Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g01382 TATGATGTTAGTGACCTTTATCGAGAAGCACAAACACGTTGGCTGAAGCCTCCTGAGGTGCTCTTTATCTTACAGAATCATGAGAAATATCAGCTGACTGAGGAGGCCCCTAAACAGCCAACTAGTGGTTCCTTGTTTCTTTTTAACAAGAGAGTACTCCGTTTCTTCCGTAGAGATGGTCATAACTGGAGGAAAAAAAGGGACGGAAGAACTGTAGGAGAAGCACACGAACGACTTAAGGTTGGAAATGCTGAAGCGTTAAATTGCTATTATGCACATGGAGAGCACAATCCCAATTTCCAGAGACGTAGCTATTGGATGCTGGATCAG 330 43.64 YDVSDLYREAQTRWLKPPEVLFILQNHEKYQLTEEAPKQPTSGSLFLFNKRVLRFFRRDGHNWRKKRDGRTVGEAHERLKVGNAEALNCYYAHGEHNPNFQRRSYWMLDQ 110
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 10719368 10720622 + CmoCh17G013820.1 Cmo17g01382 401765

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g01382 110 Pfam CG-1 domain 9 110 IPR005559 GO:0003677
Cmo17g01382 110 SMART CG_1_2 6 110 IPR005559 GO:0003677
Cmo17g01382 110 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 110 - -
Cmo17g01382 110 ProSiteProfiles CG-1 DNA-binding domain profile. 3 110 IPR005559 GO:0003677
Cmo17g01382 110 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 4 1 110 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g01382 K21596 CAMTA; calmodulin-binding transcription activator - csv:101222798 232.646
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo17g01382 Cmo-Chr17:10719368 Cmo19g00274 Cmo-Chr19:2003464 3.31E-47 dispersed
Cmo17g01382 Cmo-Chr17:10719368 Cmo08g00180 Cmo-Chr8:1057956 3.57E-62 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo19g00274 . 1 1089 CAMTA Transcription Factor Family AT5G64220 52.8 9.9e-271 930.6
Cmo11g01484 . 1 1090 CAMTA Transcription Factor Family AT5G64220 53.1 9.2e-269 924.1
Cmo17g01382 . 2 110 CAMTA Transcription Factor Family AT5G64220 63.3 2.1e-39 162.2
Cmo08g00180 . 5 920 CAMTA Transcription Factor Family AT1G67310 50.8 2.1e-241 833.2
Cmo17g01384 . 27 577 CAMTA Transcription Factor Family AT1G67310 58.3 2.8e-169 593.6
Cmo17g01382 . 1 109 CAMTA Transcription Factor Family AT1G67310 76.1 1.7e-46 185.7
Cmo17g00349 CCT,CST 34 902 CAMTA Transcription Factor Family AT3G16940 54.6 4.2e-261 898.3
Cmo08g01236 CCT,CST 34 907 CAMTA Transcription Factor Family AT3G16940 55.0 8.8e-259 890.6
Cmo17g00349 CCT,CST 11 626 CAMTA Transcription Factor Family AT4G16150 52.8 2.8e-192 669.8
Cmo08g01236 CCT,CST 11 631 CAMTA Transcription Factor Family AT4G16150 52.4 4.4e-190 662.5
Cmo19g00274 . 1 1089 CAMTA Transcription Factor Family AT5G64220 52.8 9.9e-271 930.6
Cmo11g01484 . 1 1090 CAMTA Transcription Factor Family AT5G64220 53.1 9.2e-269 924.1
Cmo17g01382 . 2 110 CAMTA Transcription Factor Family AT5G64220 63.3 2.1e-39 162.2
Cmo08g00180 . 5 920 CAMTA Transcription Factor Family AT1G67310 50.8 2.1e-241 833.2
Cmo17g01384 . 27 577 CAMTA Transcription Factor Family AT1G67310 58.3 2.8e-169 593.6
Cmo17g01382 . 1 109 CAMTA Transcription Factor Family AT1G67310 76.1 1.7e-46 185.7
Cmo17g00349 CCT,CST 11 626 CAMTA Transcription Factor Family AT4G16150 52.8 2.8e-192 669.8
Cmo08g01236 CCT,CST 11 631 CAMTA Transcription Factor Family AT4G16150 52.4 4.4e-190 662.5
Cmo17g00349 CCT,CST 34 902 CAMTA Transcription Factor Family AT3G16940 54.6 4.2e-261 898.3
Cmo08g01236 CCT,CST 34 907 CAMTA Transcription Factor Family AT3G16940 55.0 8.8e-259 890.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015537 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 3 1 0 0 0 0 0 7
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo17g01382 Cmo_Chr17 FPKM 0.824581 1.891249 0.445594 0.910146 0.829939 0.507065 0.0 0.892487 0.880583 0.919481