Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g01320 ATGGCTTCTACTACCGGTCTTGTTGGAGTTGGATCACTTGTTTGGTTGGAGGATTCTGAAGAAGCTTGGATAGAGGGTGAAGTGTTAGAAGTTCGTGGCGAAGAAATTAAGGTCCTATGCACCTCAGGGAAAACGGTTGCAGTTAAAGCAGCTAATGTCTACCCGAAAGATTCCGAAGTGCCACCTTGTGGTGTGGATGACATGACCAAGTTGGCTTACTTGCACGAACCCGGGGTGCTACACAATTTAAAATTGAGATATGATATTAATGAAATATATACTTATACAGGGAACATATTGATTGCTGTAAACCCTTTTACGAGGTTACCCCATCTGTATGATAGCTATATGATGGCACAATATAAAGGGGCCGCACTCGGTGAGCTGAGTCCACATCCGTTTGCAATTGCAGATGCTGCCTACAGACTTATGGTCAATGAGAAAAAAAGTCAATCCATATTGGTCAGTGGTGAAAGTGGGGCTGGAAAGACGGAAAGTACAAAGTTGCTTATGCGTTATCTTGCGTATATGGGAGGGAGAGCTGCTGCCGAGGGGAGGTCAGTTGAGCAGCAAGTTCTCGAGTCAAATCCTGTTTTAGAAGCATTTGGGAATGCGAAAACTGTTCGGAACAACAACTCAAGTCGTTTCGGTAAGTTTGTGGAGATCCAATTTGACCAAGGGGGAAGAATATCAGGAGCTGCTATCAGAACTTACTTGCTCGAAAGATCTCGTGTTTGTCAGGTGTCCGATCCAGAGAGAAACTATCATTGCTTCTACATGCTTTGTGCTGGACCGCCTGAGGATGTCAAGAAGTATAAATTGGAAAACCCAAGAAGTTTCCATTATCTAAATCAATCAAACTGCTATGAGTTGGATGAAATTGATGATGCCAAAGAATATATTGCAACAAGAAAAGCAATGGAAGTCGTTGGGATAAGTTCGGACGAGCAGGATGGAATATTTCGTGTTGTAGCTGCGATTCTTCATCTAGGAAACATTGAATTCGCAAAAGGGAAGGAGGCCGATTCTTCCGTTCCGAAAGATGAAAAATCTTGGTTCCATCTTAAAACCGCTGCGGAGCTTTTCATGTGTGATGAAAAGGCCTTGGAAGACTCTCTCTGCAAACGTGTAATCGTCACTCGTGATGAGAATATCACAAAGTGGCTGGATCCAACTGCTGCCGCCCTTAGCAGAGATGCTTTGGCAAAAATTGTATACTCAAGATTGTTTGACTGGCTGGTAGACAAAATTAATAATTCGATTGGACAGGATCCCGATTCGAAGTTCTTGATTGGAGTGCTGGATATCTATGGATTTGAGAGTTTCAAGACAAACAGTTTTGAGCAATTTTGCATCAACTTGACTAATGAAAAGCTTCAGCAGCATTTTAATCAGCATGTTTTCAAGATGGAGCAAGAAGAGTATACAAAAGAGGAAATTGATTGGAGCTATATTGATTTTGTTGATAATCAAGACATCCTTGATCTCATTGAAAAGAAACCTGGTGGTATTATTGCCCTTCTGGATGAAGCATGTATGTTCCCCAGATCAACTCATGAAACATTTGCTCAAAAGTTGTATCAAACGTTCAAAAATCATAAACGCTTCAGCAAACCAAAATTATCCCGGAGTGACTTCACGATTGCTCATTATGCTGGTGATGTCACCTATCAAACTGATTTATTTCTGGACAAAAATAAAGACTATGTTGTTGCTGAACACCAAGCGCTCTTGAGCGCTTCCAAATGCTTCTTTGTGTCACGTTTGTTTCCTCAATTAGCTGAAGAATCATCCAAATCTTCAAAATTCTCATCAATAGGTTCCCGTTTCAAGCTACAATTAGTATCACTGCTGGAAACTCTAAGTGCTACCGAGCCGCATTACATTCGATGTGTAAAGCCCAATAATCTTCTAAAGCCTTCTATCTTCGAGAATAAGAATATATTGCAACAATTACGATGTGGGGGAGTCATGGAGGCAATTAGGATAAGTTGTGCCGGGTTTCCAACGAGGAAAACATTTGACGAATTTGTTGACCGATTCGGACTCCTTGCTCCTGAAGTTTTGGATGGGAGCTCTGATGAAGTGACTGCTTGCAAGAGGCTTCTAGAGAAGGTCGGACTTAAAGGATACCAGATTGGTAAGACAAAGGTGTTTCTTAGAGCCGGTCAGATGGCTGAACTCGATGCACTCAGGACTGAGATCTTAGGGAGATCAGCAAGTATTATTCAGCGGAAAGTTCGTTCTTATCTGGCTCGTAGAAGCTTTGTATCGCTTAGGAGGTCAGCTATACATCTGCAGTCTGCATGTAGAGGACAACTCGCTCGAGAAGTATTTGAGGGCATGAGGAGAGAAGCTTCTTCTTTAATGATTCAAAGGAATTTGCGCATGCATCTCTGCAGGAAAGCTTACAAAGAAAAGTACTCGTCAGCCGTTTCTATTCAAACTGGAATGCGTGGAATGGCTGCTCGCAATGAGCTGCGCTTCAGACGGCGATCTAAAGCAGCAATTGTTATCCAGAGCTATTGTCGACGATATTTGGCTCAGCTGCACTATAAGAGGTTAAAGAAAGCAGCAATCACCACTCAATCCATATGGCGAGGACGAGTTGCTCGTAAGGAACTACGGAAGCTGAAGATGGCTGCAAGGGAAACAGGAGCTCTTCAAGCTGCGAAAAATAAATTGGAAAAGCAAGTCGAAGAATTAACATGGAGACTGCAGTTGGAGAAGCGCATGAGGGCTGACTTGGAAGAAGCTAAGACCCAAGAAAATGAGAAGCTGCAATCTGCTTTGCAAGATATGCAGCTTCAGTTGAAAGAAACAAAAGCAATGTTTGAGAAGGAACGTGAAGCTGCGAAAAAGGTGGCGGATATTGTTCCGATTGTGAAGGAGGTTCCAGTTCTTGATAATGCAGCGATTGAGAAAATTTCGAGTGAAAATGAAAAGCTCAAGGCTTTGGTAAGTTCACTGGAAAAGAAAATTGATGAAACAGAGAAAAAGTATGAAGAGGCGAACAGAGTTAGTGAAGAAAGGTTGAAGCAAGCATCAGACGCTGAAACAAAAATTATTCAATTAAAGTCTGCTATGCAGAGGCTTGAAGAAAAATTCTCAAATATTGAATCTGAAAACCAGCTTCTTCGGCAGCAGACCTTCATGAAGACACCAGTAAAAAAAATGGCTGACCATCTTCCTATTGCAGCAGCAGAGAAATTGGAGAACGGTAACCATTTGATTGAAGATAACAGAACTGATGAGCAATTTGTAACGCCCGTGAAATCACTGAAGAGAATTAGCTCAGAATCTGAAATTAAGTTGAGTAGATCACATTTTGAACATCAACAAGAGAATGTTGATGCTCTTATCAGTTGTGTTATGAACAACACTGGGTTTAGTAACGGGAAGCCTATAGCTGCATTTACCATTTATAAATGTCTTCTTCACTGGAAATCTTTTGAAGCGGAAAAAACAAGCGTATTTGATCGACTAATTCAGATGATCGGATCCGCAATAGAGAATCAAGATAACAATGATCATCTAGCCTATTGGTTGTCGAACACATCCGCGCTACTGTTCTTGCTTCAACGAAGCTTGAAAGCTGCCGGCGCTCCGCGAAAACCGCCACCGTCAACGTCTATATTTGGAAGGATGACTATGGGCTTCCGTTCGTCTCCTTCTTCCAACAGTCTTGGATCTGCACTTAAGGTAGTTCGCCAAGTGGATGCTAAATATCCAGCTTTGCTATTCAAGCAGCAGCTGACAGCGTATGTCGAAAAAATATTCGGAATTATCCGAGATAACTTGAAGAAGGAGTTGACAACATTGCTTTCGTCGTGTATCCAAGCACCAAGAACATCGAAAGGAGTGTTACGATCGGGACGATCATTTGGGAAAGATACTCAAACAAATTACTGGCTGAGCATCATAGAACACCTCAACTTGCTTCTCTGTACATTGAAAGAAAATTTTGTTCCGCAAATTCTTATCCAGAATGTCTTTGTTCAAAACTTTTCGTATATTAATGTTCAACTCTTCAATAGCCTCCTTCTCCGACGAGAATGTTGTACGTTTAGCAATGGGGAATACGTTAAGTCCGGGTTAGCCGAGTTGGAGCTCTGGTGTTGCCAGGCAAAGGAGGAGTATGCTGGTGCTTCTTGGGATGAGCTTAAACACATAAGACAAGCTGTTGGCTTCTTGGTTATACATCAGAAATACAGGATTTCCTATGATGAAATCACCAATGATCTTTGCCCTATCCTGAGTGTCCAGCAGCTTTATAGAATATGTACGCTCTACTGGGACGACAACTACAACACTCGAAGCGTATCACCCGGAGTAATATCCAGCATGAGAGTGCTCATGACAGAGGATTCCAACAATGCAGTTAGCAGTTCCTTCCTATTAGATGACAATTCCAGCATCCCCTTCTCGGTCGAAGACCTCTCGAACTCGCTGCAAGAGAAAGATTTCTCCGGCGTGAAGCCTGCCGATGAACTACTCGAGAACCCCGCCTTCCAATTTTTACACGACTCAGAAATGTTGTTTTTGTATCCTCCCACAAAGAAAGGTCCCTCTCCTTGA 4578 42.29 MASTTGLVGVGSLVWLEDSEEAWIEGEVLEVRGEEIKVLCTSGKTVAVKAANVYPKDSEVPPCGVDDMTKLAYLHEPGVLHNLKLRYDINEIYTYTGNILIAVNPFTRLPHLYDSYMMAQYKGAALGELSPHPFAIADAAYRLMVNEKKSQSILVSGESGAGKTESTKLLMRYLAYMGGRAAAEGRSVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDQGGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAGPPEDVKKYKLENPRSFHYLNQSNCYELDEIDDAKEYIATRKAMEVVGISSDEQDGIFRVVAAILHLGNIEFAKGKEADSSVPKDEKSWFHLKTAAELFMCDEKALEDSLCKRVIVTRDENITKWLDPTAAALSRDALAKIVYSRLFDWLVDKINNSIGQDPDSKFLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIDFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKNHKRFSKPKLSRSDFTIAHYAGDVTYQTDLFLDKNKDYVVAEHQALLSASKCFFVSRLFPQLAEESSKSSKFSSIGSRFKLQLVSLLETLSATEPHYIRCVKPNNLLKPSIFENKNILQQLRCGGVMEAIRISCAGFPTRKTFDEFVDRFGLLAPEVLDGSSDEVTACKRLLEKVGLKGYQIGKTKVFLRAGQMAELDALRTEILGRSASIIQRKVRSYLARRSFVSLRRSAIHLQSACRGQLAREVFEGMRREASSLMIQRNLRMHLCRKAYKEKYSSAVSIQTGMRGMAARNELRFRRRSKAAIVIQSYCRRYLAQLHYKRLKKAAITTQSIWRGRVARKELRKLKMAARETGALQAAKNKLEKQVEELTWRLQLEKRMRADLEEAKTQENEKLQSALQDMQLQLKETKAMFEKEREAAKKVADIVPIVKEVPVLDNAAIEKISSENEKLKALVSSLEKKIDETEKKYEEANRVSEERLKQASDAETKIIQLKSAMQRLEEKFSNIESENQLLRQQTFMKTPVKKMADHLPIAAAEKLENGNHLIEDNRTDEQFVTPVKSLKRISSESEIKLSRSHFEHQQENVDALISCVMNNTGFSNGKPIAAFTIYKCLLHWKSFEAEKTSVFDRLIQMIGSAIENQDNNDHLAYWLSNTSALLFLLQRSLKAAGAPRKPPPSTSIFGRMTMGFRSSPSSNSLGSALKVVRQVDAKYPALLFKQQLTAYVEKIFGIIRDNLKKELTTLLSSCIQAPRTSKGVLRSGRSFGKDTQTNYWLSIIEHLNLLLCTLKENFVPQILIQNVFVQNFSYINVQLFNSLLLRRECCTFSNGEYVKSGLAELELWCCQAKEEYAGASWDELKHIRQAVGFLVIHQKYRISYDEITNDLCPILSVQQLYRICTLYWDDNYNTRSVSPGVISSMRVLMTEDSNNAVSSSFLLDDNSSIPFSVEDLSNSLQEKDFSGVKPADELLENPAFQFLHDSEMLFLYPPTKKGPSP 1525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 10337844 10350814 - CmoCh17G013200.1 Cmo17g01320 401703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g01320 1525 Coils Coil 973 1049 - -
Cmo17g01320 1525 CDD MyosinXI_CBD 1111 1478 IPR037975 GO:0007015
Cmo17g01320 1525 SMART iq_5 831 853 IPR000048 GO:0005515
Cmo17g01320 1525 SMART iq_5 783 805 IPR000048 GO:0005515
Cmo17g01320 1525 SMART iq_5 854 876 IPR000048 GO:0005515
Cmo17g01320 1525 SMART iq_5 758 780 IPR000048 GO:0005515
Cmo17g01320 1525 SMART iq_5 735 757 IPR000048 GO:0005515
Cmo17g01320 1525 SMART iq_5 806 828 IPR000048 GO:0005515
Cmo17g01320 1525 Gene3D Myosin VI head, motor domain, U50 subdomain 313 602 - -
Cmo17g01320 1525 Gene3D Kinesin motor domain 66 663 IPR036961 -
Cmo17g01320 1525 SMART MYSc_2a 58 734 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo17g01320 1525 Gene3D - 736 785 - -
Cmo17g01320 1525 Gene3D - 786 833 - -
Cmo17g01320 1525 Gene3D - 834 883 - -
Cmo17g01320 1525 PRINTS Myosin heavy chain signature 150 175 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo17g01320 1525 PRINTS Myosin heavy chain signature 93 112 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo17g01320 1525 PRINTS Myosin heavy chain signature 483 511 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo17g01320 1525 PRINTS Myosin heavy chain signature 197 224 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo17g01320 1525 PRINTS Myosin heavy chain signature 430 458 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo17g01320 1525 Pfam IQ calmodulin-binding motif 787 805 IPR000048 GO:0005515
Cmo17g01320 1525 Pfam IQ calmodulin-binding motif 738 756 IPR000048 GO:0005515
Cmo17g01320 1525 Pfam IQ calmodulin-binding motif 760 777 IPR000048 GO:0005515
Cmo17g01320 1525 Pfam IQ calmodulin-binding motif 857 876 IPR000048 GO:0005515
Cmo17g01320 1525 Pfam IQ calmodulin-binding motif 834 853 IPR000048 GO:0005515
Cmo17g01320 1525 Gene3D - 668 732 - -
Cmo17g01320 1525 ProSiteProfiles IQ motif profile. 855 884 IPR000048 GO:0005515
Cmo17g01320 1525 ProSiteProfiles IQ motif profile. 738 762 IPR000048 GO:0005515
Cmo17g01320 1525 Coils Coil 878 951 - -
Cmo17g01320 1525 ProSiteProfiles Dilute domain profile. 1160 1455 IPR002710 -
Cmo17g01320 1525 ProSiteProfiles IQ motif profile. 759 788 IPR000048 GO:0005515
Cmo17g01320 1525 Pfam Myosin N-terminal SH3-like domain 11 52 IPR004009 GO:0003774|GO:0005524|GO:0016459
Cmo17g01320 1525 Pfam DIL domain 1331 1434 IPR002710 -
Cmo17g01320 1525 ProSiteProfiles IQ motif profile. 832 861 IPR000048 GO:0005515
Cmo17g01320 1525 ProSiteProfiles Myosin motor domain profile. 63 733 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo17g01320 1525 Gene3D - 440 624 - -
Cmo17g01320 1525 Gene3D - 253 311 - -
Cmo17g01320 1525 PANTHER MYOSIN 7 1507 - -
Cmo17g01320 1525 SMART DIL_2 1330 1437 IPR002710 -
Cmo17g01320 1525 ProSiteProfiles IQ motif profile. 807 836 IPR000048 GO:0005515
Cmo17g01320 1525 ProSiteProfiles IQ motif profile. 784 813 IPR000048 GO:0005515
Cmo17g01320 1525 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 786 IPR027417 -
Cmo17g01320 1525 PANTHER MYOSIN-14 7 1507 - -
Cmo17g01320 1525 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 788 884 IPR027417 -
Cmo17g01320 1525 Pfam Myosin head (motor domain) 65 721 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cmo17g01320 1525 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 9 58 IPR004009 GO:0003774|GO:0005524|GO:0016459
Cmo17g01320 1525 CDD MYSc_Myo11 77 721 IPR036018 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo08g00050 Cmo17g01320 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00760 Cmo-Chr13:7379366 Cmo17g01320 Cmo-Chr17:10337844 1.28E-09 dispersed
Cmo17g00888 Cmo-Chr17:8068228 Cmo17g01320 Cmo-Chr17:10337844 0 dispersed
Cmo06g01289 Cmo-Chr6:9724770 Cmo17g01320 Cmo-Chr17:10337844 0 transposed
Cmo17g01320 Cmo-Chr17:10337844 Cmo08g00050 Cmo-Chr8:272375 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g01320 K10357 - csv:101208630 2843.91