Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g01367 ATGGGTTGTTTTCCTTGTTTCGATTCGAGGGAGGAGGAGAAGCTAAATCCTGAAAGGGAAAGCGATGATGGTCAGCAAGACCATCCAATGGTTCCACCGAACATTGCGAAATTACCTTCTGGCACAGACAAACTTGGATCCAAAAGTAATGGAGGTTCCAAAAGGGAACAGCAGATTCCCAAGGATGCTCCTCTCGTCAATATTTCTGCTCAAACATTCACTTTCCGGGAGCTTGCTATTGCGACAAAGAACTTTAGACCCGAATGTTTTATTGGGGAAGGAGGATTTGGACGTGTATACAAAGGGCGGCTCGAAAGCACAGGCCAGATTGTTGCTGTTAAACAGTTGGATAGGAATGGTCTTCAAGGCAACAGAGAATTTCTAGTGGAGGTTCTCATGCTTAGTCTTCTACATCATCCAAATTTGGTGAATCTGATTGGTTACTGTGCTGATGGGGATCAACGACTTCTTGTGTATGAGTTCATGCCTTTGGGATCATTGGAAGATCATCTTCACGAAATTCCACCTGATAAGGAACCCCTTGATTGGAACACGAGAATGAAAATAGCTGCTGGTGCAGCCCGAGGTTTAGAGTACTTGCATGACAAGGCAAACCCTCCAGTTATTTATAGAGACTTCAAATCCTCCAATATATTACTTGAGGAAGGATACCATCCAAAGCTTTCTGATTTTGGCCTCGCCAAGCTTGGCCCTGTTGGAGATAAATCTCATGTTTCCACCAGGGTCATGGGGACTTATGGTTACTGTGCTCCTGAGTACGCCATGACTGGACAATTAACCGTCAAGTCTGATGTTTATAGTTTCGGTGTTGTGTTCTTAGAGTTGATTACTGGACGGAGAGCCATTGATAGCACCCGACCCCAAGGTGAACAGAACCTCGTCACATGGGCACGCCCGTTTTTTAACGATCGCAGAAGATTCTCGAAACTGGCCGATCCACAGTTGCAGGGGCGGTATCCCATGCGAGGTCTCTACCAGGCTTTAGCTGTGGCATCCATGTGTACCCAAGAACAAGCTGCAGCCCGTCCACTCATTGGAGATGTGGTCACTGCCCTGTCTTATTTAGCAAATCAATCCTATGATCCAAGTTCTCCTTCAGGTACAGCTGCTTCTCAGAGAGGTTCTGGTGATCGGGACGAAAGACCGAACAGTGGCGAGAAAGGTGGAGGGGTGGTAAAGAATGAAGAAGGGGGAGCATCTGGACGAAGGTGGGCACTGGATGGTCCGGAGAAGGACGACTCCCCCAGGGAGACTGCAAGGATTTTGAATAGGGATTTAGACAGAGAGCGTGCGGTCGCTGAGGCGAAGATGTGGGGAGAGAATTGGCGAGAAAAAAGACGACAGAGCACGCAAGGCAGTTTTGATGGGTCTAATGGATAA 1401 47.61 MGCFPCFDSREEEKLNPERESDDGQQDHPMVPPNIAKLPSGTDKLGSKSNGGSKREQQIPKDAPLVNISAQTFTFRELAIATKNFRPECFIGEGGFGRVYKGRLESTGQIVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHEIPPDKEPLDWNTRMKIAAGAARGLEYLHDKANPPVIYRDFKSSNILLEEGYHPKLSDFGLAKLGPVGDKSHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRRAIDSTRPQGEQNLVTWARPFFNDRRRFSKLADPQLQGRYPMRGLYQALAVASMCTQEQAAARPLIGDVVTALSYLANQSYDPSSPSGTAASQRGSGDRDERPNSGEKGGGVVKNEEGGASGRRWALDGPEKDDSPRETARILNRDLDRERAVAEAKMWGENWREKRRQSTQGSFDGSNG 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 10614486 10618629 - CmoCh17G013670.1 Cmo17g01367 401750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g01367 466 MobiDBLite consensus disorder prediction 412 457 - -
Cmo17g01367 466 SUPERFAMILY Protein kinase-like (PK-like) 66 359 IPR011009 -
Cmo17g01367 466 Pfam Protein kinase domain 90 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo17g01367 466 MobiDBLite consensus disorder prediction 7 26 - -
Cmo17g01367 466 ProSiteProfiles Protein kinase domain profile. 85 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo17g01367 466 MobiDBLite consensus disorder prediction 366 380 - -
Cmo17g01367 466 Gene3D Transferase(Phosphotransferase) domain 1 162 375 - -
Cmo17g01367 466 PANTHER OS07G0668900 PROTEIN 1 461 - -
Cmo17g01367 466 CDD STKc_IRAK 91 359 - -
Cmo17g01367 466 Gene3D Phosphorylase Kinase; domain 1 47 161 - -
Cmo17g01367 466 PANTHER SERINE/THREONINE-PROTEIN KINASE PBS1 1 461 - -
Cmo17g01367 466 MobiDBLite consensus disorder prediction 366 466 - -
Cmo17g01367 466 MobiDBLite consensus disorder prediction 1 61 - -
Cmo17g01367 466 ProSitePatterns Protein kinases ATP-binding region signature. 91 114 IPR017441 GO:0005524
Cmo17g01367 466 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01023 Cmo-Chr4:5127032 Cmo17g01367 Cmo-Chr17:10614486 6.76E-178 dispersed
Cmo06g01473 Cmo-Chr6:10592585 Cmo17g01367 Cmo-Chr17:10614486 0 dispersed
Cmo14g01676 Cmo-Chr14:13208212 Cmo17g01367 Cmo-Chr17:10614486 0 dispersed
Cmo19g00148 Cmo-Chr19:815151 Cmo17g01367 Cmo-Chr17:10614486 1.26E-104 dispersed
Cmo17g01367 Cmo-Chr17:10614486 Cmo08g00010 Cmo-Chr8:55204 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75027 PF00069 Pkinase 4.40E-45 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g01367 K13430 - csv:101219880 896.73