Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00026 ATGGCTTCCCTACTCTCTTCTGCTTTCTTCCTCCTCTTTCTGTTCTTCCACTTCTTCTCTGCAACTTGCACTGAATTCCTCGTCGGTGATGAACATGGGTGGGCTGTCCCTCAGCATAAACACGCTGATAGATACAATAAATGGGCCTCCCATAACAGATTCAACGTTGATGACACCCTCCATTTCAAGTTCGAGAAAGATTCAGTGATGGAGGTGACAGAGGAAGAGTACAAGCAATGCCTTTCTTCGAAGCCTCTGTTGTACAACAACAATGGCGACGCAGTGGTGAGACTTGAGAGAGCAGGGCTGTTCTATTTCATAAGTGGAGTTTCAGGGCACTGTGAGAAAGGGCAGAGGATGATAATCAAAGTGTTGGAACCGCTCAGCCCTCCGCAGCCACCCACTGCTCCGCCCCAAAACAACAACACCCCACTCTCTGTTTCATCTCCAATGCTTGCACTTTTCTTCATGTTCTTTGTTTCCTTTCTGTTCATTTGA 498 47.19 MASLLSSAFFLLFLFFHFFSATCTEFLVGDEHGWAVPQHKHADRYNKWASHNRFNVDDTLHFKFEKDSVMEVTEEEYKQCLSSKPLLYNNNGDAVVRLERAGLFYFISGVSGHCEKGQRMIIKVLEPLSPPQPPTAPPQNNNTPLSVSSPMLALFFMFFVSFLFI 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 105211 106123 + CmoCh18G000260.1 Cmo18g00026 401799

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00026 165 Pfam Plastocyanin-like domain 34 118 IPR003245 GO:0009055
Cmo18g00026 165 ProSiteProfiles Phytocyanin domain profile. 24 126 IPR003245 GO:0009055
Cmo18g00026 165 Gene3D - 22 128 IPR008972 -
Cmo18g00026 165 PANTHER BLUE COPPER PROTEIN 9 158 IPR039391 GO:0009055
Cmo18g00026 165 SUPERFAMILY Cupredoxins 23 125 IPR008972 -
Cmo18g00026 165 PANTHER EARLY NODULIN-LIKE PROTEIN 6 9 158 - -
Cmo18g00026 165 CDD OsENODL1_like 24 125 IPR041846 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00026 - - - cmo:103495780 201.445
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02787 Cmo-Chr4:20071910 Cmo18g00026 Cmo-Chr18:105211 1.92E-41 dispersed
Cmo18g00026 Cmo-Chr18:105211 Cmo17g00749 Cmo-Chr17:7389175 1.55E-34 dispersed
Cmo01g01115 Cmo-Chr1:9235532 Cmo18g00026 Cmo-Chr18:105211 2.38E-24 transposed
Cmo13g01087 Cmo-Chr13:8985209 Cmo18g00026 Cmo-Chr18:105211 4.65E-56 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo18g00026 . 12 146 Phytocyanin Superfamily AT1G48940 55.5 2.0e-38 156.4
Cmo11g01201 . 24 166 Phytocyanin Superfamily AT3G01070 54.4 6.4e-39 157.9
Cmo14g00570 CST 19 178 Phytocyanin Superfamily AT3G01070 51.5 1.3e-36 150.2
Cmo05g00351 CST 7 171 Phytocyanin Superfamily AT2G25060 53.3 1.0e-42 170.6
Cmo14g00570 CST 26 185 Phytocyanin Superfamily AT5G15350 50.9 4.0e-44 175.3
Cmo11g01201 . 28 162 Phytocyanin Superfamily AT5G15350 55.5 5.8e-43 171.4
Cmo05g00351 CST 16 171 Phytocyanin Superfamily AT4G31840 54.5 8.3e-45 177.6
Cmo18g00026 . 12 146 Phytocyanin Superfamily AT1G48940 55.5 2.0e-38 156.4
Cmo12g00319 CST 21 165 Phytocyanin Superfamily AT5G25090 57.7 3.5e-38 155.6
Cmo05g00351 CST 7 171 Phytocyanin Superfamily AT2G25060 53.3 1.0e-42 170.6
Cmo05g00351 CST 16 171 Phytocyanin Superfamily AT4G31840 54.5 8.3e-45 177.6
Cmo11g01201 . 24 166 Phytocyanin Superfamily AT3G01070 54.4 6.4e-39 157.9
Cmo14g00570 CST 19 178 Phytocyanin Superfamily AT3G01070 51.5 1.3e-36 150.2
Cmo14g00570 CST 26 185 Phytocyanin Superfamily AT5G15350 50.9 4.0e-44 175.3
Cmo11g01201 . 28 162 Phytocyanin Superfamily AT5G15350 55.5 5.8e-43 171.4
Cmo20g00135 . 19 229 Phytocyanin Superfamily AT1G08500 59.4 3.0e-63 239.2
Cmo10g01025 . 32 173 Phytocyanin Superfamily AT2G27035 54.2 4.6e-42 168.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000973 5 4 1 1 2 2 4 2 2 3 3 2 3 3 3 3 2 2 5 3 2 4 3 3 2 3 2 3 2 3 82
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00026 Cmo_Chr18 FPKM 0.396313 0.230524 3.648466 3.480354 23.38578 22.649214 23.765776 0.0 0.092959 0.0