Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo18g00028 | ATGGGTGGTGGCAGAAGAAAAAGGAGGCAGCATTTCAGAAGGATTCATGCCTTTACTTGTGGAAGAGCTTCATTCAAAGACGAGCATTCTTTAATTGGAGGGCCTGGTTTCTCCAGGGTAGTTTACTGTAACGATCCAGATAGCTCTGAGGCAAGTCTTCTCAACTATGGAGACAATTATGTCAAAACTTCCAAATATACCGTTGCTTCATTCTTCCCCAAATCCTTGTTTGAGCAATTCAGAAGGGTCGCCAACTTGTATTTCCTCCTTTGTGCTTGCCTTTCCTTTACCCCTCTTTCGCCCTATTCCCCCGTCAGTAATGTTCTTCCTCTTGTTGTTGTTGTTGGAGCCACCATGGCCAAAGAGGCCCATGAAGATTGGAAGAGAACCAAACAGGATATGGAGATGAATAACAGGGAGGTGAAAGTTCATATTCGAGATGGAGAGTTTGTTGAGACTAAATGGATGGAATTGAAGGTTGGAGATGTAGTTAAAGTGGAGAAGGATGAATTCTTCCCTGCTGATCTTATTCTGCTTTCGTCGAGTTATGAGGAAGCGATTTGCTACGTCGAGACGATGAATCTCGACGGGGAAACTAATTTGAAACTGAAGAACGCATTAGAAGCGAGCTCGAACTTGCATGAAGATTCCAGCTTCCAGAATTTCAAGGCTATAATAAAATGTGAAGATCCGAATGCAAACTTGTATGCCTTTGTGGGGAGTATGGAGCTGGAAGAGCAGCAATACCCCCTCAGCCCTCAACAGCTTCTTCTTCGGGACTCGAAGCTGCGAAACACTGATTTTATATACGGCGTCGTGATCTTCACAGGTCGTGATACAAAGGTTATGCAGAACTCAACTGCTCCTCCTTCCAAGAGAAGCAAGATTGAAAAGAGGATGGACAAGGTTGTGTTCTTCTTGTTCGCTGTCTTGGTTTTGATATCAATTGCGGGGTCGATTTTCTTCGGAGTTTCAACTAGAGACGATATCGATAATGGAAGAAGTACGAGATGGTACCTTAGGCCAGACGATACCACAATGTATTACAACCCGAAAAATGCTCCAGCTGCAGCAGTATTGCAATTTTTCACATCTCTTATGCTTTTTAGCTATTTGATTCCCATATCATTGTATGTGTCCATAGAAATTGTCAAAGTTCTGCAGAGTGCCTTCATCAACCAAGATACACACATGTACTACGAGGAAACTGATACGCCCGCACATGCCCGTACCTCAAATTTGAATGAAGAGCTTGGCCAAGTCGACACCATACTCTCGGATAAAACGGGGACATTGACCTGCAATTCGATGGAGTTTATCAAGTGTTCGGTGGGCGGGACTGCTTACGGGCGAGGAATCACAGAAGTAGAGAGAGCTCTTGCAAGAAGAAAGGAGTCAAGTTTACCTGAAAATCTAGGGGCCAACAATGCACGTCTTAGCAGTGAAAAACCACTCATTAAGGGGTTTAACTTCAAGGATGATAGAATAATGGAAGGTAATTGGGTGAAGGAGCCTCGAGCCGATGTAATCCAAAAGTTCCTACAGGTACTGGCCATCTGTCACACTGCATTGCCAGAAATTGATGAGGAAACTGGAAGTATTTCATATGAAGCTGAATCACCAGATGAGGCAGCTTTTGTGATTGCAGCCAGAGAATTCGGTTTTGAATTCTATGAAAGGACTCAGACAAGCATTTTGCTGCGCGAGTTCGACCCGACCTCCGCCAAAAAAGTTGAAAGATCATATCAACTACTGGATGTTTTGGAATTTAATAGCACAAGAAAGAGGATGTCTGTGATTGTAAGAAATGCAAAGGGACAGTTGCTACTACTTTGTAAAGGAGCTGACAGTGTTATGTTTGAAAGACTTGCAAAGAATGGAAGTGAGTTTGAAGAACAAACTAAGGTGCACATCAATGAGTATGCGGATGCTGGTTTAAGAACTTTGGTGCTTGCATACCGCGAGCTGAAGGAGGAGGAATTCAATACATTTCATCAAGAATTCATCAAAGCCAAAAACACGGTGAGCGAAGATCGTGATGGCATAATCGATCAGTTAATCGAAAGCGTTGAGAAAGATTTGATTCTTCTTGGTGCTACAGCAGTTGAAGATAAACTTCAAAATGGGGTCCCTGAATGCATTGACAAACTTGCTCAAGCTGGAATCAAAATATGGGTTCTGACTGGAGATAAAATGGAAACTGCCATCAATATTGGCTTTGCTTGTAGCTTACTTAGACAAGGAATGAGGCAAATAATTATCAGTTCAGAGACTCCGGAAGGGAAAGCTTTAGACAAAGTGGAAGATTCTCAAAAATCTGCAGCTATGAAGGCGTTCAAGGAAAGTGTGATGCAGCAACTAACTGATGCAAAGGCATTACTTTCGAGTTCGACCAAAACCCGGGAAGCATTGGCTTTGATAATTGATGGAAAGTCCCTCACCTACGCTTTGGAGGATGATGTGAAGAACCTATTTCTGGAGCTTGCCATTGGTTGTGCTTCAGTTATATGCTGCAGATCATCTCCTAAACAGAAAGCTCAAGTTACCCAATTGGTCAAGGTTAAAACAGGAGGCACCACTCTAGCAGTTGGTGATGGTGCAAACGATGTCGGAATGCTCCAAGAAGCGGATATCGGGATCGGTATTAGCGGTGTAGAAGGAATGCAGGCAGTCATGTCAAGTGATATTGCAATAGCGCAGTTTCGATATTTAGAGAGGCTTCTCCTTGTGCATGGACATTGGTGTTACAGAAGGATCTCTTCCATGATATGCTATTTCTTCTACAAGAACATCGTTTTTGGGTTCACTCTCTTCTTCTTTGAGTTGTATGCATCATTCTCCGGCCAAGCTGTATACAATGACTGGTTCCTTTCGCTGTACAACGTCTTCTTTACGTCTCTCCCTGTGATCGCATTGGGAGTATTCGATCAAGACGTCTCGTCCCGGTACTGTCTTAAGTTCCCACTTTTATACCAAGAAGGTGTCCAAAATGTGTTGTTTAGTTGGGTTCGAGTTATCGGGTGGGTGTTCAATGGACTACTGAGTTCTGTGATCATCTTCTTCTTCTGTGTTGTGGCAATGGAACATCAAGCTTTCCGCAACAGTGGAGAGGTGGTTGGGTTGGAAATTCTGGGTGCCACCATGTGCACTTGTGTTGTTTGGGTTGTGAACTGTCAAATGGCATTGTCAATCAGTTACTTCACATACATTCAACATCTCTTCATCTGGGGCAGCATCATTCTCTGGTACTTATTCCTTATGGCATATGGAGCTATGAACCCAACCATATCAACCACGGCATTTCAGGTCTTCATCGAGGCATGCGCCCCGGCACCGTCGTTTTGGATCCTCACACTATTAGCTCTCGGGGCATCCCTTCTCCCATACTTCATCTACGCATCCATCCAAATGCGGTTCTTCCCAATGTACCATCAAATGATTCAATGGATGAAAGAAGACGGGCAATCAAACGATCCAGAATACTGTCAAGTAGTGAGACAGAGATCGCTACGACACACGACCGTTGGTTACACAGCTCGGTTTGAAGCATCGAAGCGGTTTGAAGACATCCAAGAATTCAAGAACCATTAG | 3591 | 43.72 | MGGGRRKRRQHFRRIHAFTCGRASFKDEHSLIGGPGFSRVVYCNDPDSSEASLLNYGDNYVKTSKYTVASFFPKSLFEQFRRVANLYFLLCACLSFTPLSPYSPVSNVLPLVVVVGATMAKEAHEDWKRTKQDMEMNNREVKVHIRDGEFVETKWMELKVGDVVKVEKDEFFPADLILLSSSYEEAICYVETMNLDGETNLKLKNALEASSNLHEDSSFQNFKAIIKCEDPNANLYAFVGSMELEEQQYPLSPQQLLLRDSKLRNTDFIYGVVIFTGRDTKVMQNSTAPPSKRSKIEKRMDKVVFFLFAVLVLISIAGSIFFGVSTRDDIDNGRSTRWYLRPDDTTMYYNPKNAPAAAVLQFFTSLMLFSYLIPISLYVSIEIVKVLQSAFINQDTHMYYEETDTPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSVGGTAYGRGITEVERALARRKESSLPENLGANNARLSSEKPLIKGFNFKDDRIMEGNWVKEPRADVIQKFLQVLAICHTALPEIDEETGSISYEAESPDEAAFVIAAREFGFEFYERTQTSILLREFDPTSAKKVERSYQLLDVLEFNSTRKRMSVIVRNAKGQLLLLCKGADSVMFERLAKNGSEFEEQTKVHINEYADAGLRTLVLAYRELKEEEFNTFHQEFIKAKNTVSEDRDGIIDQLIESVEKDLILLGATAVEDKLQNGVPECIDKLAQAGIKIWVLTGDKMETAINIGFACSLLRQGMRQIIISSETPEGKALDKVEDSQKSAAMKAFKESVMQQLTDAKALLSSSTKTREALALIIDGKSLTYALEDDVKNLFLELAIGCASVICCRSSPKQKAQVTQLVKVKTGGTTLAVGDGANDVGMLQEADIGIGISGVEGMQAVMSSDIAIAQFRYLERLLLVHGHWCYRRISSMICYFFYKNIVFGFTLFFFELYASFSGQAVYNDWFLSLYNVFFTSLPVIALGVFDQDVSSRYCLKFPLLYQEGVQNVLFSWVRVIGWVFNGLLSSVIIFFFCVVAMEHQAFRNSGEVVGLEILGATMCTCVVWVVNCQMALSISYFTYIQHLFIWGSIILWYLFLMAYGAMNPTISTTAFQVFIEACAPAPSFWILTLLALGASLLPYFIYASIQMRFFPMYHQMIQWMKEDGQSNDPEYCQVVRQRSLRHTTVGYTARFEASKRFEDIQEFKNH | 1196 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 119077 | 124354 | + | CmoCh18G000280.1 | Cmo18g00028 | 401801 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo18g00028 | 1196 | SUPERFAMILY | HAD-like | 420 | 918 | IPR036412 | - | |
Cmo18g00028 | 1196 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 496 | 699 | IPR023299 | GO:0000166 | |
Cmo18g00028 | 1196 | CDD | P-type_ATPase_APLT_Dnf-like | 58 | 1023 | - | - | |
Cmo18g00028 | 1196 | SUPERFAMILY | Calcium ATPase, transduction domain A | 143 | 285 | IPR008250 | - | |
Cmo18g00028 | 1196 | Gene3D | - | 107 | 288 | - | - | |
Cmo18g00028 | 1196 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 427 | 433 | IPR018303 | - | |
Cmo18g00028 | 1196 | Gene3D | - | 698 | 903 | IPR023214 | - | |
Cmo18g00028 | 1196 | SFLD | C1.7: P-type atpase like | 407 | 914 | - | - | |
Cmo18g00028 | 1196 | Pfam | E1-E2 ATPase | 136 | 328 | - | - | |
Cmo18g00028 | 1196 | SFLD | p-type atpase | 407 | 914 | IPR044492 | - | |
Cmo18g00028 | 1196 | Gene3D | - | 538 | 697 | IPR023299 | GO:0000166 | |
Cmo18g00028 | 1196 | PRINTS | P-type cation-transporting ATPase superfamily signature | 425 | 439 | - | - | |
Cmo18g00028 | 1196 | PRINTS | P-type cation-transporting ATPase superfamily signature | 863 | 882 | - | - | |
Cmo18g00028 | 1196 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 50 | 1141 | IPR023298 | - | |
Cmo18g00028 | 1196 | PANTHER | PHOSPHOLIPID-TRANSPORTING ATPASE | 4 | 1188 | - | - | |
Cmo18g00028 | 1196 | Pfam | Phospholipid-translocating P-type ATPase C-terminal | 891 | 1141 | IPR032630 | - | |
Cmo18g00028 | 1196 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 829 | 946 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
Cmo18g00028 | 1196 | TIGRFAM | ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase | 56 | 1148 | IPR006539 | GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326 | |
Cmo18g00028 | 1196 | Pfam | Cation transport ATPase (P-type) | 536 | 623 | - | - | |
Cmo18g00028 | 1196 | Pfam | Phospholipid-translocating ATPase N-terminal | 41 | 107 | IPR032631 | - | |
Cmo18g00028 | 1196 | PANTHER | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE | 4 | 1188 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo08g00748 | Cmo-Chr8:4733146 | Cmo18g00028 | Cmo-Chr18:119077 | 0 | dispersed | |
Cmo15g00548 | Cmo-Chr15:2610755 | Cmo18g00028 | Cmo-Chr18:119077 | 0 | dispersed | |
Cmo15g01500 | Cmo-Chr15:10177017 | Cmo18g00028 | Cmo-Chr18:119077 | 0 | dispersed | |
Cmo17g00688 | Cmo-Chr17:7022461 | Cmo18g00028 | Cmo-Chr18:119077 | 0 | dispersed | |
Cmo18g00028 | Cmo-Chr18:119077 | Cmo18g01081 | Cmo-Chr18:11365450 | 0 | dispersed | |
Cmo13g01090 | Cmo-Chr13:8998731 | Cmo18g00028 | Cmo-Chr18:119077 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo18g00028 | K01530 | K14802 | csv:101209427 | 2135.92 |