Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo18g00036 | ATGGCTGCTGAGTTCACTCCAAACTTTCAGACCTTAAAGCCATCACCTTTTCCTCTAATGGAAGCCGATTCCAACATTCCTGTTTTGTTTAATGACAGTTTCTTTTCCGACCACGCTGCTCCTCCCAGATTCCCGGAAAACCGTCGAGAAAATCTCCCAGAAATTTTCTCTCCAGCCAATCAGCTCGCTTCCCCTGTTTTTGAGCGCAAGAAAAGAAAGCTTGAAACTGACGCTTCTGCAAGCAGTTCCGGAAATTCATTACCTCAGCGTTCTGAAACTGCGATCAACACTAAAAACAGCTCTGGAAGAGGAAAGCAGCCGGAAAAAGGCAGGGGAGTGGTTCATGTTAGAGCCAAAAGAGGTCAAGCAACGGACAGCCACAGTGTAGCTGAAAGGATTAGAAGAGGCAAAATCAATGAAAGATTGAGATGTTTGCAAGACATTGTACCAGGATGTTACAAGACAATGGGAATGGCAGTGATGTTGGATGAGATCATTAATTACGTGCAGTCTTTGCAGAATCAAGTTGAGTTTCTTTCTATGAAACTCACAGCTGCAAGCTCCTATTATGACTTCAACTCAGACGAAGCATATGAACACGCTTAG | 606 | 44.06 | MAAEFTPNFQTLKPSPFPLMEADSNIPVLFNDSFFSDHAAPPRFPENRRENLPEIFSPANQLASPVFERKKRKLETDASASSSGNSLPQRSETAINTKNSSGRGKQPEKGRGVVHVRAKRGQATDSHSVAERIRRGKINERLRCLQDIVPGCYKTMGMAVMLDEIINYVQSLQNQVEFLSMKLTAASSYYDFNSDEAYEHA | 201 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 18 | 213740 | 214908 | - | CmoCh18G000360.1 | Cmo18g00036 | 401809 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo18g00036 | 201 | Gene3D | - | 119 | 190 | IPR036638 | GO:0046983 | |
| Cmo18g00036 | 201 | MobiDBLite | consensus disorder prediction | 104 | 129 | - | - | |
| Cmo18g00036 | 201 | MobiDBLite | consensus disorder prediction | 71 | 129 | - | - | |
| Cmo18g00036 | 201 | Pfam | Helix-loop-helix DNA-binding domain | 126 | 173 | IPR011598 | GO:0046983 | |
| Cmo18g00036 | 201 | PANTHER | TRANSCRIPTION FACTOR BEE 1 | 55 | 195 | - | - | |
| Cmo18g00036 | 201 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 120 | 190 | IPR036638 | GO:0046983 | |
| Cmo18g00036 | 201 | MobiDBLite | consensus disorder prediction | 78 | 103 | - | - | |
| Cmo18g00036 | 201 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 55 | 195 | IPR024097 | GO:0006355 | |
| Cmo18g00036 | 201 | CDD | bHLH_AtBPE_like | 112 | 195 | - | - | |
| Cmo18g00036 | 201 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 122 | 172 | IPR011598 | GO:0046983 | |
| Cmo18g00036 | 201 | SMART | finulus | 128 | 178 | IPR011598 | GO:0046983 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cmo10g00243 | Cmo18g00036 | CCT | |
| Cmo11g00282 | Cmo18g00036 | CCT | |
| Cmo11g00282 | Cmo18g00036 | ECH | |
| Cmo10g00243 | Cmo18g00036 | ECH | |
| Cmo13g01064 | Cmo18g00036 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo10g00243 | Cmo-Chr10:1081086 | Cmo18g00036 | Cmo-Chr18:213740 | 4.56E-64 | dispersed | |
| Cmo15g00954 | Cmo-Chr15:4914492 | Cmo18g00036 | Cmo-Chr18:213740 | 3.42E-50 | dispersed | |
| Cmo18g00036 | Cmo-Chr18:213740 | Cmo08g00241 | Cmo-Chr8:1463780 | 8.24E-36 | dispersed | |
| Cmo11g00282 | Cmo-Chr11:1371030 | Cmo18g00036 | Cmo-Chr18:213740 | 7.18E-60 | wgd | |
| Cmo13g01064 | Cmo-Chr13:8842441 | Cmo18g00036 | Cmo-Chr18:213740 | 1.02E-95 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 11464 | PF00010 | HLH | 3.30E-05 | No_clan | Cmo | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo18g00036 | - | - | cmax:111489917 | 384.8 |