Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g01263 ATGTCTCGAACTCCGAATTATGAGTTCCAAGAATGGTGGAACAAGCAAAGAGACAGGAACCATGACGAACTCTTGCTGGAAAAGTCCGACAACTTATCGACTTCGCCTGCATTTCTCTCCGTTGAGATCCGGAGTTCTGGGAGCCCTGGAGATCGGATGGCCGATAAGGACCGAGCGAGGACCAGGAGTGCCCGCCAGATTTCGTGGGTTTGGCTGTTGAAATTCCAGCAGATTGCTGGTTCATTGGCTTCAATCACGAATGGTATCGTTTGTCTAGTCCGCACTGCCAATCGTCGGATTTCATCGCCCGATTCACCAGCTGATTCAGCCACGTCTCGGCTCTACAGGATTATCAAAGTGTTCTTGATTGTAGTGCTTCTATTGCTCGTTTTTGAGCTTGTGGCGTACTTCAATGGCTGGCATTTCAGCCCCCCTTCTGTGAGTTCTGCTTCTGCGGAGGTGCTTGGATTCATAGGGTTTCTCTATGCTAATTGGCTTCAGATTCGGGGAAATTACCTGTCTCCATCGCTGCAATGCTTGATCAATCTCTGCATTGTATTGTTCCTGATCCAGTCAGTGGATCGTTTGCTTCTAATGCTGGGGTGTTTTTGGATCAAGTTCAGGCGATTGAAGCCCGTTGCGGCGTTCGAGTACTCTTCCACGGGCGAAAACGCTGCTAGTCCTGAGGATTATCCAATGGTATTGGTGCAGATTCCCATGTGCAACGAGAGGGAGGTTTATCAACAATCTATTGCAGCTGTTTGTATTCAGGACTGGCCAAAGGATAAAATGCTCATACAGGTTTTAGATGATTCTGATGAGCTAGATGTTCAACAGCTTATCAAGGCTGAAGGGAATGATGAACTTGCATTGGTCCAAACAAGGTGGTCGTTCGTGAACAAGGACGAAAACTTGCTCACGAGATTGCAGAACATAAATCTATCCTTCCATTTCGAGGTCGAGCAGCAAGTTAATGGCATGTTCATCAATTTTTTTGGTTTCAATGGAACTGCTGGAGTCTGGAGAATTAAAGCTCTGGAAGAATGCGGGGGCTGGTTAGAAAGAACAACGGTCGAGGACATGGATATTGCAGTCCGTGCTCATCTTTGTGGCTGGAAATTCATATATCTAAATGATGTGAAGTGCCTTTGTGAACTTCCAGAATCATACGAAGCGTACAAGAAACAACAGCACCGGTGGCATTCGGGCCCGATGCAGCTATTTCGTTTGTGCTTCTTTGATGTACTCAAATCAAAGGTGAGTTGGAAGAAGAAAGCTAATTTGATCTTTCTGTTCTTCCTCTTGCGAAAGCTCATCCTTCCCTTCTATTCCTTTACCTTATTCTGCATAATTCTCCCCCTCTCCATGTTCCTTCCAGAAGCTCATCTTCCAGCTTGGGTTGTTTGCTATGTGCCCGGAATCATGTCCATCTTAAATATTCTTCCTGCACCGCGTTCGTTTCCGTTCTTAGTCCCCTATCTTCTATTCGAAAACACTATGTCCGTTACCAAATTCAATGCCATGATATCGGGGTTGTTCCGCTTTGGAAGTTCGTACGAATGGATAGTAACAAAGAAACTAGGAAGATCATCTGAAAACAATCTTGTTGCTTTGGAAAAGGAACTAGAACCTCTAGTTGAGGGTACGAGTCTTCATCGATCTTCCTCGGAATCAGGTCTGCAGGAATTGACCAAGCTCGAGATATCGAAAAAAGTAGGGAAAAACAAACGAAATCGTCTGTACAGGAAGGAATTGGCTCTTGCAGTCATTTTGTTGACTGCCTCAGTGAGAAGTCTGTTGTCTGCTCAAGGAATTCACTTCTACTTCCTATTGTTTCAGGGTATCTCTTTTCTAGTAGTGGGTCTTGATTTAATTGGAGAGCAGGTCAGTTAA 1893 45.11 MSRTPNYEFQEWWNKQRDRNHDELLLEKSDNLSTSPAFLSVEIRSSGSPGDRMADKDRARTRSARQISWVWLLKFQQIAGSLASITNGIVCLVRTANRRISSPDSPADSATSRLYRIIKVFLIVVLLLLVFELVAYFNGWHFSPPSVSSASAEVLGFIGFLYANWLQIRGNYLSPSLQCLINLCIVLFLIQSVDRLLLMLGCFWIKFRRLKPVAAFEYSSTGENAASPEDYPMVLVQIPMCNEREVYQQSIAAVCIQDWPKDKMLIQVLDDSDELDVQQLIKAEGNDELALVQTRWSFVNKDENLLTRLQNINLSFHFEVEQQVNGMFINFFGFNGTAGVWRIKALEECGGWLERTTVEDMDIAVRAHLCGWKFIYLNDVKCLCELPESYEAYKKQQHRWHSGPMQLFRLCFFDVLKSKVSWKKKANLIFLFFLLRKLILPFYSFTLFCIILPLSMFLPEAHLPAWVVCYVPGIMSILNILPAPRSFPFLVPYLLFENTMSVTKFNAMISGLFRFGSSYEWIVTKKLGRSSENNLVALEKELEPLVEGTSLHRSSSESGLQELTKLEISKKVGKNKRNRLYRKELALAVILLTASVRSLLSAQGIHFYFLLFQGISFLVVGLDLIGEQVS 630
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9943064 9946990 + CmoCh17G012630.1 Cmo17g01263 401646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g01263 630 PANTHER - 285 629 - -
Cmo17g01263 630 PANTHER - 25 284 - -
Cmo17g01263 630 Pfam Glycosyl transferase family group 2 287 468 IPR001173 -
Cmo17g01263 630 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 282 384 IPR029044 -
Cmo17g01263 630 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 223 281 IPR029044 -
Cmo17g01263 630 PANTHER XYLOGLUCAN GLYCOSYLTRANSFERASE 6-RELATED 285 629 - -
Cmo17g01263 630 PANTHER XYLOGLUCAN GLYCOSYLTRANSFERASE 6-RELATED 25 284 - -
Cmo17g01263 630 SUPERFAMILY Nucleotide-diphospho-sugar transferases 227 440 IPR029044 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g00330 Cmo-Chr15:1534075 Cmo17g01263 Cmo-Chr17:9943064 0 dispersed
Cmo17g01263 Cmo-Chr17:9943064 Cmo07g00905 Cmo-Chr7:4323780 5.24E-18 dispersed
Cmo17g01263 Cmo-Chr17:9943064 Cmo08g00242 Cmo-Chr8:1469915 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g01263 - - csv:101216681 1018.84