Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00020 ATGGGGAGAGGGAGAGTTGAGTTGAAGCGAATTGAGAACAAAATTAACAGGCAGGTTACTTTTGCCAAGAGAAGAAATGGGTTGCTCAAGAAAGCTTATGAACTCTCAGTTCTTTGCGATGCTGAAGTTGCTCTCATCATCTTCTCTAATCGTGGCAAGCTCTTTGAGTTTTCTGGTGGCTCTAGCATGACTAGGACGCTCGAGAAGTATCGAAGGTGTAGTTATGACATACGGGATGGTGCCCGCCACCTAAATAACAATGGGCAGCCACAGAGCTTTGATGATTACTTGAACCTCAAAGCCACAGTTGAATTGATGCAGCAATCTCAGAGAAACCTTCTGGGGGAAGATTTAGGACCGCTGAATGCCAAGGAACTTGAGCAACTTGAGCATCAATTGGAGACATCCTTGGAGCGCATTAGATCCACAAAGACACGAACCCTAATGGAGCAGCTTGCAGAACTTCAACGCAAGGAGCATATGCTTGTTGAAGACAACCGAAGTTTAAGAAAGAAGCTGGAAGAAAGCAGCGCGCAAGTAGCGGCAGCCTCCGCGGCGTGGGGCTGGGAAGGCGGCGCGGGAGGACACAGCATGGACTATCCCAGCCGCATTGCTTCACAATCAGACGCCTTTTTCTACCCCATAACGCAACCCATTCCCACTTTACAAATTGGGTACAATTCTGTTGGCTCAGTTGGATTGAGTAATAATAATACTAATAATAACAATAGTAATGCTGGAGCTCCACCCCAAAATGGCAATGGATTTCAGCTTGGATGGATGCTCTAA 789 46.77 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLFEFSGGSSMTRTLEKYRRCSYDIRDGARHLNNNGQPQSFDDYLNLKATVELMQQSQRNLLGEDLGPLNAKELEQLEHQLETSLERIRSTKTRTLMEQLAELQRKEHMLVEDNRSLRKKLEESSAQVAAASAAWGWEGGAGGHSMDYPSRIASQSDAFFYPITQPIPTLQIGYNSVGSVGLSNNNTNNNNSNAGAPPQNGNGFQLGWML 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 82092 84681 - CmoCh18G000200.1 Cmo18g00020 401793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00020 262 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677|GO:0046983
Cmo18g00020 262 Coils Coil 152 186 - -
Cmo18g00020 262 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cmo18g00020 262 Coils Coil 123 146 - -
Cmo18g00020 262 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 233 - -
Cmo18g00020 262 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cmo18g00020 262 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Cmo18g00020 262 Gene3D - 13 92 IPR036879 GO:0003677|GO:0046983
Cmo18g00020 262 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cmo18g00020 262 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cmo18g00020 262 Pfam K-box region 92 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cmo18g00020 262 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 233 - -
Cmo18g00020 262 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cmo18g00020 262 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cmo18g00020 262 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cmo18g00020 262 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo08g00175 Cmo-Chr8:1016886 Cmo18g00020 Cmo-Chr18:82092 8.31E-79 dispersed
Cmo12g00087 Cmo-Chr12:471646 Cmo18g00020 Cmo-Chr18:82092 4.97E-69 dispersed
Cmo17g01377 Cmo-Chr17:10695432 Cmo18g00020 Cmo-Chr18:82092 2.28E-77 dispersed
Cmo18g00019 Cmo-Chr18:78461 Cmo18g00020 Cmo-Chr18:82092 3.33E-56 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11461 PF01486 K-box 2.80E-25 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00020 K09264 K09260 csv:101204197 365.155