Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo18g00019 | ATGGGACGAGGGCGAGTGCAGTTGAAGAGGATTGAGAACAAGATCAATCGCCAAGTTACTTTCTCTAAAAGAAGGTCCGGTTTGCTGAAGAAAGCCCATGAGATTTCAGTTCTTTGTGATGCCGAAGTTGCTCTTATTGTCTTCTCCACCAAGGGCAAGCTCTTTGAATACTCCACTGATTCATGCATGGAGAAAATCCTGGAACGCTATGAAAGGTACTCCTATGCAGAAAGGAGACTTATTGCAAATGATAACCAATCAAATGGAAATTGGAGTCTTGAACATGCAAAGCTCAAAGCCAGGGTAGAGGTTCTACAGAAAAACCACAGGCATTTCATGGGGGAAGATCTTGACTCCTTGGCTCTAAAAGAGCTTCAAAATATTGAACAACAACTTGATTCTGCACTCAAACAAATAAGAGCTAGGAAGAACCAACTCATGCATGAATCCATTTCAGAGCTTCAGAAAAAGGACAAGGCCCTACAGGAGCAAAACAACATGTTAGCCAAGAAGATAAAAGAGAAGGAAAAAGCACAAGCTCAAAATCCACCATCGGAGCAGCAGCAGGAGTATAGCCATGGCGTTTCCCCGCTTCTCCTACCTCAGCCATTCCCATCTCTTGCCATGACCACGAGAGACAAAGACGTGGCTGCCAACTACGATAGATCGGCAGCCCTCCTGCCGCCGTGGATGCTCGGGCACCACCTTGGTGACTAA | 717 | 45.75 | MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTDSCMEKILERYERYSYAERRLIANDNQSNGNWSLEHAKLKARVEVLQKNHRHFMGEDLDSLALKELQNIEQQLDSALKQIRARKNQLMHESISELQKKDKALQEQNNMLAKKIKEKEKAQAQNPPSEQQQEYSHGVSPLLLPQPFPSLAMTTRDKDVAANYDRSAALLPPWMLGHHLGD | 238 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 78461 | 81010 | - | CmoCh18G000190.1 | Cmo18g00019 | 401792 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo18g00019 | 238 | Gene3D | - | 13 | 86 | IPR036879 | GO:0003677|GO:0046983 | |
Cmo18g00019 | 238 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Cmo18g00019 | 238 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Cmo18g00019 | 238 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Cmo18g00019 | 238 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Cmo18g00019 | 238 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 215 | - | - | |
Cmo18g00019 | 238 | MobiDBLite | consensus disorder prediction | 174 | 206 | - | - | |
Cmo18g00019 | 238 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Cmo18g00019 | 238 | Coils | Coil | 122 | 149 | - | - | |
Cmo18g00019 | 238 | CDD | MADS_MEF2_like | 2 | 76 | IPR033896 | GO:0000977|GO:0045944 | |
Cmo18g00019 | 238 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Cmo18g00019 | 238 | Coils | Coil | 151 | 181 | - | - | |
Cmo18g00019 | 238 | Pfam | K-box region | 85 | 172 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cmo18g00019 | 238 | ProSiteProfiles | K-box domain profile. | 88 | 178 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cmo18g00019 | 238 | PANTHER | TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A | 1 | 215 | - | - | |
Cmo18g00019 | 238 | SUPERFAMILY | SRF-like | 2 | 91 | IPR036879 | GO:0003677|GO:0046983 | |
Cmo18g00019 | 238 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Cmo18g00019 | 238 | MobiDBLite | consensus disorder prediction | 181 | 195 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo14g01180 | Cmo-Chr14:9737822 | Cmo18g00019 | Cmo-Chr18:78461 | 3.65E-74 | dispersed | |
Cmo18g00019 | Cmo-Chr18:78461 | Cmo18g00020 | Cmo-Chr18:82092 | 3.33E-56 | tandem | |
Cmo13g01103 | Cmo-Chr13:9050079 | Cmo18g00019 | Cmo-Chr18:78461 | 7.15E-140 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11460 | PF01486 | K-box | 1.00E-29 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo18g00019 | K09264 | - | csv:101207225 | 357.836 |