Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo17g01377 | ATGGGAAGAGGGAGAGTAGAGCTGAAGAGAATAGAAAACAAGATCAATAGGCAAGTCACCTTCGCTAAACGGAGAAATGGGGTTTTGAAGAAAGCTTATGAGCTCTCCGTTCTGTGCGATGCCGAAGTTGCTCTCATCATCTTCTCCAATAGAGGAAAGCTCTACGAGTTTTGCAGTAGTTCAAGCATGCTGAAAACATTAGAGAGATACCAGAAATGCAACTATGGAGCACCAGAGCCGAATGTGTCCACAAGAGAGGCCTTGGAAGTGAGCAGCCAGCAGGAGTATTTGAAGCTTAAAGCTCGCTACGAAGCTCTGCAACGATCCCAAAGGAACCTTTTGGGAGAAGACCTTGGCCCATTGAGTAGCAAAGAACTTGAATCCCTTGAAAGGCAACTTGATATGTCACTCAAGCACATAAGGTCAACAAGGACTCAGTACATGTTAGATCAACTCACCGATCTTCAACGTAAGGAGCATCTTCTTAACGACGCAAACAGGACTCTGAAACAAAGGTTAGTAGAAGGGTATCAAGTAAATGCTCTCCAATTGAACCAAAGTGGTGATGATATGATGTATGGAAGACACCAAGCTCACCCTCCACCCGATGCCTTCTTCCATCTTTTAGATGCCGAACCCACCTTACAAATTGGGTATCACCCAGATCCGCTAACAGTGGTCACCGCTGGGCCAAGCATGAATAATTTCCTCCCAGGGTGGTTGCCTTGA | 729 | 45.82 | MGRGRVELKRIENKINRQVTFAKRRNGVLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSTREALEVSSQQEYLKLKARYEALQRSQRNLLGEDLGPLSSKELESLERQLDMSLKHIRSTRTQYMLDQLTDLQRKEHLLNDANRTLKQRLVEGYQVNALQLNQSGDDMMYGRHQAHPPPDAFFHLLDAEPTLQIGYHPDPLTVVTAGPSMNNFLPGWLP | 242 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 10695432 | 10698380 | + | CmoCh17G013770.1 | Cmo17g01377 | 401760 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo17g01377 | 242 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Cmo17g01377 | 242 | Pfam | K-box region | 91 | 173 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cmo17g01377 | 242 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 228 | - | - | |
Cmo17g01377 | 242 | SUPERFAMILY | SRF-like | 2 | 76 | IPR036879 | GO:0003677|GO:0046983 | |
Cmo17g01377 | 242 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Cmo17g01377 | 242 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Cmo17g01377 | 242 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Cmo17g01377 | 242 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Cmo17g01377 | 242 | ProSiteProfiles | K-box domain profile. | 89 | 185 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cmo17g01377 | 242 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Cmo17g01377 | 242 | Gene3D | - | 13 | 80 | IPR036879 | GO:0003677|GO:0046983 | |
Cmo17g01377 | 242 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Cmo17g01377 | 242 | PANTHER | AGAMOUS-LIKE MADS-BOX PROTEIN AGL9 HOMOLOG | 1 | 228 | - | - | |
Cmo17g01377 | 242 | CDD | MADS_MEF2_like | 2 | 76 | IPR033896 | GO:0000977|GO:0045944 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo03g01352 | Cmo-Chr3:9999265 | Cmo17g01377 | Cmo-Chr17:10695432 | 2.92E-50 | dispersed | |
Cmo08g00911 | Cmo-Chr8:5934466 | Cmo17g01377 | Cmo-Chr17:10695432 | 1.88E-73 | dispersed | |
Cmo13g01103 | Cmo-Chr13:9050079 | Cmo17g01377 | Cmo-Chr17:10695432 | 1.26E-58 | dispersed | |
Cmo14g01181 | Cmo-Chr14:9787590 | Cmo17g01377 | Cmo-Chr17:10695432 | 1.50E-86 | dispersed | |
Cmo17g01377 | Cmo-Chr17:10695432 | Cmo18g00020 | Cmo-Chr18:82092 | 2.28E-77 | dispersed | |
Cmo17g01377 | Cmo-Chr17:10695432 | Cmo17g01378 | Cmo-Chr17:10700561 | 2.03E-25 | tandem | |
Cmo17g01377 | Cmo-Chr17:10695432 | Cmo08g00175 | Cmo-Chr8:1016886 | 1.37E-172 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11456 | PF01486 | K-box | 2.00E-26 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo17g01377 | - | - | csv:101216798 | 457.988 |