Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00019 ATGGGACGAGGGCGAGTGCAGTTGAAGAGGATTGAGAACAAGATCAATCGCCAAGTTACTTTCTCTAAAAGAAGGTCCGGTTTGCTGAAGAAAGCCCATGAGATTTCAGTTCTTTGTGATGCCGAAGTTGCTCTTATTGTCTTCTCCACCAAGGGCAAGCTCTTTGAATACTCCACTGATTCATGCATGGAGAAAATCCTGGAACGCTATGAAAGGTACTCCTATGCAGAAAGGAGACTTATTGCAAATGATAACCAATCAAATGGAAATTGGAGTCTTGAACATGCAAAGCTCAAAGCCAGGGTAGAGGTTCTACAGAAAAACCACAGGCATTTCATGGGGGAAGATCTTGACTCCTTGGCTCTAAAAGAGCTTCAAAATATTGAACAACAACTTGATTCTGCACTCAAACAAATAAGAGCTAGGAAGAACCAACTCATGCATGAATCCATTTCAGAGCTTCAGAAAAAGGACAAGGCCCTACAGGAGCAAAACAACATGTTAGCCAAGAAGATAAAAGAGAAGGAAAAAGCACAAGCTCAAAATCCACCATCGGAGCAGCAGCAGGAGTATAGCCATGGCGTTTCCCCGCTTCTCCTACCTCAGCCATTCCCATCTCTTGCCATGACCACGAGAGACAAAGACGTGGCTGCCAACTACGATAGATCGGCAGCCCTCCTGCCGCCGTGGATGCTCGGGCACCACCTTGGTGACTAA 717 45.75 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMEKILERYERYSYAERRLIANDNQSNGNWSLEHAKLKARVEVLQKNHRHFMGEDLDSLALKELQNIEQQLDSALKQIRARKNQLMHESISELQKKDKALQEQNNMLAKKIKEKEKAQAQNPPSEQQQEYSHGVSPLLLPQPFPSLAMTTRDKDVAANYDRSAALLPPWMLGHHLGD 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 78461 81010 - CmoCh18G000190.1 Cmo18g00019 401792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00019 238 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Cmo18g00019 238 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cmo18g00019 238 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cmo18g00019 238 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cmo18g00019 238 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cmo18g00019 238 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 215 - -
Cmo18g00019 238 MobiDBLite consensus disorder prediction 174 206 - -
Cmo18g00019 238 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cmo18g00019 238 Coils Coil 122 149 - -
Cmo18g00019 238 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Cmo18g00019 238 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cmo18g00019 238 Coils Coil 151 181 - -
Cmo18g00019 238 Pfam K-box region 85 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cmo18g00019 238 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cmo18g00019 238 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A 1 215 - -
Cmo18g00019 238 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Cmo18g00019 238 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cmo18g00019 238 MobiDBLite consensus disorder prediction 181 195 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g01180 Cmo-Chr14:9737822 Cmo18g00019 Cmo-Chr18:78461 3.65E-74 dispersed
Cmo18g00019 Cmo-Chr18:78461 Cmo18g00020 Cmo-Chr18:82092 3.33E-56 tandem
Cmo13g01103 Cmo-Chr13:9050079 Cmo18g00019 Cmo-Chr18:78461 7.15E-140 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11460 PF01486 K-box 1.00E-29 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00019 K09264 - csv:101207225 357.836