Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g01377 ATGGGAAGAGGGAGAGTAGAGCTGAAGAGAATAGAAAACAAGATCAATAGGCAAGTCACCTTCGCTAAACGGAGAAATGGGGTTTTGAAGAAAGCTTATGAGCTCTCCGTTCTGTGCGATGCCGAAGTTGCTCTCATCATCTTCTCCAATAGAGGAAAGCTCTACGAGTTTTGCAGTAGTTCAAGCATGCTGAAAACATTAGAGAGATACCAGAAATGCAACTATGGAGCACCAGAGCCGAATGTGTCCACAAGAGAGGCCTTGGAAGTGAGCAGCCAGCAGGAGTATTTGAAGCTTAAAGCTCGCTACGAAGCTCTGCAACGATCCCAAAGGAACCTTTTGGGAGAAGACCTTGGCCCATTGAGTAGCAAAGAACTTGAATCCCTTGAAAGGCAACTTGATATGTCACTCAAGCACATAAGGTCAACAAGGACTCAGTACATGTTAGATCAACTCACCGATCTTCAACGTAAGGAGCATCTTCTTAACGACGCAAACAGGACTCTGAAACAAAGGTTAGTAGAAGGGTATCAAGTAAATGCTCTCCAATTGAACCAAAGTGGTGATGATATGATGTATGGAAGACACCAAGCTCACCCTCCACCCGATGCCTTCTTCCATCTTTTAGATGCCGAACCCACCTTACAAATTGGGTATCACCCAGATCCGCTAACAGTGGTCACCGCTGGGCCAAGCATGAATAATTTCCTCCCAGGGTGGTTGCCTTGA 729 45.82 MGRGRVELKRIENKINRQVTFAKRRNGVLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSTREALEVSSQQEYLKLKARYEALQRSQRNLLGEDLGPLSSKELESLERQLDMSLKHIRSTRTQYMLDQLTDLQRKEHLLNDANRTLKQRLVEGYQVNALQLNQSGDDMMYGRHQAHPPPDAFFHLLDAEPTLQIGYHPDPLTVVTAGPSMNNFLPGWLP 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 10695432 10698380 + CmoCh17G013770.1 Cmo17g01377 401760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g01377 242 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cmo17g01377 242 Pfam K-box region 91 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cmo17g01377 242 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 228 - -
Cmo17g01377 242 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Cmo17g01377 242 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cmo17g01377 242 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cmo17g01377 242 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cmo17g01377 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cmo17g01377 242 ProSiteProfiles K-box domain profile. 89 185 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cmo17g01377 242 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cmo17g01377 242 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
Cmo17g01377 242 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cmo17g01377 242 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL9 HOMOLOG 1 228 - -
Cmo17g01377 242 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01352 Cmo-Chr3:9999265 Cmo17g01377 Cmo-Chr17:10695432 2.92E-50 dispersed
Cmo08g00911 Cmo-Chr8:5934466 Cmo17g01377 Cmo-Chr17:10695432 1.88E-73 dispersed
Cmo13g01103 Cmo-Chr13:9050079 Cmo17g01377 Cmo-Chr17:10695432 1.26E-58 dispersed
Cmo14g01181 Cmo-Chr14:9787590 Cmo17g01377 Cmo-Chr17:10695432 1.50E-86 dispersed
Cmo17g01377 Cmo-Chr17:10695432 Cmo18g00020 Cmo-Chr18:82092 2.28E-77 dispersed
Cmo17g01377 Cmo-Chr17:10695432 Cmo17g01378 Cmo-Chr17:10700561 2.03E-25 tandem
Cmo17g01377 Cmo-Chr17:10695432 Cmo08g00175 Cmo-Chr8:1016886 1.37E-172 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11456 PF01486 K-box 2.00E-26 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g01377 - - csv:101216798 457.988