Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g01232 ATGAGTTGCTTTCCATGTTTTTGGTATCGTGGGAAAGCAACGAGAAGAACAAAGAGTGATCGAAGGGAACTGTCTGTTTCGTTGCATTCTCGTAGTCTTAAACAACAACATCATCATCATCATGCTCCTCTTCCTCCGCCTCCTCCACGCTCTACGCCTGCAGAAAATCCAAAAGGAAACCAGGTGCAAAAGGAAGCAGAGAAAGATATTGAGATTGGGGAAAAGAATAACATTCAAGCACAAACCTTTACATTTAGAGAGCTCGCCACGGCCACAAAGAATTTCCGTCGAGAATGTCTCATCGGCGAGGGAGGGTTCGGGAGAGTTTACAAAGGCAAACTCGATAAAACTAACCTGGTTATAGCAGTGAAGCAGCTAGATAGAAATGGAATGCAAGGGAACAAAGAGTTTCTTGTGGAGGTTTTGATGCTAAGCCTTTTGCACCATCAAAACCTTGTCAATCTCATTGGCTATTGTGCAGATGGTGATCAAAGACTCTTAGTCTATGAGTACATGCCTTTGGGATCCCTCGAAGATCATCTTCTTGACGTTCCAGCTGATACAAAGGCATTGGATTGGGCAACAAGGTTGAAAGTAGCGTTGGGAGCAGCAAAAGGATTAGAATACTTGCACGACAAAGCCAACCCACCAGTGATATACAGAGATTTGAAGGCATCAAACATTCTATTAGACAATGATTTCAATGCAAAGCTGTCTGATTTTGGTCTCGCAAAGCTCGGGCCTGTCGGGGACAACTCCCATGTTTCCTCCAGAATTATGGGAACCTACGGATATTGTGCTCCCGAGTATCAAAAAACCGGCCAGCTCACGCTCAAATCCGACGTCTACAGCTTTGGCGTCGTCTTGTTGGAGCTCATCACCGGGCAGAGAGTCATTGACAACGCTCGTCCAGTTAAACAGCAAAATTTGGTCGCTTGGGCATACCCAATATTCAAGGAACCAGCGAGATTCAAGGAGCTGGCCGATCCTCTTCTCGGGGGAGATTTCCCAGTGAGGGCTTTGAACCAAGCAGTCGCGGTAGCCGCCATGTGCCTGCACGAGGAGGCAGCGGCACGCCCGTTGATCAGCGACGTCGTGACGGCTCTCAGCTTCTTGGGCGCAGAAGCCACGCAATCATCGCCATCGTCGTATGGCGATGTCCCCTCACCACTTAATGATCACAGTCCAATCAACCCATCCAAACCCAAACCCAAACCCAGAGACTATCTTCACGACGACAACGAAACGGCCGAGGCGCGCCAACGAGCGGTGGCCGAAGCCATCGAATGGGGCTCCTCCTCCAGGCAAAACGCCGCCGCTTCGCGCCCCCAAAGTTGTTCTTCCTTGTGA 1350 49.33 MSCFPCFWYRGKATRRTKSDRRELSVSLHSRSLKQQHHHHHAPLPPPPPRSTPAENPKGNQVQKEAEKDIEIGEKNNIQAQTFTFRELATATKNFRRECLIGEGGFGRVYKGKLDKTNLVIAVKQLDRNGMQGNKEFLVEVLMLSLLHHQNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLLDVPADTKALDWATRLKVALGAAKGLEYLHDKANPPVIYRDLKASNILLDNDFNAKLSDFGLAKLGPVGDNSHVSSRIMGTYGYCAPEYQKTGQLTLKSDVYSFGVVLLELITGQRVIDNARPVKQQNLVAWAYPIFKEPARFKELADPLLGGDFPVRALNQAVAVAAMCLHEEAAARPLISDVVTALSFLGAEATQSSPSSYGDVPSPLNDHSPINPSKPKPKPRDYLHDDNETAEARQRAVAEAIEWGSSSRQNAAASRPQSCSSL 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9771637 9775681 + CmoCh17G012320.1 Cmo17g01232 401615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g01232 449 MobiDBLite consensus disorder prediction 400 422 - -
Cmo17g01232 449 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL26-RELATED 36 439 - -
Cmo17g01232 449 SUPERFAMILY Protein kinase-like (PK-like) 81 393 IPR011009 -
Cmo17g01232 449 MobiDBLite consensus disorder prediction 18 66 - -
Cmo17g01232 449 MobiDBLite consensus disorder prediction 377 394 - -
Cmo17g01232 449 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
Cmo17g01232 449 MobiDBLite consensus disorder prediction 430 449 - -
Cmo17g01232 449 CDD STKc_IRAK 101 369 - -
Cmo17g01232 449 SMART serkin_6 95 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo17g01232 449 PANTHER OS07G0668900 PROTEIN 36 439 - -
Cmo17g01232 449 Pfam Protein tyrosine and serine/threonine kinase 100 365 IPR001245 GO:0004672|GO:0006468
Cmo17g01232 449 MobiDBLite consensus disorder prediction 377 449 - -
Cmo17g01232 449 Gene3D Transferase(Phosphotransferase) domain 1 172 386 - -
Cmo17g01232 449 ProSitePatterns Protein kinases ATP-binding region signature. 101 124 IPR017441 GO:0005524
Cmo17g01232 449 ProSiteProfiles Protein kinase domain profile. 95 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo17g01232 449 Gene3D Phosphorylase Kinase; domain 1 62 171 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo17g01232 Cmo-Chr17:9771637 Cmo08g00010 Cmo-Chr8:55204 1.55E-176 dispersed
Cmo17g01232 Cmo-Chr17:9771637 Cmo08g00072 Cmo-Chr8:389249 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75025 PF07714 PK_Tyr_Ser-Thr 5.10E-46 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g01232 - - csv:101222872 722.235