Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g01218 ATGGCGATTCTAAAGCTCTTTTCTCTCTGCATTTGCTTCTTCTTATTGATCAGAGCCCCTGTACGTGGTGATTCCTTACATTTCCCTTCTTCTTCTTCTTCTTCCTCCTCTTCTGTTTCTTCTGATGTTCTACTTCTTTTGGGAAAGATCAGAGCTTCACTTGAAGGTGACACTCAAAACTTACTTTTATCTTCATGGAATTACTCTTTGCCTCTTTGTCAATGGAGGGGACTCAAATGGGTCTTCTCTAGTGGAACTCTTCTGGTCTGCAGTGATTCTTCTTCTCCACAGTGGTCTAATCTCACTCTTTTCAAAGACCCTTCCCTTCATGTTCTCTCTCTGCAACTTCCATCTGCTAATCTTACTGGTTTATTGCCCAAGGAGCTTGGTGAGTTTACAATGCTCCAAAGCCTCTATCTAAGCATAAACTCTTTGACTGGAACCATTCCACTTGAACTTGGTTACAGCTCCTCTCTTTCTGACATTGATTTGAGTAGTAATCTGTTGACCGGAGCTCTTCCACCGTCGATCTGGAATCTGTGTGATAAACTTGTTTCTGTCAGGCTTCATGGAAATTCATTATCTGGGTCTCTGTCGGAGCCGGCTTTACCAAATTCCACCTGCAAGAATTTGAAGGCTTTGGATTTGGGTAACAACCAGATTTCAGGTACTTTCCCAGAATTCATTACTAGGTTTCAGGGTCTGAAAGAGCTTGATCTTGGAAAGAATTTGTTGTCTGGAAAAATCCCACAGAGCTTAGGCCAATTAGAGCTGGAGAAGTTGAACCTTTCAAACAACAATTTCAGTGGAATATTGCCTGTTTTTGGTAACTCAAAGTTTGGCGTTGAGGCTTTTGAAGGGAACAGTCCTGGGCTTTGTGGGGAGCCTTTGAAAACTTGTGCAGGACCTTCCCATTTGAGTTCAGGTGCCATTGCTGGCCTTGTTATCGGCTTGATGACTGGGACAGTGGTTTTAGCGTCGTTGCTTATTGGTTATATGCAAAACAAGAAGAAGAATAGGAGTGAGAGTGAAGATGACATTGAGGAAGGAGAAGATCAAGAGAATGGAAGCAGTGATGGAAAGCTCATTTTGTTTCAGGGTGGAGAGCATTTGACATTGGATGATGTCTTGAATGCTACAGGGCAGGTTATGGAGAAAACAAGCTATGGCACTATATATAAGGCAAAGCTTGCTGATGGAGGTACCATTGCTCTTAGACTGCTGAGGGAAGGTAGTTGCAAAGACAGAAATTCTTGTTTGTCTGTGATCAAACAGCTGGGAAAGATCCGTCATGAGAACTTGATTCCATTGAGAGCTTTCTATCAGGGGAGGAGAGGAGAGAAGCTCCTCATTTATGACTATCTCCCTATCAGAACTTTGCATGATTTTCTACATGAGTCTAGAGCAGGAAAACCAGTGTTGAACTGGGCTAGGAGGCACAAGATTGCATTAGGCATCGCCCGAGGACTAGCTCATCTTCACACAGGTCTTGAAGTGCCCATTACACATGGAAACGTTAGATCAAAAAACGTGCTTGTGGATGACTTCTTTGCAGCGAGACTGATGGAGTTCGGGCTCGACAAGCTAATGATACCATCGGTGGCTGACGAAATCGTGTCGCTTGCAAAATCAGATGGTTACAAGGCACCAGAGCTGCAAAGGATGAAGAAATGCAATTCCAGAACAGATGTGTATGCATTTGGAATCTTGCTATTGGAAATTCTGATTGGGAAGAAGCCAGGAAAAAGTGGAAGAAATGGAGAGTTTGTGGATCTGCCATCAATGGTGAAAGCGGCTGTTTTGGAGGAGACAACAATGGAGGTTTTTGATGTGGAGGTGTTGAAAGGGATCAGAAGTCTCATGGAAGATGGAATCGTTCAGGCATTGAAGCTTGCAATGGGCTGCTGTGCTCCAGTGGCTTCCGTAAGACCCTCCATGGATGAAGTTGTGAAGCAGCTGGAAGAGAACAGACCAAGAAACAGATCTGCTCTGTACAGCCCAACTGAAACAAGAAGTGAAATTGGTACGCCTTTTTGA 2037 43.79 MAILKLFSLCICFFLLIRAPVRGDSLHFPSSSSSSSSSVSSDVLLLLGKIRASLEGDTQNLLLSSWNYSLPLCQWRGLKWVFSSGTLLVCSDSSSPQWSNLTLFKDPSLHVLSLQLPSANLTGLLPKELGEFTMLQSLYLSINSLTGTIPLELGYSSSLSDIDLSSNLLTGALPPSIWNLCDKLVSVRLHGNSLSGSLSEPALPNSTCKNLKALDLGNNQISGTFPEFITRFQGLKELDLGKNLLSGKIPQSLGQLELEKLNLSNNNFSGILPVFGNSKFGVEAFEGNSPGLCGEPLKTCAGPSHLSSGAIAGLVIGLMTGTVVLASLLIGYMQNKKKNRSESEDDIEEGEDQENGSSDGKLILFQGGEHLTLDDVLNATGQVMEKTSYGTIYKAKLADGGTIALRLLREGSCKDRNSCLSVIKQLGKIRHENLIPLRAFYQGRRGEKLLIYDYLPIRTLHDFLHESRAGKPVLNWARRHKIALGIARGLAHLHTGLEVPITHGNVRSKNVLVDDFFAARLMEFGLDKLMIPSVADEIVSLAKSDGYKAPELQRMKKCNSRTDVYAFGILLLEILIGKKPGKSGRNGEFVDLPSMVKAAVLEETTMEVFDVEVLKGIRSLMEDGIVQALKLAMGCCAPVASVRPSMDEVVKQLEENRPRNRSALYSPTETRSEIGTPF 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9719525 9721987 - CmoCh17G012180.1 Cmo17g01218 401601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g01218 678 SUPERFAMILY L domain-like 56 274 - -
Cmo17g01218 678 MobiDBLite consensus disorder prediction 658 678 - -
Cmo17g01218 678 Gene3D Ribonuclease Inhibitor 45 183 IPR032675 -
Cmo17g01218 678 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 30 678 - -
Cmo17g01218 678 Pfam Protein tyrosine and serine/threonine kinase 382 653 IPR001245 GO:0004672|GO:0006468
Cmo17g01218 678 Gene3D Phosphorylase Kinase; domain 1 352 454 - -
Cmo17g01218 678 Coils Coil 333 353 - -
Cmo17g01218 678 MobiDBLite consensus disorder prediction 659 678 - -
Cmo17g01218 678 MobiDBLite consensus disorder prediction 339 359 - -
Cmo17g01218 678 ProSiteProfiles Protein kinase domain profile. 378 678 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo17g01218 678 Pfam Leucine rich repeat 210 268 IPR001611 GO:0005515
Cmo17g01218 678 Gene3D Ribonuclease Inhibitor 184 302 IPR032675 -
Cmo17g01218 678 Gene3D Transferase(Phosphotransferase) domain 1 456 671 - -
Cmo17g01218 678 PANTHER KINASE-LIKE PROTEIN TMKL1-RELATED 30 678 - -
Cmo17g01218 678 SUPERFAMILY Protein kinase-like (PK-like) 383 654 IPR011009 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo08g00064 Cmo17g01218 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00984 Cmo-Chr2:6059094 Cmo17g01218 Cmo-Chr17:9719525 4.83E-49 dispersed
Cmo08g00064 Cmo-Chr8:369338 Cmo17g01218 Cmo-Chr17:9719525 0 dispersed
Cmo16g00232 Cmo-Chr16:1018435 Cmo17g01218 Cmo-Chr17:9719525 9.68E-66 dispersed
Cmo17g01218 Cmo-Chr17:9719525 Cmo04g00119 Cmo-Chr4:620315 2.77E-15 dispersed
Cmo17g01218 Cmo-Chr17:9719525 Cmo04g01155 Cmo-Chr4:5892448 3.36E-13 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75023 PF07714 PK_Tyr_Ser-Thr 4.20E-24 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g01218 - - cmo:103497530 1207.59