Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g01333 ATGGCCGGTTTGGTCACCGGTTCCCAACACTATCCCCACGTCGCCAATGAGAGTCATCGTGGACCTGCATCATCATCGATGAAAATATGTCGAGTTTGTGGTGACGAAATTGGACTCAAAGATGATGGGAAAGTATTTGTGGCATGTCTTGTGTGTAATTTCCCTGTTTGTCGTCCTTGTTACGAGTACGAAAGGAGCGAAGGCAACAAGTGTTGTCCCCAATGCAACACTCGCTACAAGCGTCATAAAGGCTCGCCTAGAGTCATTGGTGACGACGAAGAAGCTGACGATGCAGACGATTTCGACGATGAATTCCCCATCAAACACCACAGTAACGATGAGTTCGAATCAAAACAGCCCAATCCTTCGGAACACGATAACTACAAGCAGCAGAATTGGCATCAAAACGTCCATAGTTCCTTCTCAGTTGCAGGCAGTGTGAAGGGGAAGGAGATGGAAGGCGAGAAGGAAAGTTATGGAAATGCTGAATGGAAGGAGAGAATAGAGAAGTGGAAAGTGAGGCAAGCAAAGAGAGGTTTGGGGAACAAAGATGATGATGGAAGTAACCATGATCAACCCCTAGAAGATGACTTCTTATTGGCAGAAGCCCGGCAACCACTGTGGCGGAAAGTTCCAATATCGTCGAGCAAAATCAGTCCATATCGGATAGTCATAGTCCTCCGCCTCGTAATTCTTGCGTTCTTCTTCCGCTTTCGGATCCTAACACCGGCCTACGATGCCTTCCCCTTGTGGCTCATCTCCGTCATATGCGAAATCTGGTTCGGCTTCTCCTGGATTCTGGATCAGTTCCCCAAATGGGCTCCCATCAACCGGGAGACCTACCTGGACCGGCTGTCCATGCGATTCGAGCGGGAGGGGGAGCCCAACCGTCTGGCTCCGATCGACTTCTTCGTCAGCTCGGTGGACCCTCTCAAGGAGCCGCCCATCATAACCGCCAACACGGTGCTGTCCATCCTGGCGGTGGACTATCCGGTGGACAAGGTGAGCTGCTACGTGTCGGATGACGGAGCGTCGATGCTGTTGTTTGACGCGCTGGCGGAGACAGCGGAGTTTGCTCGGAGATGGGTTCCGTTCTGCAAGAAGTTCAGCGTCGAGCCTAGGGCTCCGGAGTTCTACTTCTCACAGAAGATGGATTACTTGAAGGATAAGGTGCTGCCCAGTTTCGTGAAGGAGAGGAGGGCAATGAAGAGGGAATACGAAGAGTTCAAGGTGAGGATCAACGCGTTGGTGGCTAAGGCTCAGAAGAAACCAGAAGAGGGATGGGTTATGCAAGATGGCACTCCATGGCCTGGAAACCTCACCCGTGATCATCCTGGCATGATACAGGTGTATCTGGGAAGTGAAGGTGCACTTGATGTGGATGGTAAAGAGTTGCCTCGTCTTGTATATGTTTCTCGTGAGAAGCGCCCTGGATATCAGCACCACAAGAAAGCTGGTGCTATGAATGCTCTGGTTCGAGTCTCTGCAGTCCTCACTAATGCACCATTCATCTTAAATCTGGATTGTGATCACTACGTCAATAATAGCAAAGCTGTAAGGGAAGCCATGTGCTTTCTAATGGACCCTCAGCTTGGAAAGAAACTATGCTATATTCAGTTTCCTCAAAGATTTGATGGTATTGATCGTCACGACAGATATGCTAATCGGAATATTGTGTTCTTTGATATCAACATGCGAGGACTAGATGGAATTCAAGGCCCAGTTTATGTTGGCACAGGATGTGTCTTCAACAGGCAGGCTTTATATGGATATGAACCACCAGTATCTGAGAAACGGCCGAAGATGACATGCGATTGCTGGCCTTCCTGGTGTTTCTGCTGCTGCTGCGGTGGTTCAAGGAAGTCGAAGACGAAGAAGAAAGGAGAAAGAGGTTTGCTTGGAGGCCTGTTCTCAAGGAAGAAGAAAATGATGGGGAAGAGTTATGTAAGGAAAGGGTCTGGACCAGTTTTTGATCTTGAGGAGATCGAAGAAGGATTTGAAGGTTACGACGAGTTGGAGAAGTCATCACTTATGTCGCAAAAGAATTTCGAGAAAAGATTTGGACAGTCGCCTGTTTTCATCGCTTCCACTCTTAAGGAAGATGGAGGTCTTCCAGAAGGAATGAACAGCACATCACTCGTTAAAGAAGCCATCCATGTGATAAGCTGTGGTTATGAAGAGAAAACAGAATGGGGAAAAGAGATAGGTTGGATTTATGGTTCGGTCACTGAGGATATTTTGACAGGATTCAAGATGCATTGTAGAGGATGGAAGTCAGTGTACTGCATGCCACAGAGACCAGCTTTTAAGGGATCGGCTCCAATAAATCTTTCGGATCGTTTGCACCAAGTTCTGAGATGGGCACTGGGTTCTGTTGAAATCTTCCTCAGTCGACACTGCCCGCTGTGGTATGCTTATGGAGGAAAGCTAAAATGGCTCGAGAGGCTTGCCTACATCAACACCATTGTTTACCCTTTTACTTCCATTCCATTACTTGCTTACTGCACAATCCCTGCTGTTTGTCTTCTCACTGGAAAATTCATTATCCCCACCTTGACGAACTTAGCTAGTGTCTGGTTCATGGCCCTGTTTCTTTCCATCATTGCTACGGCTGTACTGGAGCTTCGATGGAGTGAAGTGAGTATCGAGGACTTGTGGCGTAATGAGCAATTTTGGGTGATTGGTGGTGTCTCTGCACATCTTTTTGCAGTGTTCCAAGGCCTGCTCAAGGTCCTTGGTGGTGTAGACACCAACTTCACAGTTACAGCAAAAGCAGCCGACGACACCGAGTTTGGAGAACTCTATCTTTTCAAGTGGACAACCCTCCTTATCCCGCCCACCACTCTCATAATCTTGAACATGGTGGGAGTGGTTGCTGGAGTTTCAGATGCTATTAACAATGGCTACGGTTCATGGGGTCCTCTGTTTGGAAAGCTATTTTTTGCTTTCTGGGTCATTGTTCATCTCTATCCTTTCCTCAAGGGTCTGATGGGAAGACAAAACAGGACGCCCACCATTGTAGTCCTTTGGTCCGTGCTTCTTGCATCCATTTTCTCACTGGTTTGGGTGCGAATTGATCCCTTCCTGCCCAAGCAAACTGGTCCAGTCCTCAAACAATGTGGAGTCGATTGCTAG 3135 48.04 MAGLVTGSQHYPHVANESHRGPASSSMKICRVCGDEIGLKDDGKVFVACLVCNFPVCRPCYEYERSEGNKCCPQCNTRYKRHKGSPRVIGDDEEADDADDFDDEFPIKHHSNDEFESKQPNPSEHDNYKQQNWHQNVHSSFSVAGSVKGKEMEGEKESYGNAEWKERIEKWKVRQAKRGLGNKDDDGSNHDQPLEDDFLLAEARQPLWRKVPISSSKISPYRIVIVLRLVILAFFFRFRILTPAYDAFPLWLISVICEIWFGFSWILDQFPKWAPINRETYLDRLSMRFEREGEPNRLAPIDFFVSSVDPLKEPPIITANTVLSILAVDYPVDKVSCYVSDDGASMLLFDALAETAEFARRWVPFCKKFSVEPRAPEFYFSQKMDYLKDKVLPSFVKERRAMKREYEEFKVRINALVAKAQKKPEEGWVMQDGTPWPGNLTRDHPGMIQVYLGSEGALDVDGKELPRLVYVSREKRPGYQHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYVNNSKAVREAMCFLMDPQLGKKLCYIQFPQRFDGIDRHDRYANRNIVFFDINMRGLDGIQGPVYVGTGCVFNRQALYGYEPPVSEKRPKMTCDCWPSWCFCCCCGGSRKSKTKKKGERGLLGGLFSRKKKMMGKSYVRKGSGPVFDLEEIEEGFEGYDELEKSSLMSQKNFEKRFGQSPVFIASTLKEDGGLPEGMNSTSLVKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWKSVYCMPQRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYAYGGKLKWLERLAYINTIVYPFTSIPLLAYCTIPAVCLLTGKFIIPTLTNLASVWFMALFLSIIATAVLELRWSEVSIEDLWRNEQFWVIGGVSAHLFAVFQGLLKVLGGVDTNFTVTAKAADDTEFGELYLFKWTTLLIPPTTLIILNMVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVLWSVLLASIFSLVWVRIDPFLPKQTGPVLKQCGVDC 1044
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 10447348 10451887 + CmoCh17G013330.1 Cmo17g01333 401716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g01333 1044 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 103 IPR013083 -
Cmo17g01333 1044 Coils Coil 399 419 - -
Cmo17g01333 1044 Pfam Cellulose synthase 301 1037 IPR005150 GO:0016020|GO:0016760|GO:0030244
Cmo17g01333 1044 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 24 113 - -
Cmo17g01333 1044 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 153 1044 - -
Cmo17g01333 1044 SUPERFAMILY Nucleotide-diphospho-sugar transferases 315 863 IPR029044 -
Cmo17g01333 1044 SUPERFAMILY RING/U-box 18 100 - -
Cmo17g01333 1044 MobiDBLite consensus disorder prediction 1 24 - -
Cmo17g01333 1044 Pfam Zinc-binding RING-finger 25 96 IPR027934 -
Cmo17g01333 1044 MobiDBLite consensus disorder prediction 102 123 - -
Cmo17g01333 1044 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 412 593 IPR029044 -
Cmo17g01333 1044 MobiDBLite consensus disorder prediction 83 130 - -
Cmo17g01333 1044 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 3 [UDP-FORMING]-RELATED 153 1044 - -
Cmo17g01333 1044 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 3 [UDP-FORMING]-RELATED 24 113 - -
Cmo17g01333 1044 CDD mRING-HC-C4C4_CesA_plant 28 78 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00491 Cmo-Chr10:2193786 Cmo17g01333 Cmo-Chr17:10447348 0 dispersed
Cmo11g00448 Cmo-Chr11:2188522 Cmo17g01333 Cmo-Chr17:10447348 0 dispersed
Cmo13g00617 Cmo-Chr13:6712859 Cmo17g01333 Cmo-Chr17:10447348 0 dispersed
Cmo17g01333 Cmo-Chr17:10447348 Cmo03g01063 Cmo-Chr3:7914116 0 dispersed
Cmo17g01333 Cmo-Chr17:10447348 Cmo07g01364 Cmo-Chr7:7723464 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g01333 K10999 - csv:101205733 1965.66