Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00013 ATGGGCTGCTCCTTTTCTGGCTTGAATGCTCTGTACGATGCTGTCAATGGCGGCGGAGACATTTGGATCAACGAGAATCGGTTTAGGATCGTGAGGCAGCTCGGAGAAGGTGGGTTTGCCTTTGTGTTTTTGGTCAAAGAGGTTCTTTCGGACTCGTCTTCAGCCTCTGGCGGAGGTCTCGCCAAGAAATTGAAGGACCCATCTCGTCTTTCTGGTGATGGCACTTATGCTTTAAAAAAGGTACTGATTCAGAGCAGTGAACAATTGGAGCTGGTGAGGGAGGAGATACGTGTTTCGTCGCTTTTTAGTCATCCCAATCTACTTCCACTTCTTGACCATGCTATAATTGCAGTTAAGTCATCTACTGAAGGATCTGTAAAACATGAAGCCTACTTATTATTTCCAGTTCACTTGGATGGAACATTACTGGACAATGCCCAGACCATGAAGGCTAAGAAGGAATTCTTTTCTACTGTGGATGTCCTGGAAATATTTCGCCAGCTCTGTGCAGGGCTTAAGCATATGCACAGTAGTGAGCCTCCTTATGCACACAATGATGTGAAGCCTGGCAATGTTCTTTTAACTCATAGAAAAGGAAAGTCACCTCATGCAATATTGATGGATTTTGGCAGTGCTCGACCTGCTAGAAGGGAAATTCATTCTCGTTCGGAGGCACTCCAATTGCAGGAATGGGCATCTGAGCATTGTACGGCACCTTTCCGAGCACCAGAGCTATGGGATTGTCCAAGCCATGCAGACATTGATGAGAGGACTGATATCTGGTCACTGGGATGTACTTTGTATGCAATAATGTATGGGGTATCTCCATTTGAGTATGCACTTGGAGAATCTGGTGGAAGCCTTCAATTGGCAATTGTAAATGCACAAATCAAATGGCCAGCAGGACCTAATCCTCCATATCCTGATGCTCTCCATCAGTTTATAAAATGGATGCTTCAGCCGCAGGCTGCAGTTCGGCCTCGGATCGATGACATCGTCCTCCATGTTGACAAGTTGATCGCGAAGTTTTCTAATTAG 1038 45.66 MGCSFSGLNALYDAVNGGGDIWINENRFRIVRQLGEGGFAFVFLVKEVLSDSSSASGGGLAKKLKDPSRLSGDGTYALKKVLIQSSEQLELVREEIRVSSLFSHPNLLPLLDHAIIAVKSSTEGSVKHEAYLLFPVHLDGTLLDNAQTMKAKKEFFSTVDVLEIFRQLCAGLKHMHSSEPPYAHNDVKPGNVLLTHRKGKSPHAILMDFGSARPARREIHSRSEALQLQEWASEHCTAPFRAPELWDCPSHADIDERTDIWSLGCTLYAIMYGVSPFEYALGESGGSLQLAIVNAQIKWPAGPNPPYPDALHQFIKWMLQPQAAVRPRIDDIVLHVDKLIAKFSN 345
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 51520 55053 - CmoCh18G000130.1 Cmo18g00013 401786

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00013 345 Pfam Protein kinase domain 74 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00013 345 ProSitePatterns Protein kinases ATP-binding region signature. 34 63 IPR017441 GO:0005524
Cmo18g00013 345 SUPERFAMILY Protein kinase-like (PK-like) 20 335 IPR011009 -
Cmo18g00013 345 SMART serkin_6 28 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00013 345 CDD STKc_16 27 341 - -
Cmo18g00013 345 ProSiteProfiles Protein kinase domain profile. 28 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00013 345 PANTHER SERINE/THREONINE-PROTEIN KINASE 16 1 344 - -
Cmo18g00013 345 PANTHER - 1 344 - -
Cmo18g00013 345 ProSitePatterns Serine/Threonine protein kinases active-site signature. 182 194 IPR008271 GO:0004672|GO:0006468
Cmo18g00013 345 Gene3D Phosphorylase Kinase; domain 1 13 135 - -
Cmo18g00013 345 Gene3D Transferase(Phosphotransferase) domain 1 138 343 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00013 K08856 STK16; serine/threonine kinase 16 [EC:2.7.11.1] - csv:101208936 661.373
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo11g00241 Cmo18g00013 CCT
Cmo10g00288 Cmo18g00013 CCT
Cmo13g01093 Cmo18g00013 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00220 Cmo-Chr1:969480 Cmo18g00013 Cmo-Chr18:51520 4.34E-23 dispersed
Cmo14g01045 Cmo-Chr14:5729865 Cmo18g00013 Cmo-Chr18:51520 7.64E-20 dispersed
Cmo18g00013 Cmo-Chr18:51520 Cmo14g01850 Cmo-Chr14:13975738 1.20E-11 dispersed
Cmo10g00288 Cmo-Chr10:1286166 Cmo18g00013 Cmo-Chr18:51520 0 wgd
Cmo11g00241 Cmo-Chr11:1203597 Cmo18g00013 Cmo-Chr18:51520 0 wgd
Cmo13g01093 Cmo-Chr13:9008398 Cmo18g00013 Cmo-Chr18:51520 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g405 Blo04g00805 . . . . Bpe13g00330 . . Cmo13g01093 Cmo18g00013 Cma10g00270 Cma11g00237 Car10g00253 Car11g00216 Sed08g0316 Cpe20g00098 Cpe04g01434 Bhi02g00043 Tan09g1986 Cmetu02g0105 . Hepe09g0303 . . . . . . . . . Cone2ag0779 Cone16ag0257 . Cone19ag0024 . . Chy12g01467 Cme12g01910 . . . Bda14g00898 . Bpe15g00560 Bma03g00873 . Sed08g2148 Cmo10g00288 Cmo11g00241 . Cma18g00012 . . . Cpe18g00727 Bhi08g01044 Tan05g2310 Cmetu12g2001 . Hepe07g2431 . . . . . . . . . Lsi06g01375 Csa01g00318 Chy02g02423 Cme02g01794
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002165 2 3 1 2 1 2 2 2 2 2 1 2 2 2 2 4 2 2 4 2 2 2 2 2 3 1 2 5 2 1 64
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75028 PF00069 Pkinase 1.50E-29 CL0016 Cmo PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00013 Cmo_Chr18 FPKM 27.74728 28.047565 17.473978 17.098484 42.870232 47.45137 42.25692 26.140461 27.294271 26.964911