Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g01372 ATGCACTGTGAGTCCTGCAAAACCAAGGTGTCTAAATACTTGAGAGGTTGTGAGGGAGTGGAGGAAGTGACGGCGGATGTGGGGAATGCAAAAGTGGTAATAAAGGGAAAGGACCTGAAGCCTAACAAGATATTGGAACAGATTCGGAGAAAGTACTCCAAAAATGCCCAACTTATTTCTCCTAAGCCCCTCCCCGAAACCCCCAACCAAACCAAGGCTGACCCTCCTAAGAAGGAAGAGGTGAAGACCGTGGAGCTCAAAATGGGGATGCACTGTGAAGGCTGTGTAAATGACATCAAGCAGCGCGTTGGAAGAATGGAGGGAGTGATGGCAGTGGAAGCAGATAGAGAGAGTTCGAAAGTGAGGGTGAAGGGAATAGTGGATCCTCCCAAGCTGGTGGAAGCCATTAAAAAGAAAATGAAGAAGAACGTAGAGGTGGTGAATAAGAAGCAAGAGAAAGAAGAAAAATCAGCAAACAAACCGGGCGGCGGCGGCGGCGGCAACAACAACAACCTCAACAACCAGGATGGAAAGCAAGAGAAAGAAAACTTGGCGTTTAAATATCCTCCTCAGTACTCTTTGCATCATATTTACCCTAATCAAACCTTCAGTGATGATAATGTGTTTTCTTGCTCTATCATAGGAACCCACCTTTGTTGGGTCCTCCACCCATCCCCACACCCATTAGCAGACATGGCAGAGCACAACAACAAGAAGCCATCACCAGCAGCAGCAGCGCCACCACCACCATCATCACCCGCTCCAACACCACCATCCTCGGATATCATAATTGCAAACCCAAACAAAGATCAAAACAAGAAGCACCAACAACAATTGGCTCCTAAGCGTACTTCCAATAAAGACCGCCACAAGAAAGTGGATGGCCGTGGCCGTAGGATCCGCATGCCTGCCCTCTGCGCCGCCCGCGTCTTCCAATTGACCCGCGAATTAGGCCATAAGACCGACGGCGAGACCATCCAGTGGCTCCTCCAGCAAGCTGAGCCCTCCATCATCGCCGCCACTGGCTCCGGTACCATCCCTGCCTCTGCCCTCCATGCGGCCGGCGTCTCCCTCTCGGACCCCGACACCTCCGTCTCTGTGTCCGCCACCCTGACCCCCAAAATTGACGCCGTCCCAAGACTGAATTGGGCGATGATGGGGGCCAATTTGAACAGATCTCACATGGGTACGCCCGGATTCTGGCCGTCCCTAGGCGGAATCGGGCCGGGGTTCGTCAGCGAGAATCCGGGTTCGATTATGCCCAAATTCGGGTTCCATGGATTCGAATTTCAGGGGATGAATTTGGGATCCGTGAATTTCCCGACGATAATCGGGAATCAGCAGCCGCAGCAGCAAATACCGGGACTGGAGCTAGGGCTTTCGCAGGAGGGGAATAATGTAAGAGGGATGTTGAACCCGCCTTCGTATTCCCAAATCTATCACCAAATAGGGCAGAGTCGGGACCCCTCTGCGGCGCCATTGGAGCAGGACCAAGCTCCTGATAAAGACAACTCTCAGGAATCGAGATGA 1530 52.16 MHCESCKTKVSKYLRGCEGVEEVTADVGNAKVVIKGKDLKPNKILEQIRRKYSKNAQLISPKPLPETPNQTKADPPKKEEVKTVELKMGMHCEGCVNDIKQRVGRMEGVMAVEADRESSKVRVKGIVDPPKLVEAIKKKMKKNVEVVNKKQEKEEKSANKPGGGGGGNNNNLNNQDGKQEKENLAFKYPPQYSLHHIYPNQTFSDDNVFSCSIIGTHLCWVLHPSPHPLADMAEHNNKKPSPAAAAPPPPSSPAPTPPSSDIIIANPNKDQNKKHQQQLAPKRTSNKDRHKKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIIAATGSGTIPASALHAAGVSLSDPDTSVSVSATLTPKIDAVPRLNWAMMGANLNRSHMGTPGFWPSLGGIGPGFVSENPGSIMPKFGFHGFEFQGMNLGSVNFPTIIGNQQPQQQIPGLELGLSQEGNNVRGMLNPPSYSQIYHQIGQSRDPSAAPLEQDQAPDKDNSQESR 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 10656012 10658710 - CmoCh17G013720.1 Cmo17g01372 401755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g01372 509 MobiDBLite consensus disorder prediction 144 177 - -
Cmo17g01372 509 ProSiteProfiles Heavy-metal-associated domain profile. 89 138 IPR006121 GO:0046872
Cmo17g01372 509 Coils Coil 136 157 - -
Cmo17g01372 509 MobiDBLite consensus disorder prediction 258 274 - -
Cmo17g01372 509 SUPERFAMILY HMA, heavy metal-associated domain 81 139 IPR036163 GO:0046872
Cmo17g01372 509 ProSiteProfiles Heavy-metal-associated domain profile. 1 49 IPR006121 GO:0046872
Cmo17g01372 509 MobiDBLite consensus disorder prediction 231 299 - -
Cmo17g01372 509 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 262 509 IPR005333 GO:0003700
Cmo17g01372 509 Gene3D - 1 66 - -
Cmo17g01372 509 Pfam Heavy-metal-associated domain 1 50 IPR006121 GO:0046872
Cmo17g01372 509 Pfam Heavy-metal-associated domain 89 142 IPR006121 GO:0046872
Cmo17g01372 509 Pfam TCP family transcription factor 284 366 IPR017887 -
Cmo17g01372 509 MobiDBLite consensus disorder prediction 482 509 - -
Cmo17g01372 509 MobiDBLite consensus disorder prediction 163 177 - -
Cmo17g01372 509 ProSiteProfiles TCP domain profile. 286 340 IPR017887 -
Cmo17g01372 509 CDD HMA 89 138 IPR006121 GO:0046872
Cmo17g01372 509 MobiDBLite consensus disorder prediction 144 159 - -
Cmo17g01372 509 MobiDBLite consensus disorder prediction 275 291 - -
Cmo17g01372 509 MobiDBLite consensus disorder prediction 242 257 - -
Cmo17g01372 509 CDD HMA 1 48 IPR006121 GO:0046872
Cmo17g01372 509 SUPERFAMILY HMA, heavy metal-associated domain 1 50 IPR036163 GO:0046872
Cmo17g01372 509 PANTHER TRANSCRIPTION FACTOR TCP20-LIKE 262 509 - -
Cmo17g01372 509 Gene3D - 78 144 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01602 Cmo-Chr11:11466057 Cmo17g01372 Cmo-Chr17:10656012 3.81E-61 dispersed
Cmo14g00744 Cmo-Chr14:3809147 Cmo17g01372 Cmo-Chr17:10656012 3.69E-68 dispersed
Cmo17g01372 Cmo-Chr17:10656012 Cmo11g00159 Cmo-Chr11:799344 4.65E-37 dispersed
Cmo17g01372 Cmo-Chr17:10656012 Cmo08g00005 Cmo-Chr8:30932 2.06E-150 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11454 PF03634 TCP 1.70E-29 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g01372 - - cmos:111456629 571.237