Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g01264 ATGGATGAGGATTTTGATATCCCTGCTGCGCCTGACATGAACGACGACTTCGATCTTCCTGATGAACCCGCTGCGCTTAAGGTTGGGGAGGAGAAGGAAATTGGAAATCAAGGGTTGAAGAAGAAGCTTTTGAAGGAAGGTGAAGGATGGGTCACTCCTGAAAATGGCGACGAGGTTGAAGTTCACTATACTGGGACTTTGCTGGATGGGACTCAGTTTGATTCGAGCCGCGATCGTGGCACCCCGTTCAAGTTCACTCTTGGTCAAGGACAAGTGATCAAAGGATGGGATCTGGGTATTAAAACAATGAAGAAAAGTGAAAAAGCTCTTTTCACCATTCCTCCTGAACTGGCATATGGTGAATCTGGCTCCCCACCTACCATCCCTCCTAGTGCGACATTGCAGTTCGACGTCGAGTTACTATCTTGGACAAGCGTTAAGGACATATGCAAGGACGGAGGAATATTCAAGAAGATCCTAACTGAAGGGAACAAATGGGATAATCCGAAGGACCTTGATGAAGTGCTAGTTAATTTTGAAGCTAAGCTAGAAGATGGAACTCTTGTTGCCAAAGCTGATGGAGTGGAATTTACCGTTGGGGATGGTTACTTTTGTCCTGCCGTTGCGAGGGCTGTAAAAACCCTGAAGATAGGCGAAAAGGCGCTCCTCACGGTGAAGCCACAATATGGGTTTGGGGAGAAAGGTAAACCAGCCTTGAGTAACGAACGTGCAGTTCCACCGAATGCATCGCTCGATATTACTTTAGAGTTGGTATCTTGGAAGACTGTTTCAGAAGTTACCCCTGACAAAAAGGTTATCAAGAAAATTCTAAAAGAAGGAGAAGGGTATGAGAAGCCAAATGATGGAGCCATTGTGAAAGTAAAATTGACTGGGAAGTTGGGAGATGGCAAGGTATTTTTGAGGAAGGGATATGATGATGGTGAAGAGCCATTCGAGTTTAAAACAGACGAGGAACAAGTGATCGATGGCCTCGACAAAGCCGTGGCGACAATGAAGAAAGGAGAGATAGCCCTGGTGACAATAGCACAAGAGTATGCTTTTGGATCGTCCGAGTCACTACAGGAACTAGCTGTAGTTCCTCCAAACTCAACTGTGTATTATGAGGTCGAGCTGGTGGCTTTTGACAAGGAGAAGGAATCATGGGATATGAATAACCAGGAAAAGGTTGAAGCTGCTGGTAAAAAGAAGGAAGAAGGAAATGTGTTGTTCAAGTCAGGAAAATTTGCTAGAGCTTCAAAGAGATATGAGAAGGCGGTGAAGTTCATCGAATACGATTCTTCGTTTAGCGAAGACGAGAAAAAGCAGGCGAAGGCGTTGAAAGTTGCATGCAATTTGAACAATGCAGCTTGTAAATTGAAGCTAAAGCAATACAACGAGGCAGAGAAATTGTGTACCAAGGTGCTGGAACTTGAGAGTTCAAATGTTAAGGCTCTCTATAGAAGGGCTCAAGCGTATATCGAACTAGCGGATTTCGATTTGGCTGAATTTGACATCAAGAAGGCTCTCGATATCGATCCGAATAACAGGGATGTGAAATTGGAGTACAAAACACTGAAGGAGAAGGTGAAGGAATACAACAAAAAGGATGCCAAGTTCTACGGCAACATGTTTGCCAAAATGAAGAATTAG 1650 44.3 MDEDFDIPAAPDMNDDFDLPDEPAALKVGEEKEIGNQGLKKKLLKEGEGWVTPENGDEVEVHYTGTLLDGTQFDSSRDRGTPFKFTLGQGQVIKGWDLGIKTMKKSEKALFTIPPELAYGESGSPPTIPPSATLQFDVELLSWTSVKDICKDGGIFKKILTEGNKWDNPKDLDEVLVNFEAKLEDGTLVAKADGVEFTVGDGYFCPAVARAVKTLKIGEKALLTVKPQYGFGEKGKPALSNERAVPPNASLDITLELVSWKTVSEVTPDKKVIKKILKEGEGYEKPNDGAIVKVKLTGKLGDGKVFLRKGYDDGEEPFEFKTDEEQVIDGLDKAVATMKKGEIALVTIAQEYAFGSSESLQELAVVPPNSTVYYEVELVAFDKEKESWDMNNQEKVEAAGKKKEEGNVLFKSGKFARASKRYEKAVKFIEYDSSFSEDEKKQAKALKVACNLNNAACKLKLKQYNEAEKLCTKVLELESSNVKALYRRAQAYIELADFDLAEFDIKKALDIDPNNRDVKLEYKTLKEKVKEYNKKDAKFYGNMFAKMKN 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 9947989 9951345 - CmoCh17G012640.1 Cmo17g01264 401647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g01264 549 Gene3D Tetratricopeptide repeat domain 385 542 IPR011990 GO:0005515
Cmo17g01264 549 SUPERFAMILY FKBP-like 148 264 - -
Cmo17g01264 549 MobiDBLite consensus disorder prediction 1 20 - -
Cmo17g01264 549 ProSiteProfiles TPR repeat profile. 482 515 IPR019734 GO:0005515
Cmo17g01264 549 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 172 261 IPR001179 GO:0003755
Cmo17g01264 549 Gene3D - 31 147 IPR046357 GO:0003755
Cmo17g01264 549 SUPERFAMILY FKBP-like 33 149 - -
Cmo17g01264 549 SUPERFAMILY FKBP-like 264 399 - -
Cmo17g01264 549 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 56 144 IPR001179 GO:0003755
Cmo17g01264 549 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 381 548 - -
Cmo17g01264 549 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 271 380 - -
Cmo17g01264 549 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 268 - -
Cmo17g01264 549 PANTHER PEPTIDYLPROLYL ISOMERASE 381 548 - -
Cmo17g01264 549 PANTHER PEPTIDYLPROLYL ISOMERASE 271 380 - -
Cmo17g01264 549 PANTHER PEPTIDYLPROLYL ISOMERASE 1 268 - -
Cmo17g01264 549 MobiDBLite consensus disorder prediction 1 19 - -
Cmo17g01264 549 Gene3D - 262 383 IPR046357 GO:0003755
Cmo17g01264 549 Gene3D - 148 261 IPR046357 GO:0003755
Cmo17g01264 549 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 283 379 IPR001179 GO:0003755
Cmo17g01264 549 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 169 257 IPR001179 GO:0003755
Cmo17g01264 549 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 51 141 IPR001179 GO:0003755
Cmo17g01264 549 SMART tpr_5 482 515 IPR019734 GO:0005515
Cmo17g01264 549 SMART tpr_5 448 481 IPR019734 GO:0005515
Cmo17g01264 549 SMART tpr_5 399 432 IPR019734 GO:0005515
Cmo17g01264 549 Coils Coil 515 535 - -
Cmo17g01264 549 Pfam Tetratricopeptide repeat 482 515 IPR001440 GO:0005515
Cmo17g01264 549 SUPERFAMILY TPR-like 387 547 IPR011990 GO:0005515
Cmo17g01264 549 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 289 382 IPR001179 GO:0003755
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00242 Cmo-Chr1:1090168 Cmo17g01264 Cmo-Chr17:9947989 1.06E-09 dispersed
Cmo08g00244 Cmo-Chr8:1483536 Cmo17g01264 Cmo-Chr17:9947989 4.08E-11 dispersed
Cmo14g01561 Cmo-Chr14:12466506 Cmo17g01264 Cmo-Chr17:9947989 0 dispersed
Cmo16g00185 Cmo-Chr16:830245 Cmo17g01264 Cmo-Chr17:9947989 1.60E-18 dispersed
Cmo17g01264 Cmo-Chr17:9947989 Cmo18g01214 Cmo-Chr18:12066475 2.02E-06 dispersed
Cmo20g00298 Cmo-Chr20:1454634 Cmo17g01264 Cmo-Chr17:9947989 1.36E-10 dispersed
Cmo07g01070 Cmo-Chr7:5508104 Cmo17g01264 Cmo-Chr17:9947989 9.74E-19 transposed
Cmo15g00106 Cmo-Chr15:517622 Cmo17g01264 Cmo-Chr17:9947989 7.22E-10 transposed
Cmo17g01264 Cmo-Chr17:9947989 Cmo08g00243 Cmo-Chr8:1477784 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g01264 K09571 - csv:101214513 1012.29