATTTCCCTAGCCATGGAAGACATTGGAACTTCAAGAGTTTGGAATATGCGTTATAGATATTGGCCAAACAACAAAAGCAGAATGTATCTCCTTGAAAATACAGGCGACTTTGTGAGAGCCAATGGACTTCAAGAAGGAGACTTCATTGTCATCTACTCCGACGTCAAGTGCGGGAAATATATGATTCGAGGAGTGAAAGTACGGCAACCGGGGTCGAAACCCGATAGCAAGAGGGGAGGAAAATCGCAAAGAAGCCATTCGACTGCCGGTGTGAACGCCAACGGGTTGTCATCTTCACCGCCGACCCCCGCCACCCCGAGGAGGCTCTGA 2082 48.56 MKEVHDLDLHAEMDQTQMWVHDQNQQEQEQQHENHQIFLSDNDDDALMFYSDFPPLPDFPCMSSSSSSTPAPVKPTVSLSSSSSTSSSSSATSWAVLKSDADEIAEEIRINDDNSAAAAAVSSPTAVKTEFNGGDCTDDMMMETFGYMDLLEDSNEFFDPTCIFQNEQQQRDPIEDLQLESFEEVEMEDLMMMHGGESNDNGGKQNVAAVAAAAAAAAEEEDMAKVFLEWLRSNRETVSADDLRNVRIKKATIESAARRLGGGKEGMKQLLKLVLEWVQTNHLHKRKFKEINENEANLIGFQNPNSSGHPWIQTPPPLPPRPLYSPPILGYVQGGGGEAYGGGRGYSDHYQLLDSSLSWSNSNRNSNSNLPGQFGLPPSHFNSFVDNFVAGPPLPPPQPQGFTAGYGRGQQYPYIGQYFQAQGGDNGLVRLDSSATKEARKKRMARQRRFSAHHRHNHSGHHGNHHHHSNSHQNQMNPNATDHCNMATTSQPNAGNWVYWPSSTDVVPADSPVHIVNRSNSSLQNQPYPPRIQSDRRQGWKPEKNLRFLLQKVLKQSDVGNLGRIVLPKKEAESHLPELEARDGISLAMEDIGTSRVWNMRYRYWPNNKSRMYLLENTGDFVRANGLQEGDFIVIYSDVKCGKYMIRGVKVRQPGSKPDSKRGGKSQRSHSTAGVNANGLSSSPPTPATPRRL 693
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9708753 9712062 + CmoCh17G012150.1 Cmo17g01215 401598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g01215 693 MobiDBLite consensus disorder prediction 652 693 - -
Cmo17g01215 693 MobiDBLite consensus disorder prediction 667 693 - -
Cmo17g01215 693 MobiDBLite consensus disorder prediction 21 40 - -
Cmo17g01215 693 MobiDBLite consensus disorder prediction 470 489 - -
Cmo17g01215 693 MobiDBLite consensus disorder prediction 61 93 - -
Cmo17g01215 693 SMART B3_2 550 652 IPR003340 GO:0003677
Cmo17g01215 693 CDD BfiI_C_EcoRII_N_B3 548 649 - -
Cmo17g01215 693 MobiDBLite consensus disorder prediction 441 469 - -
Cmo17g01215 693 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 13 684 IPR044800 GO:0003700
Cmo17g01215 693 MobiDBLite consensus disorder prediction 435 489 - -
Cmo17g01215 693 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 13 684 - -
Cmo17g01215 693 Pfam B3 DNA binding domain 551 647 IPR003340 GO:0003677
Cmo17g01215 693 ProSiteProfiles B3 DNA-binding domain profile. 550 652 IPR003340 GO:0003677
Cmo17g01215 693 SUPERFAMILY DNA-binding pseudobarrel domain 549 645 IPR015300 -
Cmo17g01215 693 Gene3D - 546 662 IPR015300 -
Cmo17g01215 693 MobiDBLite consensus disorder prediction 26 40 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo08g00060 Cmo17g01215 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02357 Cmo-Chr4:17573407 Cmo17g01215 Cmo-Chr17:9708753 2.70E-36 dispersed
Cmo15g00809 Cmo-Chr15:4009382 Cmo17g01215 Cmo-Chr17:9708753 3.06E-35 dispersed
Cmo17g01215 Cmo-Chr17:9708753 Cmo08g00060 Cmo-Chr8:360890 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11441 PF02362 B3 2.00E-17 CL0405 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g01215 - - cmax:111488128 1150.58