Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00040 ATGACTATCAAAACTCCTGCAACGCCAGCTTCAAAAACAGAGAGGACGCCAGCATCAACACCTGGAGGACCTCGATCTAAGGAAGAGAAAATCGTTGTTACAGTTCGGTTAAGGCCTCTGAATAAAAAGGAGCAGCAAGCGAAAGATCAAATGGCATGGGAGTGCATTGATGATACTACGATTGTGTACAAACCTCAGCCTCAGGAACGTCAAACTCAACCGTCCTCCTTTGCATTTGATAAAGTTTTCGGTCCCGCTTCTTTGACTGAGGCAGTATATGAGGAAGGAGTAAAGAATGTTGCCTTATCTTCTCTGATGGGCATCAATGCCACGATATTCGCTTATGGGCAAACTAGCAGTGGGAAAACATTTACAATGAGGGGGATAACTGAGAAGGCTGTTAATGATATCTACAGACATATTAGCAATACACCCGAGAGAGATTTTACAATAAGAATTTCAGGACTCGAAATATACAACGAGAATGTTAGGGATCTTTTGAATACCGAATCAGGTCGTAATCTAAAGCTTCTTGATGATCCTGAGAAAGGTACAATGGTTGAGAAATTAGTAGAGGAAACGGCAAATGATGATCGACATTTGAGACAATTGATTAGCATCTGCGAGGCACAAAGACAAGTTGGTGAAACTGCCTTAAATGATCATAGCTCCCGTTCACATCAGATAATAAGACTGACAATTCAAAGTACCCTACGAGAGACTTCAGATTGCGTGAGGACTTTTGTGGCAAGCTTGAACTTTGTGGATCTAGCTGGAAGTGAGAGAGCTTCGCAGACACATGCTGATGGTGCTAGGTTAAGAGAAGGCTGCCATATTAATCTTAGTTTGATGACACTCACAACTGTGATCAGAAAGCTAAGTCAAGGAAAGAGAAGTGGCCATATACCTTACAGAGACTCAAAGCTCACCCGCATATTGCAGCATTCACTTGGTGGAAATGCTCGAACCGCGATTATATGCACACTGAGTCCAGCCCTGACTCATGTTGAACAATCGCGGAACACTTTGTACTTTGCCACCCGGGCGAAGGAAGTGACTAATAACGCCCAAGTTAATATGGTTGTATCGGACAAGCAATTGGTTAAACACTTACAGAAGGAAGTTGCTAGGCTAGAAGCAGAACTGCGCACTCCTGATCCGAAAAGGGAAAAAGATTTAAAAATCCAGCAGATGGAAATGGAGATTGAAGAATTAAAACGACAAAGAGACCTTGCACAATCTCAGGTTGATGAGCTCCGCAGGAAACTTGAGGTGGATCAGCAGGGTTCTAAACCAATTGAACCTGCCCGTCCTCCAGTGAAGAAGTGCTTGTCCTTTACTGGTACATTGCCTCAGAAACTCGATGGCGGCAAGGACCTTGGCCGTGGTATGATATTAAGGCAGTCTATGATGAGACAATCGTCTACCGCTCCTTTCACACTCATGCATGAAATTCGCAAGTTGGAACATCTCCAGGAGCAGCTTGGGAAGGAAGCCAATAAAGCCCTCGAAGTATTACAAAAGGAGGTGGCTTGTCACAGACTGGGGAACCAAGATGCAGCAGAAACTATTGCCAAGCTGCAGGCTGAAATTGGAGAAATGAGATCGGTCCGTTCAGAATCAAAAGAGGTCGAGGTTGGGAGCGTTATTGCTACTAACCAGAGTGTAGGTGCTAATCTTAAGGAAGAGATAACACGGCTTCATTCTCAAGGTAGCACCATTGCAGATCTAGAGGAGCAACTTGAAAATGTTCAGAAGTCCATTGACAAGTTGGTAATGTCTCTACCGAGCAATTATCAGCAGTTAATGAGCAGTGAATCAACCCCCAAACAAAAAAGTTATACCAAAAAGAAGACGTTGCTTCCTTTGGCCTTAAGTAATGTCGCCAACCGGCAAAACTTTTTAAGATCGCCTTGCTCACCTTCAACAACTTCACAGCAAGTACTGGAGTCCGATATCGAAAATAGAGCTCCTGATTATGATGATGTCTTCTCACCTGAGACTCTACTCAAGTCCGAGAAAGAGACTCCAACAAAGTCAAGTGAAGAAGGTGGAGATATCTCCTCAAAGGAGAGCACTCCATGTTATCGAAGATCAAGTTCTGTGAACATGAAGAAGATGCAAAAGATGTTCCAAAATGCAGCAGAAGAAAACGTAAGAAGCATTAGAGCATACGTGACAGAATTGAAAGAGCGTGTGGCTAAACTGCAGTACCAGAAACAGCTACTTGTTTGTCAGGTCCTTGAGCTGGAAGCAAACGAAGCAGCTGGGAACAAATTAGATTGTGATGAGAACACATTTGAGCCGGAGGATGAGCAAGTTCCATGGCATATAACTTTCAGGGAGCAAAGACAGCAGATCATTGAGTTATGGGATGCTTGCTACGTCTCCATTATTCACAGATCTCAATTCTACTTGCTATTCAAGGGCGACCCGGCTGATCAGATCTACCTGGAAGTCGAGATGAGGCGCTTAACATGGCTGGAGGATCACTTAGCAGAAGGTGGCAATGCTAGTCCAGCTCACGCTGGAGACGAGCCATCGATCTCTCGCTCCTCAAGTATGAGGGCGTTGAGACGTGAAAGAGAGTTTCTTGCAAAGAGATTAACCTCACGTTTGACAGCAGAAGAAAGAGATGCGTTGTACATGAAATGGGAAGTACCACTTGAAGGGAAACAGAGGAAAATCCAATTTGTAAACAAGCTTTGGACAAATCCTCACGACCCTAAGCATATTCAACAGAGTGCGGAGATTGTGGCAAAGCTTGTAGGGTTCTGTGAAGGAGGCAACGTGTCCAGAGAGATGTTTGAACTCAATTTTGCTGCTCCATCCGACAAAAGACCATGGATCATGGGATGGAACCAAATTTCAAACCTACTTAATTTGTGA 2889 44.06 MTIKTPATPASKTERTPASTPGGPRSKEEKIVVTVRLRPLNKKEQQAKDQMAWECIDDTTIVYKPQPQERQTQPSSFAFDKVFGPASLTEAVYEEGVKNVALSSLMGINATIFAYGQTSSGKTFTMRGITEKAVNDIYRHISNTPERDFTIRISGLEIYNENVRDLLNTESGRNLKLLDDPEKGTMVEKLVEETANDDRHLRQLISICEAQRQVGETALNDHSSRSHQIIRLTIQSTLRETSDCVRTFVASLNFVDLAGSERASQTHADGARLREGCHINLSLMTLTTVIRKLSQGKRSGHIPYRDSKLTRILQHSLGGNARTAIICTLSPALTHVEQSRNTLYFATRAKEVTNNAQVNMVVSDKQLVKHLQKEVARLEAELRTPDPKREKDLKIQQMEMEIEELKRQRDLAQSQVDELRRKLEVDQQGSKPIEPARPPVKKCLSFTGTLPQKLDGGKDLGRGMILRQSMMRQSSTAPFTLMHEIRKLEHLQEQLGKEANKALEVLQKEVACHRLGNQDAAETIAKLQAEIGEMRSVRSESKEVEVGSVIATNQSVGANLKEEITRLHSQGSTIADLEEQLENVQKSIDKLVMSLPSNYQQLMSSESTPKQKSYTKKKTLLPLALSNVANRQNFLRSPCSPSTTSQQVLESDIENRAPDYDDVFSPETLLKSEKETPTKSSEEGGDISSKESTPCYRRSSSVNMKKMQKMFQNAAEENVRSIRAYVTELKERVAKLQYQKQLLVCQVLELEANEAAGNKLDCDENTFEPEDEQVPWHITFREQRQQIIELWDACYVSIIHRSQFYLLFKGDPADQIYLEVEMRRLTWLEDHLAEGGNASPAHAGDEPSISRSSSMRALRREREFLAKRLTSRLTAEERDALYMKWEVPLEGKQRKIQFVNKLWTNPHDPKHIQQSAEIVAKLVGFCEGGNVSREMFELNFAAPSDKRPWIMGWNQISNLLNL 962
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 240276 245260 + CmoCh18G000400.1 Cmo18g00040 401813

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00040 962 PRINTS Kinesin heavy chain signature 107 128 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmo18g00040 962 PRINTS Kinesin heavy chain signature 217 234 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmo18g00040 962 PRINTS Kinesin heavy chain signature 251 269 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmo18g00040 962 PRINTS Kinesin heavy chain signature 302 323 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmo18g00040 962 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 30 386 IPR027417 -
Cmo18g00040 962 MobiDBLite consensus disorder prediction 1 30 - -
Cmo18g00040 962 MobiDBLite consensus disorder prediction 634 652 - -
Cmo18g00040 962 MobiDBLite consensus disorder prediction 1 20 - -
Cmo18g00040 962 PANTHER KINESIN-LIKE PROTEIN KIN-7A 14 961 - -
Cmo18g00040 962 Coils Coil 567 594 - -
Cmo18g00040 962 ProSitePatterns Kinesin motor domain signature. 250 261 IPR019821 GO:0003777|GO:0005524|GO:0007018
Cmo18g00040 962 Coils Coil 388 422 - -
Cmo18g00040 962 Coils Coil 517 537 - -
Cmo18g00040 962 MobiDBLite consensus disorder prediction 654 686 - -
Cmo18g00040 962 SMART kinesin_4 28 360 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmo18g00040 962 Pfam Domain of unknown function (DUF3490) 780 942 IPR021881 -
Cmo18g00040 962 PANTHER CENTROMERE PROTEIN E 14 961 - -
Cmo18g00040 962 Coils Coil 361 381 - -
Cmo18g00040 962 CDD KISc_CENP_E 30 352 - -
Cmo18g00040 962 Gene3D Kinesin motor domain 23 383 IPR036961 -
Cmo18g00040 962 MobiDBLite consensus disorder prediction 634 699 - -
Cmo18g00040 962 ProSiteProfiles Kinesin motor domain profile. 30 352 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cmo18g00040 962 Pfam Kinesin motor domain 36 352 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00040 K11498 CENPE; centromeric protein E - csv:101215425 1748.02
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo13g01049 Cmo18g00040 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00291 Cmo-Chr5:1257711 Cmo18g00040 Cmo-Chr18:240276 0 dispersed
Cmo18g00040 Cmo-Chr18:240276 Cmo19g00704 Cmo-Chr19:7419246 0 dispersed
Cmo04g01990 Cmo-Chr4:10383844 Cmo18g00040 Cmo-Chr18:240276 0 transposed
Cmo13g01049 Cmo-Chr13:8771988 Cmo18g00040 Cmo-Chr18:240276 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g285 Blo04g00833 Blo16g00131 . . . Bpe13g00360 Bma06g00050 . Cmo13g01049 Cmo18g00040 . . . . . Cpe20g00132 . . . . . . . . . . . . . . . . . . . Lsi02g00207 Csa01g00689 Chy12g01421 Cme12g01857 . . Bda11g01773 . . Bpe15g00531 Bma03g00900 . . . . Cma13g01010 Cma18g00049 Car13g00845 Car18g00043 Cpe09g01132 . Bhi08g01257 . . . . . . Cla04g01075 Cam04g1119 Cec01g1632 Cco01g1678 Clacu04g1145 Cmu04g1126 Cre01g1427 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001397 1 1 3 3 2 2 3 2 2 1 2 2 3 2 2 3 2 2 3 2 2 2 2 3 4 2 1 10 2 2 73
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00040 Cmo_Chr18 FPKM 29.675074 24.608898 44.278984 43.812767 27.531414 45.745293 29.443714 42.71262 49.501904 45.161129