Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g01384 ATGCAGGCTCTCATAGAAGTAGTAGCCTCTGTTATTCTCATGAAGATTCAAATATTAAGGTCACAAATTCTCTCTATCCAGGTCATCATTATTGGATCTTTTCTTTGTGATCCTTCAAAAGCACCATGGGCTTGTATGTTTGGAGATATCGAAGTTCCTCTTCAGGTTGTTCAGAATGGGGTCCTTTGTTTTGAAGCGCCTCCACACCTTCCTGGGAAGGTTGCTTTCTTCATTACATCTGGCAATCGGGAACCCTGCAGTGAAGTCAGAGAGTTCGAATATAAAATGAATGTTTGCAGCCATTGCCAATCACATTCAAGTGGAGCTACGAAGAGCCCAGAGGAGCTGTTATTACTTGTCAGGCTTGTGCAATTGCTGCTCTCTGACTCATTAATGCAGAAATTTGACGAGGTAGATTCTGAAGTTAGGAGCAATAATTTGAAAGCTGGCGACGATCAATGGAGTTCTTTGATAGAGGCTCTTCTAGTTGGTAGTGAAACTCCTTCTGGTACCATGGATTGGCTACTTCAAGAGCTACTAAAAGACAAGTTGTATCTCTGGCTTTCTTCGCAGAAGAAAGATAGACACGATCTGGCAGGCTGTTCCTTGTCTAAGAAAGAACAAGGTGTTATACACATGATTTCCGGTTTGGGCTATGTGTGGGCACTAAACCCGATTCTCAGTTGTGGAGTAAATATAAATTTCCGTGACATTAATGGATGGACTGCTCTACATTGGGCAGCACGATTTGGAAGGGAAAAAATGGTCGCTGCATTAATAGCCTCAGGAGCATCAGCTGGCGCTGTGACTGATCCTAGTTCACAAGACCGAGATGGTAAAACTGCAGCGTCTATTGCAGACATCCATGGACACAAGGGACTTGCTGGTTATTTATCGGAGGTTGCCCTTACTAGTCATCTTTCATCCCTCACATTTGAAGAAGGTGAACTTTCCAATGGCTCTGCGGAGATAGAAGCAGAAATAACTGTAAATTGCATTTCAAAGGGGAACCTCTCTTCAGCTGAGGACTGTATCCCTCTGAAAAATACGTTAGCTGCAGTCAGGAATGCTGCTCAGGCAGCGGCCCGTATTCAATCTGCTTTCCGTGCTCATTCTTTCAGAAAGCGACAGCAGAAGGAGGCAACTTTTGCAGCTTGTATAGATGAGTATGGAATTGATCCAAATGACATACAGGGGCTCTTAGCTATGTCAAAATTGAACTTTTCTAATCGGCGTGATTACAATGCTGCTGCATTATCTATACAAAAAAAATATAGAGGTTGGAAAGGTCGTAGAGAGTTTTTATCAATGCGTCAGAAAGTCGTGAAGATACAGGTACTATATTATCTCCATAACATTTATGTACATTCACTCACCAATAAGTTACTAAACACGCTAATCAACTTATTCTCAAAGGAAGCACATGTGAGGGGGTATCAAGCTAGGAAGCATCACAAGATAATTTGTTGGGCTGTTGGGATTCTGGATAAAGCTGTATTACGTTGGAGAAGGAAAGGGGTTGGGTTGAGAGGGTTTCGTAGCGAGATAGGGTCCATTGATGAAAGTGAAGATGGCGATATTATAAAGGTGTTCCGCAAACAAAAAGTGGAAGGAACTATTGATGAGGCCGTTTCACGAGTGCTATCCATGGTTGACTCTCCAGATGCTTGTCAGCAATATCATCGTATGCTTGAAGGATTTCGAGAAGCCAAGGCAAAACTAGATGGCACCGGTAATGAATCCGCAGAATCGACTTGTCTCAGCGATGAACACAGACCTGAAGGAATAGGAATTGTCTGCAAGAAATGTACATGA 1815 42.75 MQALIEVVASVILMKIQILRSQILSIQVIIIGSFLCDPSKAPWACMFGDIEVPLQVVQNGVLCFEAPPHLPGKVAFFITSGNREPCSEVREFEYKMNVCSHCQSHSSGATKSPEELLLLVRLVQLLLSDSLMQKFDEVDSEVRSNNLKAGDDQWSSLIEALLVGSETPSGTMDWLLQELLKDKLYLWLSSQKKDRHDLAGCSLSKKEQGVIHMISGLGYVWALNPILSCGVNINFRDINGWTALHWAARFGREKMVAALIASGASAGAVTDPSSQDRDGKTAASIADIHGHKGLAGYLSEVALTSHLSSLTFEEGELSNGSAEIEAEITVNCISKGNLSSAEDCIPLKNTLAAVRNAAQAAARIQSAFRAHSFRKRQQKEATFAACIDEYGIDPNDIQGLLAMSKLNFSNRRDYNAAALSIQKKYRGWKGRREFLSMRQKVVKIQVLYYLHNIYVHSLTNKLLNTLINLFSKEAHVRGYQARKHHKIICWAVGILDKAVLRWRRKGVGLRGFRSEIGSIDESEDGDIIKVFRKQKVEGTIDEAVSRVLSMVDSPDACQQYHRMLEGFREAKAKLDGTGNESAESTCLSDEHRPEGIGIVCKKCT 604
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 10730213 10734340 + CmoCh17G013840.1 Cmo17g01384 401767

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g01384 604 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 4 473 585 - -
Cmo17g01384 604 SMART ANK_2a 239 268 IPR002110 GO:0005515
Cmo17g01384 604 ProSiteProfiles IQ motif profile. 357 385 IPR000048 GO:0005515
Cmo17g01384 604 ProSiteProfiles IQ motif profile. 414 443 IPR000048 GO:0005515
Cmo17g01384 604 ProSiteProfiles Ankyrin repeat profile. 239 271 IPR002110 GO:0005515
Cmo17g01384 604 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 473 585 - -
Cmo17g01384 604 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 27 446 - -
Cmo17g01384 604 Gene3D - 177 308 IPR036770 -
Cmo17g01384 604 SUPERFAMILY E set domains 27 94 IPR014756 -
Cmo17g01384 604 Gene3D - 413 450 - -
Cmo17g01384 604 Pfam Ankyrin repeats (3 copies) 221 298 IPR002110 GO:0005515
Cmo17g01384 604 Gene3D Immunoglobulins 24 98 IPR013783 -
Cmo17g01384 604 Pfam IQ calmodulin-binding motif 416 434 IPR000048 GO:0005515
Cmo17g01384 604 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 4 27 446 - -
Cmo17g01384 604 SUPERFAMILY Ankyrin repeat 209 300 IPR036770 -
Cmo17g01384 604 SMART iq_5 413 435 IPR000048 GO:0005515
Cmo17g01384 604 SMART iq_5 356 378 IPR000048 GO:0005515
Cmo17g01384 604 ProSiteProfiles Ankyrin repeat region circular profile. 239 265 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g01384 K21596 CAMTA; calmodulin-binding transcription activator - csv:101222798 902.508
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo17g01384 Cmo-Chr17:10730213 Cmo19g00274 Cmo-Chr19:2003464 1.16E-104 dispersed
Cmo17g01384 Cmo-Chr17:10730213 Cmo08g00180 Cmo-Chr8:1057956 0 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo19g00274 . 1 1089 CAMTA Transcription Factor Family AT5G64220 52.8 9.9e-271 930.6
Cmo11g01484 . 1 1090 CAMTA Transcription Factor Family AT5G64220 53.1 9.2e-269 924.1
Cmo17g01382 . 2 110 CAMTA Transcription Factor Family AT5G64220 63.3 2.1e-39 162.2
Cmo08g00180 . 5 920 CAMTA Transcription Factor Family AT1G67310 50.8 2.1e-241 833.2
Cmo17g01384 . 27 577 CAMTA Transcription Factor Family AT1G67310 58.3 2.8e-169 593.6
Cmo17g01382 . 1 109 CAMTA Transcription Factor Family AT1G67310 76.1 1.7e-46 185.7
Cmo17g00349 CCT,CST 34 902 CAMTA Transcription Factor Family AT3G16940 54.6 4.2e-261 898.3
Cmo08g01236 CCT,CST 34 907 CAMTA Transcription Factor Family AT3G16940 55.0 8.8e-259 890.6
Cmo17g00349 CCT,CST 11 626 CAMTA Transcription Factor Family AT4G16150 52.8 2.8e-192 669.8
Cmo08g01236 CCT,CST 11 631 CAMTA Transcription Factor Family AT4G16150 52.4 4.4e-190 662.5
Cmo19g00274 . 1 1089 CAMTA Transcription Factor Family AT5G64220 52.8 9.9e-271 930.6
Cmo11g01484 . 1 1090 CAMTA Transcription Factor Family AT5G64220 53.1 9.2e-269 924.1
Cmo17g01382 . 2 110 CAMTA Transcription Factor Family AT5G64220 63.3 2.1e-39 162.2
Cmo08g00180 . 5 920 CAMTA Transcription Factor Family AT1G67310 50.8 2.1e-241 833.2
Cmo17g01384 . 27 577 CAMTA Transcription Factor Family AT1G67310 58.3 2.8e-169 593.6
Cmo17g01382 . 1 109 CAMTA Transcription Factor Family AT1G67310 76.1 1.7e-46 185.7
Cmo17g00349 CCT,CST 11 626 CAMTA Transcription Factor Family AT4G16150 52.8 2.8e-192 669.8
Cmo08g01236 CCT,CST 11 631 CAMTA Transcription Factor Family AT4G16150 52.4 4.4e-190 662.5
Cmo17g00349 CCT,CST 34 902 CAMTA Transcription Factor Family AT3G16940 54.6 4.2e-261 898.3
Cmo08g01236 CCT,CST 34 907 CAMTA Transcription Factor Family AT3G16940 55.0 8.8e-259 890.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004085 2 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo17g01384 Cmo_Chr17 FPKM 0.604625 0.646297 0.397951 0.487776 0.841701 0.926861 0.784175 1.334285 1.203908 1.268464