Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g01376 ATGTATTTGAGACTCAGGGGCATTGGTAATATGGGCGATGGTTCTATGGATGACATGAAAGGAACTAGAGTTTCTTTGATCGAGTCATCGGCTTCGAGATTAATGAAGAGGTCACGCGCCCCTGGAAGCGGTCCCCAAGTCCCTTCCTGTATGGTTGATGGTTGTAGCTCAGACCTTAGCAAATGCAGGGACTATCATCGCCGCCATAAAGTATGTGAGCTCCATTCTAAAACACCAAAAGTAACCATTTGCGGTCAGGAACAACGATTCTGTCAGCAGTGTAGCAGATTCCATTCTTTGGTGGAGTTTGATGATCGAAAACGAAGCTGTAGGAAGCGTCTCGATGGGCACAACCGGCGTCGAAGAAAGCCTCAACCAGCGACTATGACACTAAATGCAGGAAGATTTCTCTATGGCAACCAAGGTCCAAGATTCTTACCATTTGGTAATCAATTACTGTCTGCCAGCAATGATGTGAGCTCTTCTTGGATTGGAATGATCAAACCCGAGAGCAATGCCCCTCTTTGCAGCGGCAACTCACAGTTTGACTTTGGTGACAGAAGAAAAAGTATGTTGCCTGGGTCGTTGGCTTGTGATTACAAAGAAAAACAATTAGCAATCTCTTGCATCCCTATAGGATTGCTTCCCAAATCATCCGATGCTCGCCCATTTCTCGACGTTGAATCCAGCAACGGAGAGAATGTTCAGAAAGTGCTCGGAAACGGATCAGATCAGTTCTTCAACTCTGACTGTGCTCTCTCTCTTCTGTCAACACCAGTTGAGCCCGGGGAGATTAATCTAAGCTCCATGAGCCAATCCAACCTCATCACCCCAGCCCATTTCATCCACAGTGACGGTCTTGGCTTGGAGAGTGACCCTGTTAATTCTGGTTTGGTCTCGGACGGTAGCAGCCATGCCAACATCCGGTGCTACCCGACGTTCCAGGATGGTCTTGCTGGATCATCTGTAGATTTATTCAGGTATTGA 987 47.21 MYLRLRGIGNMGDGSMDDMKGTRVSLIESSASRLMKRSRAPGSGPQVPSCMVDGCSSDLSKCRDYHRRHKVCELHSKTPKVTICGQEQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPATMTLNAGRFLYGNQGPRFLPFGNQLLSASNDVSSSWIGMIKPESNAPLCSGNSQFDFGDRRKSMLPGSLACDYKEKQLAISCIPIGLLPKSSDARPFLDVESSNGENVQKVLGNGSDQFFNSDCALSLLSTPVEPGEINLSSMSQSNLITPAHFIHSDGLGLESDPVNSGLVSDGSSHANIRCYPTFQDGLAGSSVDLFRY 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 10690874 10692418 + CmoCh17G013760.1 Cmo17g01376 401759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g01376 328 ProSiteProfiles Zinc finger SBP-type profile. 47 124 IPR004333 GO:0003677
Cmo17g01376 328 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 3 315 IPR044817 GO:0003677
Cmo17g01376 328 Gene3D - 41 111 IPR036893 GO:0003677|GO:0005634
Cmo17g01376 328 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 3 315 - -
Cmo17g01376 328 Pfam SBP domain 50 123 IPR004333 GO:0003677
Cmo17g01376 328 SUPERFAMILY SBT domain 48 129 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00045 Cmo-Chr10:218946 Cmo17g01376 Cmo-Chr17:10690874 1.04E-49 dispersed
Cmo10g00304 Cmo-Chr10:1358159 Cmo17g01376 Cmo-Chr17:10690874 1.49E-40 dispersed
Cmo11g00026 Cmo-Chr11:113484 Cmo17g01376 Cmo-Chr17:10690874 3.84E-45 dispersed
Cmo11g01608 Cmo-Chr11:11516749 Cmo17g01376 Cmo-Chr17:10690874 3.55E-49 dispersed
Cmo13g00846 Cmo-Chr13:7802794 Cmo17g01376 Cmo-Chr17:10690874 1.40E-53 dispersed
Cmo14g00739 Cmo-Chr14:3774412 Cmo17g01376 Cmo-Chr17:10690874 6.77E-46 dispersed
Cmo17g01376 Cmo-Chr17:10690874 Cmo18g00226 Cmo-Chr18:1472453 6.16E-38 dispersed
Cmo17g01376 Cmo-Chr17:10690874 Cmo08g00173 Cmo-Chr8:996835 2.54E-166 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11455 PF03110 SBP 7.40E-29 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g01376 - - cpep:111787814 642.499