Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo17g01382 | TATGATGTTAGTGACCTTTATCGAGAAGCACAAACACGTTGGCTGAAGCCTCCTGAGGTGCTCTTTATCTTACAGAATCATGAGAAATATCAGCTGACTGAGGAGGCCCCTAAACAGCCAACTAGTGGTTCCTTGTTTCTTTTTAACAAGAGAGTACTCCGTTTCTTCCGTAGAGATGGTCATAACTGGAGGAAAAAAAGGGACGGAAGAACTGTAGGAGAAGCACACGAACGACTTAAGGTTGGAAATGCTGAAGCGTTAAATTGCTATTATGCACATGGAGAGCACAATCCCAATTTCCAGAGACGTAGCTATTGGATGCTGGATCAG | 330 | 43.64 | YDVSDLYREAQTRWLKPPEVLFILQNHEKYQLTEEAPKQPTSGSLFLFNKRVLRFFRRDGHNWRKKRDGRTVGEAHERLKVGNAEALNCYYAHGEHNPNFQRRSYWMLDQ | 110 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 17 | 10719368 | 10720622 | + | CmoCh17G013820.1 | Cmo17g01382 | 401765 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo17g01382 | 110 | Pfam | CG-1 domain | 9 | 110 | IPR005559 | GO:0003677 | |
| Cmo17g01382 | 110 | SMART | CG_1_2 | 6 | 110 | IPR005559 | GO:0003677 | |
| Cmo17g01382 | 110 | PANTHER | CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA | 1 | 110 | - | - | |
| Cmo17g01382 | 110 | ProSiteProfiles | CG-1 DNA-binding domain profile. | 3 | 110 | IPR005559 | GO:0003677 | |
| Cmo17g01382 | 110 | PANTHER | CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 4 | 1 | 110 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo17g01382 | Cmo-Chr17:10719368 | Cmo19g00274 | Cmo-Chr19:2003464 | 3.31E-47 | dispersed | |
| Cmo17g01382 | Cmo-Chr17:10719368 | Cmo08g00180 | Cmo-Chr8:1057956 | 3.57E-62 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo17g01382 | K21596 | - | csv:101222798 | 232.646 |