Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g01384 ATGCAGGCTCTCATAGAAGTAGTAGCCTCTGTTATTCTCATGAAGATTCAAATATTAAGGTCACAAATTCTCTCTATCCAGGTCATCATTATTGGATCTTTTCTTTGTGATCCTTCAAAAGCACCATGGGCTTGTATGTTTGGAGATATCGAAGTTCCTCTTCAGGTTGTTCAGAATGGGGTCCTTTGTTTTGAAGCGCCTCCACACCTTCCTGGGAAGGTTGCTTTCTTCATTACATCTGGCAATCGGGAACCCTGCAGTGAAGTCAGAGAGTTCGAATATAAAATGAATGTTTGCAGCCATTGCCAATCACATTCAAGTGGAGCTACGAAGAGCCCAGAGGAGCTGTTATTACTTGTCAGGCTTGTGCAATTGCTGCTCTCTGACTCATTAATGCAGAAATTTGACGAGGTAGATTCTGAAGTTAGGAGCAATAATTTGAAAGCTGGCGACGATCAATGGAGTTCTTTGATAGAGGCTCTTCTAGTTGGTAGTGAAACTCCTTCTGGTACCATGGATTGGCTACTTCAAGAGCTACTAAAAGACAAGTTGTATCTCTGGCTTTCTTCGCAGAAGAAAGATAGACACGATCTGGCAGGCTGTTCCTTGTCTAAGAAAGAACAAGGTGTTATACACATGATTTCCGGTTTGGGCTATGTGTGGGCACTAAACCCGATTCTCAGTTGTGGAGTAAATATAAATTTCCGTGACATTAATGGATGGACTGCTCTACATTGGGCAGCACGATTTGGAAGGGAAAAAATGGTCGCTGCATTAATAGCCTCAGGAGCATCAGCTGGCGCTGTGACTGATCCTAGTTCACAAGACCGAGATGGTAAAACTGCAGCGTCTATTGCAGACATCCATGGACACAAGGGACTTGCTGGTTATTTATCGGAGGTTGCCCTTACTAGTCATCTTTCATCCCTCACATTTGAAGAAGGTGAACTTTCCAATGGCTCTGCGGAGATAGAAGCAGAAATAACTGTAAATTGCATTTCAAAGGGGAACCTCTCTTCAGCTGAGGACTGTATCCCTCTGAAAAATACGTTAGCTGCAGTCAGGAATGCTGCTCAGGCAGCGGCCCGTATTCAATCTGCTTTCCGTGCTCATTCTTTCAGAAAGCGACAGCAGAAGGAGGCAACTTTTGCAGCTTGTATAGATGAGTATGGAATTGATCCAAATGACATACAGGGGCTCTTAGCTATGTCAAAATTGAACTTTTCTAATCGGCGTGATTACAATGCTGCTGCATTATCTATACAAAAAAAATATAGAGGTTGGAAAGGTCGTAGAGAGTTTTTATCAATGCGTCAGAAAGTCGTGAAGATACAGGTACTATATTATCTCCATAACATTTATGTACATTCACTCACCAATAAGTTACTAAACACGCTAATCAACTTATTCTCAAAGGAAGCACATGTGAGGGGGTATCAAGCTAGGAAGCATCACAAGATAATTTGTTGGGCTGTTGGGATTCTGGATAAAGCTGTATTACGTTGGAGAAGGAAAGGGGTTGGGTTGAGAGGGTTTCGTAGCGAGATAGGGTCCATTGATGAAAGTGAAGATGGCGATATTATAAAGGTGTTCCGCAAACAAAAAGTGGAAGGAACTATTGATGAGGCCGTTTCACGAGTGCTATCCATGGTTGACTCTCCAGATGCTTGTCAGCAATATCATCGTATGCTTGAAGGATTTCGAGAAGCCAAGGCAAAACTAGATGGCACCGGTAATGAATCCGCAGAATCGACTTGTCTCAGCGATGAACACAGACCTGAAGGAATAGGAATTGTCTGCAAGAAATGTACATGA 1815 42.75 MQALIEVVASVILMKIQILRSQILSIQVIIIGSFLCDPSKAPWACMFGDIEVPLQVVQNGVLCFEAPPHLPGKVAFFITSGNREPCSEVREFEYKMNVCSHCQSHSSGATKSPEELLLLVRLVQLLLSDSLMQKFDEVDSEVRSNNLKAGDDQWSSLIEALLVGSETPSGTMDWLLQELLKDKLYLWLSSQKKDRHDLAGCSLSKKEQGVIHMISGLGYVWALNPILSCGVNINFRDINGWTALHWAARFGREKMVAALIASGASAGAVTDPSSQDRDGKTAASIADIHGHKGLAGYLSEVALTSHLSSLTFEEGELSNGSAEIEAEITVNCISKGNLSSAEDCIPLKNTLAAVRNAAQAAARIQSAFRAHSFRKRQQKEATFAACIDEYGIDPNDIQGLLAMSKLNFSNRRDYNAAALSIQKKYRGWKGRREFLSMRQKVVKIQVLYYLHNIYVHSLTNKLLNTLINLFSKEAHVRGYQARKHHKIICWAVGILDKAVLRWRRKGVGLRGFRSEIGSIDESEDGDIIKVFRKQKVEGTIDEAVSRVLSMVDSPDACQQYHRMLEGFREAKAKLDGTGNESAESTCLSDEHRPEGIGIVCKKCT 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 10730213 10734340 + CmoCh17G013840.1 Cmo17g01384 401767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g01384 604 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 4 473 585 - -
Cmo17g01384 604 SMART ANK_2a 239 268 IPR002110 GO:0005515
Cmo17g01384 604 ProSiteProfiles IQ motif profile. 357 385 IPR000048 GO:0005515
Cmo17g01384 604 ProSiteProfiles IQ motif profile. 414 443 IPR000048 GO:0005515
Cmo17g01384 604 ProSiteProfiles Ankyrin repeat profile. 239 271 IPR002110 GO:0005515
Cmo17g01384 604 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 473 585 - -
Cmo17g01384 604 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 27 446 - -
Cmo17g01384 604 Gene3D - 177 308 IPR036770 -
Cmo17g01384 604 SUPERFAMILY E set domains 27 94 IPR014756 -
Cmo17g01384 604 Gene3D - 413 450 - -
Cmo17g01384 604 Pfam Ankyrin repeats (3 copies) 221 298 IPR002110 GO:0005515
Cmo17g01384 604 Gene3D Immunoglobulins 24 98 IPR013783 -
Cmo17g01384 604 Pfam IQ calmodulin-binding motif 416 434 IPR000048 GO:0005515
Cmo17g01384 604 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 4 27 446 - -
Cmo17g01384 604 SUPERFAMILY Ankyrin repeat 209 300 IPR036770 -
Cmo17g01384 604 SMART iq_5 413 435 IPR000048 GO:0005515
Cmo17g01384 604 SMART iq_5 356 378 IPR000048 GO:0005515
Cmo17g01384 604 ProSiteProfiles Ankyrin repeat region circular profile. 239 265 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo17g01384 Cmo-Chr17:10730213 Cmo19g00274 Cmo-Chr19:2003464 1.16E-104 dispersed
Cmo17g01384 Cmo-Chr17:10730213 Cmo08g00180 Cmo-Chr8:1057956 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g01384 K21596 - csv:101222798 902.508