Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g01376 ATGTATTTGAGACTCAGGGGCATTGGTAATATGGGCGATGGTTCTATGGATGACATGAAAGGAACTAGAGTTTCTTTGATCGAGTCATCGGCTTCGAGATTAATGAAGAGGTCACGCGCCCCTGGAAGCGGTCCCCAAGTCCCTTCCTGTATGGTTGATGGTTGTAGCTCAGACCTTAGCAAATGCAGGGACTATCATCGCCGCCATAAAGTATGTGAGCTCCATTCTAAAACACCAAAAGTAACCATTTGCGGTCAGGAACAACGATTCTGTCAGCAGTGTAGCAGATTCCATTCTTTGGTGGAGTTTGATGATCGAAAACGAAGCTGTAGGAAGCGTCTCGATGGGCACAACCGGCGTCGAAGAAAGCCTCAACCAGCGACTATGACACTAAATGCAGGAAGATTTCTCTATGGCAACCAAGGTCCAAGATTCTTACCATTTGGTAATCAATTACTGTCTGCCAGCAATGATGTGAGCTCTTCTTGGATTGGAATGATCAAACCCGAGAGCAATGCCCCTCTTTGCAGCGGCAACTCACAGTTTGACTTTGGTGACAGAAGAAAAAGTATGTTGCCTGGGTCGTTGGCTTGTGATTACAAAGAAAAACAATTAGCAATCTCTTGCATCCCTATAGGATTGCTTCCCAAATCATCCGATGCTCGCCCATTTCTCGACGTTGAATCCAGCAACGGAGAGAATGTTCAGAAAGTGCTCGGAAACGGATCAGATCAGTTCTTCAACTCTGACTGTGCTCTCTCTCTTCTGTCAACACCAGTTGAGCCCGGGGAGATTAATCTAAGCTCCATGAGCCAATCCAACCTCATCACCCCAGCCCATTTCATCCACAGTGACGGTCTTGGCTTGGAGAGTGACCCTGTTAATTCTGGTTTGGTCTCGGACGGTAGCAGCCATGCCAACATCCGGTGCTACCCGACGTTCCAGGATGGTCTTGCTGGATCATCTGTAGATTTATTCAGGTATTGA 987 47.21 MYLRLRGIGNMGDGSMDDMKGTRVSLIESSASRLMKRSRAPGSGPQVPSCMVDGCSSDLSKCRDYHRRHKVCELHSKTPKVTICGQEQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPATMTLNAGRFLYGNQGPRFLPFGNQLLSASNDVSSSWIGMIKPESNAPLCSGNSQFDFGDRRKSMLPGSLACDYKEKQLAISCIPIGLLPKSSDARPFLDVESSNGENVQKVLGNGSDQFFNSDCALSLLSTPVEPGEINLSSMSQSNLITPAHFIHSDGLGLESDPVNSGLVSDGSSHANIRCYPTFQDGLAGSSVDLFRY 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 10690874 10692418 + CmoCh17G013760.1 Cmo17g01376 401759

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g01376 328 ProSiteProfiles Zinc finger SBP-type profile. 47 124 IPR004333 GO:0003677
Cmo17g01376 328 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 3 315 IPR044817 GO:0003677
Cmo17g01376 328 Gene3D - 41 111 IPR036893 GO:0003677|GO:0005634
Cmo17g01376 328 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 13A ISOFORM X1 3 315 - -
Cmo17g01376 328 Pfam SBP domain 50 123 IPR004333 GO:0003677
Cmo17g01376 328 SUPERFAMILY SBT domain 48 129 IPR036893 GO:0003677|GO:0005634
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g01376 - - - cpep:111787814 642.499
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00045 Cmo-Chr10:218946 Cmo17g01376 Cmo-Chr17:10690874 1.04E-49 dispersed
Cmo10g00304 Cmo-Chr10:1358159 Cmo17g01376 Cmo-Chr17:10690874 1.49E-40 dispersed
Cmo11g00026 Cmo-Chr11:113484 Cmo17g01376 Cmo-Chr17:10690874 3.84E-45 dispersed
Cmo11g01608 Cmo-Chr11:11516749 Cmo17g01376 Cmo-Chr17:10690874 3.55E-49 dispersed
Cmo13g00846 Cmo-Chr13:7802794 Cmo17g01376 Cmo-Chr17:10690874 1.40E-53 dispersed
Cmo14g00739 Cmo-Chr14:3774412 Cmo17g01376 Cmo-Chr17:10690874 6.77E-46 dispersed
Cmo17g01376 Cmo-Chr17:10690874 Cmo18g00226 Cmo-Chr18:1472453 6.16E-38 dispersed
Cmo17g01376 Cmo-Chr17:10690874 Cmo08g00173 Cmo-Chr8:996835 2.54E-166 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo14g00981 CST 181 1007 SBP-box Gene Family AT2G47070 53.4 6.7e-229 791.2
Cmo14g00981 CST 25 1007 SBP-box Gene Family AT3G60030 52.0 4.3e-262 901.7
Cmo17g01376 . 15 163 SBP-box Gene Family AT5G50570 54.6 1.6e-39 161.0
Cmo08g00173 . 28 166 SBP-box Gene Family AT5G50570 58.2 5.2e-38 156.0
Cmo11g01608 CST 66 165 SBP-box Gene Family AT5G50570 69.0 3.4e-37 153.3
Cmo14g00739 CST 55 169 SBP-box Gene Family AT5G50570 64.1 4.4e-37 152.9
Cmo14g00981 CST 181 1007 SBP-box Gene Family AT2G47070 53.4 6.7e-229 791.2
Cmo14g00981 CST 25 1007 SBP-box Gene Family AT3G60030 52.0 4.3e-262 901.7
Cmo17g01376 . 15 163 SBP-box Gene Family AT5G50570 54.6 1.6e-39 161.0
Cmo08g00173 . 28 166 SBP-box Gene Family AT5G50570 58.2 5.2e-38 156.0
Cmo11g01608 CST 66 165 SBP-box Gene Family AT5G50570 69.0 3.4e-37 153.3
Cmo14g00739 CST 55 169 SBP-box Gene Family AT5G50570 64.1 4.4e-37 152.9
Cmo17g01376 . 15 163 SBP-box Gene Family AT5G50670 54.6 1.6e-39 161.0
Cmo08g00173 . 28 166 SBP-box Gene Family AT5G50670 58.2 5.2e-38 156.0
Cmo11g01608 CST 66 165 SBP-box Gene Family AT5G50670 69.0 3.4e-37 153.3
Cmo14g00739 CST 55 169 SBP-box Gene Family AT5G50670 64.1 4.4e-37 152.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007281 0 3 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 2 1 1 1 1 1 5 1 2 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11455 PF03110 SBP 7.40E-29 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo17g01376 Cmo_Chr17 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0