Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00036 ATGGCTGCTGAGTTCACTCCAAACTTTCAGACCTTAAAGCCATCACCTTTTCCTCTAATGGAAGCCGATTCCAACATTCCTGTTTTGTTTAATGACAGTTTCTTTTCCGACCACGCTGCTCCTCCCAGATTCCCGGAAAACCGTCGAGAAAATCTCCCAGAAATTTTCTCTCCAGCCAATCAGCTCGCTTCCCCTGTTTTTGAGCGCAAGAAAAGAAAGCTTGAAACTGACGCTTCTGCAAGCAGTTCCGGAAATTCATTACCTCAGCGTTCTGAAACTGCGATCAACACTAAAAACAGCTCTGGAAGAGGAAAGCAGCCGGAAAAAGGCAGGGGAGTGGTTCATGTTAGAGCCAAAAGAGGTCAAGCAACGGACAGCCACAGTGTAGCTGAAAGGATTAGAAGAGGCAAAATCAATGAAAGATTGAGATGTTTGCAAGACATTGTACCAGGATGTTACAAGACAATGGGAATGGCAGTGATGTTGGATGAGATCATTAATTACGTGCAGTCTTTGCAGAATCAAGTTGAGTTTCTTTCTATGAAACTCACAGCTGCAAGCTCCTATTATGACTTCAACTCAGACGAAGCATATGAACACGCTTAG 606 44.06 MAAEFTPNFQTLKPSPFPLMEADSNIPVLFNDSFFSDHAAPPRFPENRRENLPEIFSPANQLASPVFERKKRKLETDASASSSGNSLPQRSETAINTKNSSGRGKQPEKGRGVVHVRAKRGQATDSHSVAERIRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASSYYDFNSDEAYEHA 201
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
18 213740 214908 - CmoCh18G000360.1 Cmo18g00036 401809
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00036 201 Gene3D - 119 190 IPR036638 GO:0046983
Cmo18g00036 201 MobiDBLite consensus disorder prediction 104 129 - -
Cmo18g00036 201 MobiDBLite consensus disorder prediction 71 129 - -
Cmo18g00036 201 Pfam Helix-loop-helix DNA-binding domain 126 173 IPR011598 GO:0046983
Cmo18g00036 201 PANTHER TRANSCRIPTION FACTOR BEE 1 55 195 - -
Cmo18g00036 201 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 120 190 IPR036638 GO:0046983
Cmo18g00036 201 MobiDBLite consensus disorder prediction 78 103 - -
Cmo18g00036 201 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 55 195 IPR024097 GO:0006355
Cmo18g00036 201 CDD bHLH_AtBPE_like 112 195 - -
Cmo18g00036 201 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 122 172 IPR011598 GO:0046983
Cmo18g00036 201 SMART finulus 128 178 IPR011598 GO:0046983
       

Event-related genes


       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo10g00243 Cmo-Chr10:1081086 Cmo18g00036 Cmo-Chr18:213740 4.56E-64 dispersed
Cmo15g00954 Cmo-Chr15:4914492 Cmo18g00036 Cmo-Chr18:213740 3.42E-50 dispersed
Cmo18g00036 Cmo-Chr18:213740 Cmo08g00241 Cmo-Chr8:1463780 8.24E-36 dispersed
Cmo11g00282 Cmo-Chr11:1371030 Cmo18g00036 Cmo-Chr18:213740 7.18E-60 wgd
Cmo13g01064 Cmo-Chr13:8842441 Cmo18g00036 Cmo-Chr18:213740 1.02E-95 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11464 PF00010 HLH 3.30E-05 No_clan Cmo TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00036 - - cmax:111489917 384.8