Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g01372 ATGCACTGTGAGTCCTGCAAAACCAAGGTGTCTAAATACTTGAGAGGTTGTGAGGGAGTGGAGGAAGTGACGGCGGATGTGGGGAATGCAAAAGTGGTAATAAAGGGAAAGGACCTGAAGCCTAACAAGATATTGGAACAGATTCGGAGAAAGTACTCCAAAAATGCCCAACTTATTTCTCCTAAGCCCCTCCCCGAAACCCCCAACCAAACCAAGGCTGACCCTCCTAAGAAGGAAGAGGTGAAGACCGTGGAGCTCAAAATGGGGATGCACTGTGAAGGCTGTGTAAATGACATCAAGCAGCGCGTTGGAAGAATGGAGGGAGTGATGGCAGTGGAAGCAGATAGAGAGAGTTCGAAAGTGAGGGTGAAGGGAATAGTGGATCCTCCCAAGCTGGTGGAAGCCATTAAAAAGAAAATGAAGAAGAACGTAGAGGTGGTGAATAAGAAGCAAGAGAAAGAAGAAAAATCAGCAAACAAACCGGGCGGCGGCGGCGGCGGCAACAACAACAACCTCAACAACCAGGATGGAAAGCAAGAGAAAGAAAACTTGGCGTTTAAATATCCTCCTCAGTACTCTTTGCATCATATTTACCCTAATCAAACCTTCAGTGATGATAATGTGTTTTCTTGCTCTATCATAGGAACCCACCTTTGTTGGGTCCTCCACCCATCCCCACACCCATTAGCAGACATGGCAGAGCACAACAACAAGAAGCCATCACCAGCAGCAGCAGCGCCACCACCACCATCATCACCCGCTCCAACACCACCATCCTCGGATATCATAATTGCAAACCCAAACAAAGATCAAAACAAGAAGCACCAACAACAATTGGCTCCTAAGCGTACTTCCAATAAAGACCGCCACAAGAAAGTGGATGGCCGTGGCCGTAGGATCCGCATGCCTGCCCTCTGCGCCGCCCGCGTCTTCCAATTGACCCGCGAATTAGGCCATAAGACCGACGGCGAGACCATCCAGTGGCTCCTCCAGCAAGCTGAGCCCTCCATCATCGCCGCCACTGGCTCCGGTACCATCCCTGCCTCTGCCCTCCATGCGGCCGGCGTCTCCCTCTCGGACCCCGACACCTCCGTCTCTGTGTCCGCCACCCTGACCCCCAAAATTGACGCCGTCCCAAGACTGAATTGGGCGATGATGGGGGCCAATTTGAACAGATCTCACATGGGTACGCCCGGATTCTGGCCGTCCCTAGGCGGAATCGGGCCGGGGTTCGTCAGCGAGAATCCGGGTTCGATTATGCCCAAATTCGGGTTCCATGGATTCGAATTTCAGGGGATGAATTTGGGATCCGTGAATTTCCCGACGATAATCGGGAATCAGCAGCCGCAGCAGCAAATACCGGGACTGGAGCTAGGGCTTTCGCAGGAGGGGAATAATGTAAGAGGGATGTTGAACCCGCCTTCGTATTCCCAAATCTATCACCAAATAGGGCAGAGTCGGGACCCCTCTGCGGCGCCATTGGAGCAGGACCAAGCTCCTGATAAAGACAACTCTCAGGAATCGAGATGA 1530 52.16 MHCESCKTKVSKYLRGCEGVEEVTADVGNAKVVIKGKDLKPNKILEQIRRKYSKNAQLISPKPLPETPNQTKADPPKKEEVKTVELKMGMHCEGCVNDIKQRVGRMEGVMAVEADRESSKVRVKGIVDPPKLVEAIKKKMKKNVEVVNKKQEKEEKSANKPGGGGGGNNNNLNNQDGKQEKENLAFKYPPQYSLHHIYPNQTFSDDNVFSCSIIGTHLCWVLHPSPHPLADMAEHNNKKPSPAAAAPPPPSSPAPTPPSSDIIIANPNKDQNKKHQQQLAPKRTSNKDRHKKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIIAATGSGTIPASALHAAGVSLSDPDTSVSVSATLTPKIDAVPRLNWAMMGANLNRSHMGTPGFWPSLGGIGPGFVSENPGSIMPKFGFHGFEFQGMNLGSVNFPTIIGNQQPQQQIPGLELGLSQEGNNVRGMLNPPSYSQIYHQIGQSRDPSAAPLEQDQAPDKDNSQESR 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 10656012 10658710 - CmoCh17G013720.1 Cmo17g01372 401755

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g01372 509 MobiDBLite consensus disorder prediction 144 177 - -
Cmo17g01372 509 ProSiteProfiles Heavy-metal-associated domain profile. 89 138 IPR006121 GO:0046872
Cmo17g01372 509 Coils Coil 136 157 - -
Cmo17g01372 509 MobiDBLite consensus disorder prediction 258 274 - -
Cmo17g01372 509 SUPERFAMILY HMA, heavy metal-associated domain 81 139 IPR036163 GO:0046872
Cmo17g01372 509 ProSiteProfiles Heavy-metal-associated domain profile. 1 49 IPR006121 GO:0046872
Cmo17g01372 509 MobiDBLite consensus disorder prediction 231 299 - -
Cmo17g01372 509 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 262 509 IPR005333 GO:0003700
Cmo17g01372 509 Gene3D - 1 66 - -
Cmo17g01372 509 Pfam Heavy-metal-associated domain 1 50 IPR006121 GO:0046872
Cmo17g01372 509 Pfam Heavy-metal-associated domain 89 142 IPR006121 GO:0046872
Cmo17g01372 509 Pfam TCP family transcription factor 284 366 IPR017887 -
Cmo17g01372 509 MobiDBLite consensus disorder prediction 482 509 - -
Cmo17g01372 509 MobiDBLite consensus disorder prediction 163 177 - -
Cmo17g01372 509 ProSiteProfiles TCP domain profile. 286 340 IPR017887 -
Cmo17g01372 509 CDD HMA 89 138 IPR006121 GO:0046872
Cmo17g01372 509 MobiDBLite consensus disorder prediction 144 159 - -
Cmo17g01372 509 MobiDBLite consensus disorder prediction 275 291 - -
Cmo17g01372 509 MobiDBLite consensus disorder prediction 242 257 - -
Cmo17g01372 509 CDD HMA 1 48 IPR006121 GO:0046872
Cmo17g01372 509 SUPERFAMILY HMA, heavy metal-associated domain 1 50 IPR036163 GO:0046872
Cmo17g01372 509 PANTHER TRANSCRIPTION FACTOR TCP20-LIKE 262 509 - -
Cmo17g01372 509 Gene3D - 78 144 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g01372 - - - cmos:111456629 571.237
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01602 Cmo-Chr11:11466057 Cmo17g01372 Cmo-Chr17:10656012 3.81E-61 dispersed
Cmo14g00744 Cmo-Chr14:3809147 Cmo17g01372 Cmo-Chr17:10656012 3.69E-68 dispersed
Cmo17g01372 Cmo-Chr17:10656012 Cmo11g00159 Cmo-Chr11:799344 4.65E-37 dispersed
Cmo17g01372 Cmo-Chr17:10656012 Cmo08g00005 Cmo-Chr8:30932 2.06E-150 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo15g00816 . 31 253 TCP Transcription Factor Family AT5G23280 62.2 1.3e-64 243.8
Cmo04g02347 . 36 264 TCP Transcription Factor Family AT5G23280 61.0 3.0e-64 242.7
Cmo04g01331 . 145 359 TCP Transcription Factor Family AT5G23280 61.4 1.1e-63 240.7
Cmo18g00812 . 33 230 TCP Transcription Factor Family AT5G23280 58.0 1.2e-57 220.7
Cmo17g00006 . 65 341 TCP Transcription Factor Family AT2G45680 50.5 5.0e-57 219.2
Cmo18g01183 CST 56 146 TCP Transcription Factor Family AT3G47620 92.3 5.3e-41 166.4
Cmo04g01729 CST 59 153 TCP Transcription Factor Family AT3G47620 88.7 5.8e-40 162.9
Cmo13g01176 CCT,ECH 36 134 TCP Transcription Factor Family AT3G47620 83.8 3.8e-39 160.2
Cmo04g01953 . 130 212 TCP Transcription Factor Family AT3G47620 90.4 1.7e-36 151.4
Cmo04g01953 . 130 222 TCP Transcription Factor Family AT1G69690 82.8 2.0e-36 150.6
Cmo14g00744 . 1 313 TCP Transcription Factor Family AT3G27010 55.3 1.7e-61 233.8
Cmo11g01602 . 29 272 TCP Transcription Factor Family AT3G27010 55.5 4.5e-54 209.1
Cmo17g01372 . 269 486 TCP Transcription Factor Family AT3G27010 53.2 6.4e-48 188.7
Cmo15g00816 . 1 252 TCP Transcription Factor Family AT5G08330 60.2 9.7e-65 244.2
Cmo04g02347 . 1 263 TCP Transcription Factor Family AT5G08330 56.7 9.1e-63 237.7
Cmo04g01331 . 117 357 TCP Transcription Factor Family AT5G08330 55.2 1.5e-60 230.3
Cmo18g00812 . 10 228 TCP Transcription Factor Family AT5G08330 56.2 2.3e-58 223.0
Cmo11g00214 CCT,CST 31 179 TCP Transcription Factor Family AT5G60970 56.7 2.3e-38 157.1
Cmo14g01189 . 28 139 TCP Transcription Factor Family AT3G02150 66.4 2.6e-37 153.7
Cmo11g02005 . 8 162 TCP Transcription Factor Family AT2G31070 54.3 1.7e-36 151.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012904 0 1 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 1 1 0 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11454 PF03634 TCP 1.70E-29 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo17g01372 Cmo_Chr17 FPKM 5.280118 5.216999 4.957787 5.452234 10.349098 10.004256 10.257993 14.718225 14.13913 14.412863