Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g01385 ATGAACTGGTTCATTAATGGTGGAGGTATGGAAGGTAAGACTGGTTTGCTTGGTGGGGGTGGGAAGATATGGCTCCAATTGTGGGAGAAGGTCATTGGGAACTGTTTCAAGATGCATCACCAGTACTACCAGTATATTGGATCCAAGAAAGTGAGAAAAACATGGTGGAGGAGGGTTTTGGTGGCCTGGGTTCTTAGCTCTGCTCTTGCTTCTTTATGGATCTTCCACTACATGAGCTCCCAAGCTACAGAAAAGAGGAAAGAGGCCTTGGGAAGCATGTGTGATGAGAGGGCTAGGATGCTTCAAGACCAGTTTAATGTCAGCATGAATCATATCCAGGCAATGTCTATCCTCATCTCCACCTTCCATCATGGCAAGAACGTATCTGCTATAGATCAGGTACAAATTGGTGTGGCGTATGCAGTAAGGGTGCTTCATTCTGAAAGAGAACATTTTGAGAAGCAACAGGGCTGGACAATTAAAAGGATGGACAAAATCGAACAAAGCCCGGTTCACGAAGATGACTATGCTCCAGAAGACCTGGAGCCATCACCCACCCAAGACGAATATGCTCCTGTAATCTTCGCACAGGATACAATTTCTCATGTCGTTTCTCTCGATATGCTGTCGGGAGTGGAAGACCGTAAGAATGTAATTCGTGCTAGAGCGTCAGGAAAGGGAGTCTTAACTGCTCCATTCAGGTTAATCAAAACAAATCGTCTAGGCGTCATACTTACATTTGCGGTCTACAAGAGAGATCTTCCCTCAAATGCCACTCCAAATGAGAGGATTCAAGCTACAGATGGGTATCTTGGGGGAGTTTTTGATATCGAGTCGCTGGTGGAGAAGTTACTTCAACAGCTTGCAAGCAACCAAACCATCTTAGTTAATGTTTATGATACCACTAACCAATCACATCCGATCAGTATGTATGGTGGAGATGTATCAGAAGATGGGTTGCAGCATGTTAGTCCCCTCAACTTTGGGGATCCAGATAGGAAGCATGAGATGCGATGCAGATTCAAACAAAAACAAGCTTGGCCATGGTTAGCAATGACAACTTCAATTGGCATACTCATTATTGCATTGCTTTTGGGGTATATATTCCATGCAACCTTGAACCGAATTGCTAAAGTGGAGGATGATTATCACGAGATGATGGAACTCAAGAAACGGGCAGAAGATGCTGATGTTGCCAAATCCCAGTTTCTTGCAACTGTTTCCCATGAGATCAGAACCCCAATGAATGGTGTTCTAGGAATGTTGCATTTGCTAATGGACACAGACTTGGATGTGACTCAACAAGATTATGTTAAAACTGCACAAGATAGTGGAAAAGCTTTGGTATCATTGATAAACGAGGTTTTGGATCAGGCAAAAATTGAATCTGGAAAGCTTGAGCTTGAAGCAATACCATTTAATCTCCCAGCAATTTTGGATGATATTTTATCGCTCTTTTCTGGGAAATCTCAAGAAAAAGGACTGGAGCTGGCAGTTTACATCTCAGATAGTGTTCCTGAGATGCTTATTGGTGATCCTGGAAGGTCTACCGATGTTGTGAATTCTGAGAAAGGACACATCTTTGTCACTGTTAATCTCGTCGAGGAGGTTATTGAATCGATTGATCTCGAGATCGAGTCATCAACAAATAGCACCTTGAGTGGCTATCCTATTGCCAATAGACGTCTCAGCTGGGCAGGATTTCAAACGTTCAGTGAAGAGGGACCTGCTGCTTGTCATTTCATGCCATCTCCACCAGAGCTTATTAACCTCATGGTATCTGTGGAAGATACGGGCGTTGGTATTCCTCTGGAAGCCCAATCATGCGTTTTCACTCCCTTCATGCAGGTTCGACCATCCATCTCTAGAACGCATGGGGGAACGGGTATTGGGCTGAGTATTAGCAAATGTTTGGTTGGCCTCATGAAGGGGGAGATTGGTTTTGTGAGTGTACCTAAGATTGGCTCTACCTTCACATTCACGGCGGTATTCACAAAATGCTCTTCCAATTCAAGTGAATATAACAAAACCCAACAAATTAAGAACATTTCCATCCCAACATCCTCTGAATTTAAGGGTATGAGGGCACTAATTGTGGACCATCGACCTATTCGGGCCAAAGTATCAAGATATCATATTCAACGCCTTGGAATAAATGTTGAAGTCTTATCTGACTTGAATCAATGTCTGTGTTCCTCGACTATTAGTGGTTCAACTATCAATATGATTTTTGTTGAGCAAGATCTTTGGGATAAGGATACGAGCACATCTGATCTCTTTATCAAGAACTTGAGAAATTCTTATGGGGTTCCTCCCAAACTATTTCTTCTTACTACCTCCATTAGTTCTTCAAAAGCTAGCACTATAGTTTCTGATGTATTCACTCCCACAGTCATCTTAAAGCCCTTGAGGTCAGGCATGCTCGCTGCCTCTCTTCACAGAGTCATGGGTGTAGGGATCAAGGGTAATCCTCGCAATGGAGAGCTTCCTGTACTCTCACTCCGTAATTTACTTCTTGGTCGAAAAATTCTGGTAATAGATGACAATAAGGTAAATCGTATTGTCGCTGCTGGTGCTCTACAGCGGTATGGAGCGGATGTCGTATGTGAAAACAGTGGAAGAGAAGCAATCCGACTGCTTACGCCACCCCACCATTTTGATGCATGCTTCATGGATATTCAGATGCCAGAAATGGACGGCTTTGAAGCTACAAGAAGAATTCGGGAAATCGAACTTCAAATAAAAAATGGTATCCAAGCTGGAGAACTATCAATAGAAGCATACGAAAATAAATGTGATTGGGGTGTACCCATCTTGGCCATGACTGCAGACGTAATCCAGGCTACACATGAGGAATGCCTAAAGGGGGGGATGAATGGGTATGTTTCGAAACCATTTGAAGTTGAACGGCTTTACCGAGAAGTCTCTCAATGTTTCCGCAGAACCTCAAATGGAACTTTGTAG 2964 43.25 MNWFINGGGMEGKTGLLGGGGKIWLQLWEKVIGNCFKMHHQYYQYIGSKKVRKTWWRRVLVAWVLSSALASLWIFHYMSSQATEKRKEALGSMCDERARMLQDQFNVSMNHIQAMSILISTFHHGKNVSAIDQVQIGVAYAVRVLHSEREHFEKQQGWTIKRMDKIEQSPVHEDDYAPEDLEPSPTQDEYAPVIFAQDTISHVVSLDMLSGVEDRKNVIRARASGKGVLTAPFRLIKTNRLGVILTFAVYKRDLPSNATPNERIQATDGYLGGVFDIESLVEKLLQQLASNQTILVNVYDTTNQSHPISMYGGDVSEDGLQHVSPLNFGDPDRKHEMRCRFKQKQAWPWLAMTTSIGILIIALLLGYIFHATLNRIAKVEDDYHEMMELKKRAEDADVAKSQFLATVSHEIRTPMNGVLGMLHLLMDTDLDVTQQDYVKTAQDSGKALVSLINEVLDQAKIESGKLELEAIPFNLPAILDDILSLFSGKSQEKGLELAVYISDSVPEMLIGDPGRSTDVVNSEKGHIFVTVNLVEEVIESIDLEIESSTNSTLSGYPIANRRLSWAGFQTFSEEGPAACHFMPSPPELINLMVSVEDTGVGIPLEAQSCVFTPFMQVRPSISRTHGGTGIGLSISKCLVGLMKGEIGFVSVPKIGSTFTFTAVFTKCSSNSSEYNKTQQIKNISIPTSSEFKGMRALIVDHRPIRAKVSRYHIQRLGINVEVLSDLNQCLCSSTISGSTINMIFVEQDLWDKDTSTSDLFIKNLRNSYGVPPKLFLLTTSISSSKASTIVSDVFTPTVILKPLRSGMLAASLHRVMGVGIKGNPRNGELPVLSLRNLLLGRKILVIDDNKVNRIVAAGALQRYGADVVCENSGREAIRLLTPPHHFDACFMDIQMPEMDGFEATRRIREIELQIKNGIQAGELSIEAYENKCDWGVPILAMTADVIQATHEECLKGGMNGYVSKPFEVERLYREVSQCFRRTSNGTL 987
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 10735030 10740011 - CmoCh17G013850.1 Cmo17g01385 401768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g01385 987 CDD HisKA 399 460 IPR003661 GO:0000155|GO:0007165
Cmo17g01385 987 ProSiteProfiles Histidine kinase domain profile. 406 666 IPR005467 -
Cmo17g01385 987 Pfam Response regulator receiver domain 843 974 IPR001789 GO:0000160
Cmo17g01385 987 ProSiteProfiles Response regulatory domain profile. 842 979 IPR001789 GO:0000160
Cmo17g01385 987 ProSiteProfiles Response regulatory domain profile. 695 816 IPR001789 GO:0000160
Cmo17g01385 987 PANTHER HISTIDINE KINASE 3 29 981 - -
Cmo17g01385 987 CDD PRTases_typeI 786 868 IPR000836 -
Cmo17g01385 987 Gene3D CHASE domain 132 345 IPR042240 -
Cmo17g01385 987 Gene3D - 841 985 - -
Cmo17g01385 987 SUPERFAMILY CheY-like 690 817 IPR011006 -
Cmo17g01385 987 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 384 465 IPR036097 GO:0000155|GO:0007165
Cmo17g01385 987 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 453 661 IPR036890 -
Cmo17g01385 987 PANTHER TWO-COMPONENT HISTIDINE KINASE 29 981 - -
Cmo17g01385 987 SUPERFAMILY CheY-like 840 981 IPR011006 -
Cmo17g01385 987 Gene3D - 78 130 - -
Cmo17g01385 987 SMART HKATPase_4 521 666 IPR003594 -
Cmo17g01385 987 Pfam His Kinase A (phospho-acceptor) domain 399 464 IPR003661 GO:0000155|GO:0007165
Cmo17g01385 987 PRINTS Bacterial sensor protein C-terminal signature 591 605 IPR004358 GO:0016310|GO:0016772
Cmo17g01385 987 PRINTS Bacterial sensor protein C-terminal signature 609 619 IPR004358 GO:0016310|GO:0016772
Cmo17g01385 987 PRINTS Bacterial sensor protein C-terminal signature 626 644 IPR004358 GO:0016310|GO:0016772
Cmo17g01385 987 Gene3D - 368 462 - -
Cmo17g01385 987 SMART CHASE_2 127 313 IPR006189 -
Cmo17g01385 987 CDD REC_hyHK_CKI1_RcsC-like 843 975 - -
Cmo17g01385 987 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 589 665 IPR003594 -
Cmo17g01385 987 SMART HisKA_10 399 464 IPR003661 GO:0000155|GO:0007165
Cmo17g01385 987 SMART REC_2 841 975 IPR001789 GO:0000160
Cmo17g01385 987 Pfam CHASE domain 136 311 IPR006189 -
Cmo17g01385 987 Coils Coil 376 396 - -
Cmo17g01385 987 ProSiteProfiles CHASE domain profile. 137 338 IPR006189 -
Cmo17g01385 987 Gene3D - 463 669 IPR036890 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01837 Cmo-Chr11:12825491 Cmo17g01385 Cmo-Chr17:10735030 0 dispersed
Cmo17g01385 Cmo-Chr17:10735030 Cmo20g00674 Cmo-Chr20:3286073 0 dispersed
Cmo17g01385 Cmo-Chr17:10735030 Cmo08g00183 Cmo-Chr8:1074486 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11458 PF03924 CHASE 1.10E-30 CL0165 Cmo TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g01385 K14489 - csv:101216313 1737.62