Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g01290 ATGGATTCGGCGAGGAGTTGGTTCAATAAGCTTCAGCCGAGAGATAGGCCGAGAGGTTCTTTGAAGAAGAAGGACGATAGTATGGAAGGGAGCGAGGATTGTGCTGATAAAATGGACGAAGAAACGCATTCGAACAGCACTAAGCAGAAGGCTGCTGCGGCAAAGCAGTACATCGAGAATCATTACAAGGAGCAAATGAAGAATCTGCAGGAAAGGAAGGAAAGACGAAATATATTGGAAAAGAAGTTGGCTGATGCTGATGTTTCTGAAGAAGATCAAAACAATTTACTCAAGTATTTAGAGAAGAAGGAAACTGAATATATGCGCCTCAAAAGGCACAAAATGGGTGTCAGTGATTTTGATTTACTAACAATTATCGGCAAAGGTGCTTTTGGGGAGGTTCGTGTATGTAGAGAGAAGACTTCAGGTCAGGTATATGCTATGAAAAAGCTTAAAAAATCAGAGATGCTTCGAAGGGGCCAGGTGGAGCATGTGAGAGCTGAAAGAAATCTGCTTGCTGAAGTAGACAGCAATTGTATCGTGAAACTCTATTGTTCTTTTCAAGATGACGAGTTTCTTTATCTCATCATGGAGTACCTACCTGGTGGAGATATGATGACTTTATTGATGAGAAAGGATACTTTGACTGATGATGAAGCAAGAGATATTAAGCCTGACAACTTGCTGCTTGATAAATTTGGGCACTTGAGACTCTCGGACTTTGGACTGTGCAAACCATTAGATTGCAGTAAACTCAAAGAACAAGATCTTGATATAGGGAGTGTCCGTAATGAAGCTGGACAAAGTGATGAGCGTAATGCAGCTCCCCGTACTCAACAAGAGCAACTCCAACATTGGCAGAAGAATCGAAGAATGCTTGCTTATTCAACAGTTGGAACACCAGATTATATTGCTCCGGAGGGTGAATATAATAGATCTTATGATAATGACCTTTCAATATCTCAACTGCTAAAGAGATGGAGGTTATTTGGAGTGGCATCAATTTGTTTGCAATTTGATTTGCAACATTGTACTGGCACGACGCCTTTTGCAACTACCATAGCAACATTTTGGAGCAAATTTTGTAGGTGGTCACTTGGAGCTATTATGTATGAAATGCTTGTTGGCTACCCACCTTTTTACTCTGATGATCCAATGTCGACATGTCGGAAGATAGTGAACTGGAGAACTCATTTGGTGTTCCCTGATGAAGCAAAGCTATCTCCCTTGGCAAAAGATCTTATCAGCAAACTACTATGCAATGTTGACGAGAGGCTAGGTACAAATGGCGCGGATGACATTAAGGTTCATCCGTGGTTTGAAGGTATTGAATGGGATAGGCTATATGAAATGGAAGCTGCATTTGTTCCCGAGGTTAAAGATGAGCTAGACACTCAAAATTTTGAAAAGTTTGAAGAGTGTGACCTGCAAAGCAGTTCTTCATCTAAATCTGGTCCATGGAGAAAGATGCTCTCATCTAAGGACATCAACTTTGTTGGATACACTTACAAGAACTTCGAAATTGTCAATGATTATCAATTGCCTGGGATGGAAAGTGATGCAGAAGAAAGTAATAATAATAAGATAGGCACGAAGAGGTGTTGGCTTCTAAATAAAAACTATATATATATGCTCTCATCTAAGGACATCAACTTTGTTGGATACACTTACAAGAACTTCGAAATTGTCAATGATTATCAATTGCCTGGGATGGATGGCGAAGAGGCAACAGATGCATCTGATACATCTAATTATGGTCAGTCCAGAGAAGGTAGCTTTTCAAACTCAATGACATCTCAACAGGATGAAGTTGAAGCAAGGAAAGAGTCGATAAAATTAAACTCGAGCAAGATGGAGTTGGATTTTTGGTCTTTAACAATCGAGCTTGGAGACGAGCCTTTGACTGTTGTAGCATTGTTCACAGGCAGGGGAATAACATATCTGATAAAGAACATGCGTCTTAAACCACTGAAAAATTCCCGTGCCAAGTTGCATCCTTTCTTCAAATCTTGA 2013 40.24 MDSARSWFNKLQPRDRPRGSLKKKDDSMEGSEDCADKMDEETHSNSTKQKAAAAKQYIENHYKEQMKNLQERKERRNILEKKLADADVSEEDQNNLLKYLEKKETEYMRLKRHKMGVSDFDLLTIIGKGAFGEVRVCREKTSGQVYAMKKLKKSEMLRRGQVEHVRAERNLLAEVDSNCIVKLYCSFQDDEFLYLIMEYLPGGDMMTLLMRKDTLTDDEARDIKPDNLLLDKFGHLRLSDFGLCKPLDCSKLKEQDLDIGSVRNEAGQSDERNAAPRTQQEQLQHWQKNRRMLAYSTVGTPDYIAPEGEYNRSYDNDLSISQLLKRWRLFGVASICLQFDLQHCTGTTPFATTIATFWSKFCRWSLGAIMYEMLVGYPPFYSDDPMSTCRKIVNWRTHLVFPDEAKLSPLAKDLISKLLCNVDERLGTNGADDIKVHPWFEGIEWDRLYEMEAAFVPEVKDELDTQNFEKFEECDLQSSSSSKSGPWRKMLSSKDINFVGYTYKNFEIVNDYQLPGMESDAEESNNNKIGTKRCWLLNKNYIYMLSSKDINFVGYTYKNFEIVNDYQLPGMDGEEATDASDTSNYGQSREGSFSNSMTSQQDEVEARKESIKLNSSKMELDFWSLTIELGDEPLTVVALFTGRGITYLIKNMRLKPLKNSRAKLHPFFKS 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 10140158 10150423 - CmoCh17G012900.1 Cmo17g01290 401673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g01290 670 ProSiteProfiles Protein kinase domain profile. 120 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo17g01290 670 MobiDBLite consensus disorder prediction 577 601 - -
Cmo17g01290 670 MobiDBLite consensus disorder prediction 9 46 - -
Cmo17g01290 670 Gene3D Phosphorylase Kinase; domain 1 22 223 - -
Cmo17g01290 670 Gene3D Transferase(Phosphotransferase) domain 1 364 460 - -
Cmo17g01290 670 SMART pkinase_C_6 441 505 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cmo17g01290 670 Coils Coil 62 82 - -
Cmo17g01290 670 Pfam Protein kinase C terminal domain 459 503 IPR017892 GO:0004674|GO:0005524|GO:0006468
Cmo17g01290 670 SUPERFAMILY Protein kinase-like (PK-like) 93 493 IPR011009 -
Cmo17g01290 670 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 364 517 - -
Cmo17g01290 670 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 39 307 - -
Cmo17g01290 670 Gene3D Transferase(Phosphotransferase) domain 1 224 315 - -
Cmo17g01290 670 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 544 571 - -
Cmo17g01290 670 Pfam Protein kinase domain 122 221 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo17g01290 670 ProSiteProfiles AGC-kinase C-terminal domain profile. 441 513 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cmo17g01290 670 PANTHER SERINE/THREONINE-PROTEIN KINASE 39 307 - -
Cmo17g01290 670 ProSitePatterns Protein kinases ATP-binding region signature. 126 149 IPR017441 GO:0005524
Cmo17g01290 670 SMART serkin_6 120 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo17g01290 670 MobiDBLite consensus disorder prediction 572 608 - -
Cmo17g01290 670 PANTHER SERINE/THREONINE-PROTEIN KINASE 364 517 - -
Cmo17g01290 670 PANTHER SERINE/THREONINE-PROTEIN KINASE 544 571 - -
Cmo17g01290 670 MobiDBLite consensus disorder prediction 1 54 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g01054 Cmo-Chr8:6806948 Cmo17g01290 Cmo-Chr17:10140158 0 dispersed
Cmo17g00156 Cmo-Chr17:904544 Cmo17g01290 Cmo-Chr17:10140158 0 dispersed
Cmo17g01290 Cmo-Chr17:10140158 Cmo08g00273 Cmo-Chr8:1709636 1.68E-61 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75026 PF00069 Pkinase 2.20E-19 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g01290 K08790 - csv:101221720 822.772