Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo17g01264 | ATGGATGAGGATTTTGATATCCCTGCTGCGCCTGACATGAACGACGACTTCGATCTTCCTGATGAACCCGCTGCGCTTAAGGTTGGGGAGGAGAAGGAAATTGGAAATCAAGGGTTGAAGAAGAAGCTTTTGAAGGAAGGTGAAGGATGGGTCACTCCTGAAAATGGCGACGAGGTTGAAGTTCACTATACTGGGACTTTGCTGGATGGGACTCAGTTTGATTCGAGCCGCGATCGTGGCACCCCGTTCAAGTTCACTCTTGGTCAAGGACAAGTGATCAAAGGATGGGATCTGGGTATTAAAACAATGAAGAAAAGTGAAAAAGCTCTTTTCACCATTCCTCCTGAACTGGCATATGGTGAATCTGGCTCCCCACCTACCATCCCTCCTAGTGCGACATTGCAGTTCGACGTCGAGTTACTATCTTGGACAAGCGTTAAGGACATATGCAAGGACGGAGGAATATTCAAGAAGATCCTAACTGAAGGGAACAAATGGGATAATCCGAAGGACCTTGATGAAGTGCTAGTTAATTTTGAAGCTAAGCTAGAAGATGGAACTCTTGTTGCCAAAGCTGATGGAGTGGAATTTACCGTTGGGGATGGTTACTTTTGTCCTGCCGTTGCGAGGGCTGTAAAAACCCTGAAGATAGGCGAAAAGGCGCTCCTCACGGTGAAGCCACAATATGGGTTTGGGGAGAAAGGTAAACCAGCCTTGAGTAACGAACGTGCAGTTCCACCGAATGCATCGCTCGATATTACTTTAGAGTTGGTATCTTGGAAGACTGTTTCAGAAGTTACCCCTGACAAAAAGGTTATCAAGAAAATTCTAAAAGAAGGAGAAGGGTATGAGAAGCCAAATGATGGAGCCATTGTGAAAGTAAAATTGACTGGGAAGTTGGGAGATGGCAAGGTATTTTTGAGGAAGGGATATGATGATGGTGAAGAGCCATTCGAGTTTAAAACAGACGAGGAACAAGTGATCGATGGCCTCGACAAAGCCGTGGCGACAATGAAGAAAGGAGAGATAGCCCTGGTGACAATAGCACAAGAGTATGCTTTTGGATCGTCCGAGTCACTACAGGAACTAGCTGTAGTTCCTCCAAACTCAACTGTGTATTATGAGGTCGAGCTGGTGGCTTTTGACAAGGAGAAGGAATCATGGGATATGAATAACCAGGAAAAGGTTGAAGCTGCTGGTAAAAAGAAGGAAGAAGGAAATGTGTTGTTCAAGTCAGGAAAATTTGCTAGAGCTTCAAAGAGATATGAGAAGGCGGTGAAGTTCATCGAATACGATTCTTCGTTTAGCGAAGACGAGAAAAAGCAGGCGAAGGCGTTGAAAGTTGCATGCAATTTGAACAATGCAGCTTGTAAATTGAAGCTAAAGCAATACAACGAGGCAGAGAAATTGTGTACCAAGGTGCTGGAACTTGAGAGTTCAAATGTTAAGGCTCTCTATAGAAGGGCTCAAGCGTATATCGAACTAGCGGATTTCGATTTGGCTGAATTTGACATCAAGAAGGCTCTCGATATCGATCCGAATAACAGGGATGTGAAATTGGAGTACAAAACACTGAAGGAGAAGGTGAAGGAATACAACAAAAAGGATGCCAAGTTCTACGGCAACATGTTTGCCAAAATGAAGAATTAG | 1650 | 44.3 | MDEDFDIPAAPDMNDDFDLPDEPAALKVGEEKEIGNQGLKKKLLKEGEGWVTPENGDEVEVHYTGTLLDGTQFDSSRDRGTPFKFTLGQGQVIKGWDLGIKTMKKSEKALFTIPPELAYGESGSPPTIPPSATLQFDVELLSWTSVKDICKDGGIFKKILTEGNKWDNPKDLDEVLVNFEAKLEDGTLVAKADGVEFTVGDGYFCPAVARAVKTLKIGEKALLTVKPQYGFGEKGKPALSNERAVPPNASLDITLELVSWKTVSEVTPDKKVIKKILKEGEGYEKPNDGAIVKVKLTGKLGDGKVFLRKGYDDGEEPFEFKTDEEQVIDGLDKAVATMKKGEIALVTIAQEYAFGSSESLQELAVVPPNSTVYYEVELVAFDKEKESWDMNNQEKVEAAGKKKEEGNVLFKSGKFARASKRYEKAVKFIEYDSSFSEDEKKQAKALKVACNLNNAACKLKLKQYNEAEKLCTKVLELESSNVKALYRRAQAYIELADFDLAEFDIKKALDIDPNNRDVKLEYKTLKEKVKEYNKKDAKFYGNMFAKMKN | 549 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 9947989 | 9951345 | - | CmoCh17G012640.1 | Cmo17g01264 | 401647 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo17g01264 | 549 | Gene3D | Tetratricopeptide repeat domain | 385 | 542 | IPR011990 | GO:0005515 | |
Cmo17g01264 | 549 | SUPERFAMILY | FKBP-like | 148 | 264 | - | - | |
Cmo17g01264 | 549 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Cmo17g01264 | 549 | ProSiteProfiles | TPR repeat profile. | 482 | 515 | IPR019734 | GO:0005515 | |
Cmo17g01264 | 549 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 172 | 261 | IPR001179 | GO:0003755 | |
Cmo17g01264 | 549 | Gene3D | - | 31 | 147 | IPR046357 | GO:0003755 | |
Cmo17g01264 | 549 | SUPERFAMILY | FKBP-like | 33 | 149 | - | - | |
Cmo17g01264 | 549 | SUPERFAMILY | FKBP-like | 264 | 399 | - | - | |
Cmo17g01264 | 549 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 56 | 144 | IPR001179 | GO:0003755 | |
Cmo17g01264 | 549 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | 381 | 548 | - | - | |
Cmo17g01264 | 549 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | 271 | 380 | - | - | |
Cmo17g01264 | 549 | PANTHER | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE | 1 | 268 | - | - | |
Cmo17g01264 | 549 | PANTHER | PEPTIDYLPROLYL ISOMERASE | 381 | 548 | - | - | |
Cmo17g01264 | 549 | PANTHER | PEPTIDYLPROLYL ISOMERASE | 271 | 380 | - | - | |
Cmo17g01264 | 549 | PANTHER | PEPTIDYLPROLYL ISOMERASE | 1 | 268 | - | - | |
Cmo17g01264 | 549 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
Cmo17g01264 | 549 | Gene3D | - | 262 | 383 | IPR046357 | GO:0003755 | |
Cmo17g01264 | 549 | Gene3D | - | 148 | 261 | IPR046357 | GO:0003755 | |
Cmo17g01264 | 549 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 283 | 379 | IPR001179 | GO:0003755 | |
Cmo17g01264 | 549 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 169 | 257 | IPR001179 | GO:0003755 | |
Cmo17g01264 | 549 | Pfam | FKBP-type peptidyl-prolyl cis-trans isomerase | 51 | 141 | IPR001179 | GO:0003755 | |
Cmo17g01264 | 549 | SMART | tpr_5 | 482 | 515 | IPR019734 | GO:0005515 | |
Cmo17g01264 | 549 | SMART | tpr_5 | 448 | 481 | IPR019734 | GO:0005515 | |
Cmo17g01264 | 549 | SMART | tpr_5 | 399 | 432 | IPR019734 | GO:0005515 | |
Cmo17g01264 | 549 | Coils | Coil | 515 | 535 | - | - | |
Cmo17g01264 | 549 | Pfam | Tetratricopeptide repeat | 482 | 515 | IPR001440 | GO:0005515 | |
Cmo17g01264 | 549 | SUPERFAMILY | TPR-like | 387 | 547 | IPR011990 | GO:0005515 | |
Cmo17g01264 | 549 | ProSiteProfiles | FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. | 289 | 382 | IPR001179 | GO:0003755 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo01g00242 | Cmo-Chr1:1090168 | Cmo17g01264 | Cmo-Chr17:9947989 | 1.06E-09 | dispersed | |
Cmo08g00244 | Cmo-Chr8:1483536 | Cmo17g01264 | Cmo-Chr17:9947989 | 4.08E-11 | dispersed | |
Cmo14g01561 | Cmo-Chr14:12466506 | Cmo17g01264 | Cmo-Chr17:9947989 | 0 | dispersed | |
Cmo16g00185 | Cmo-Chr16:830245 | Cmo17g01264 | Cmo-Chr17:9947989 | 1.60E-18 | dispersed | |
Cmo17g01264 | Cmo-Chr17:9947989 | Cmo18g01214 | Cmo-Chr18:12066475 | 2.02E-06 | dispersed | |
Cmo20g00298 | Cmo-Chr20:1454634 | Cmo17g01264 | Cmo-Chr17:9947989 | 1.36E-10 | dispersed | |
Cmo07g01070 | Cmo-Chr7:5508104 | Cmo17g01264 | Cmo-Chr17:9947989 | 9.74E-19 | transposed | |
Cmo15g00106 | Cmo-Chr15:517622 | Cmo17g01264 | Cmo-Chr17:9947989 | 7.22E-10 | transposed | |
Cmo17g01264 | Cmo-Chr17:9947989 | Cmo08g00243 | Cmo-Chr8:1477784 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo17g01264 | K09571 | - | csv:101214513 | 1012.29 |