Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00044 ATGGGGAGCCCTGCACTGAATGGCCGGAATAATGGGCAGCGGTTAGGCATTACTGACCCCATTTCGTTGAGTGGACCGACGGAGGACGACGTGATAAAGACTCGCGAACTTGAAAAGTATTTGCAAGATGCTGGATTGTACGAAAGTCAGGAGGAAGCCGTGAGTAGAGAGGAAGTTCTTGGAAGACTAGACCAGGTGCATGGCCCTGGGGCAGACATTGATACACTCTGTGTGGGACCTAGACATGCAACACGTGAAGTGCGGCCAGCTTCCATTTTCCTGAATACTTGTAGTGCATTAATCATATATTCTGAGATGCCTGAAGTATCTGAGTTGCACCCTGTGCCTGATGCTCATGTCCCTGTCATGAAATTTAAGTTTGCCGGGGTTTCTATTGATCTTCTCTATGCGAAATTGTCACTTTGGGTTATTCCTGAAGACTTGGATGTATCTCAGGACTCAATACTACAGAATGCAGATGAACAGACCGTTCGTAGTTTAAATGGTTGTCGCGTTACTGATCGAATTCTGCGATTAGTTCCAAATATTCAGGTTATGGAAGAAAACAAGGCTGATTGGGATACGCTTTTTGAGCCTTACCCCTTCTTCGAAGCATACAAAAACTATTTACAAATAGACATTACTGCTGAAAATGCTGATGATCTAAGAAAGTGGAAAGGCTGGGTTGAATCTCGTCTCCGCCAACTGACATTGAAGCGAAAACAAGGAGTTCCTGCAAGTGGAGGTGAACAGTTTGATATGAGGTTGACAGTTGAGGAATTTAAACATTCTGTCAACATGTATACACTGTGGAAGCCTGGGATGGAGATATATGTATCACATGTGAAAAAGAGGAATATACCAAATTTTGTTTTCCCAGGTGGAGTCCGACCTTCGCGTGCATCAAAAGTGACATGGGATAGCAGGCGTAGTTCAGAACTAAAAGCTTCTGACAGTGCTCAAGTAGACAGGCCATTTGAAGTTGCAGAAAGTATAGATGGAGTAGATGATAGAAGGAAAAGAATGCGTCTTGATGATAATGCAAATACTAACTCGAGAAATGGAGAATGCTTGGCTGTTGTTCATTCCCACCCTGAGGAAGTTCACGAAGTCAGCCAAGTCAGCACCACTAGCTCATGTTCCATTAAGGATTTGAATTCTACTCCTACAAGTGCAAATAACTTAGAAAATCTGGCAGATGTTTCCTCTCAGAATAATGGAGATCATGGATCCATGGAAGTTGATCATTCCACAAACATTGTATCTGCAGCTGCTGATACATCAAGCTGTAAAGAAGCAGAGAAGCTGGCAATTCAAAAGATTCTGTCTGATTCATATGACTCTCATCAAGCTTTGCCTAGTGAGCTAGAAGAGCTCGACGATTTTGATTATAAAAATCAAGCTAAAGATTTTGGGGCCACTAAGCAAGGTAGCCCCTTGATGTCTTCGGTTGCCAACACATCTTCTGTGGTGCCCATGACATCTTGCAATGAAGCACGCCAGTCCTCAAGTTCATATTCCAATGGGGGCTTAGAGGAGCTTGAGCCTGCTGAGCTTGTGGCGCCATCGTCAACGGGGACCGCTCCTGCACCTGTAGCTGCCCGAAAGCCAATTATCAGACTGGAGCACTTGGTCGCGTGCAAGTTGCTTGTTCTTCATCACGAGCTGAGTTCAAGTGGGATGGAAACGAAACATCTTGAATATGTGTTGGTTCCGCTTGGTTTTGCGGTGCTGGTGAGCTACCATCTTTGGTTGGCAGTCACCATCTACTGGAGACCGAAAAGAACAGTCATTGGAATCAACGCCGAATCCCGCCGGCAATGGGTCTCCACCATGATTTCGTCTATTCGATACTATGCTCATGCCAGCTTCTTAGTCACTTTGCCTGCTGGTGAAGGCAGAATGGATTATTTTGCTGGAATCTTGAACCGGGGAAGCTTATTTTGGTCACTCGGACTGCGAGCTTTCTATTTTGCAATTCCTCTCTTCCTCTGGATCCTTGGACCTCTTTCAATGTTCTTGAGTTCCTGCCTTATAACATTTGTGCTTTACTTCTTGGACTTTACTACAACTTCCAGCTATGATCCTTATGAATATCTGCAAAAGGAAGAAGTGAACAACAATGACATTGAATCTGTGGGTCAATCAAGGTCTGTCAAAATCATCCGATGCCTATCTGTTCACCGATCAAACGACGAGGGCACCTCTGCTTCCAACAGCACGAACGACTGCCTGCGAGTCGTCCTCGCCGCCGGAGGCACTGGCGGGCACATTTATCCAGCCATCGCCATTGCTGATGAGCTCAAACTCGCCTTCCCCACATCACAAATCCTCTTTCTAGGAACACCCAACAGCACAGAAAGCGCCGCCGTCCCCTCCGCCGGGTACGAGCTCGAAACGGTTCCGGCTACCAAACTAACTCGCCCCCGTATCTCCCCCCAAAACCTCCTCCTTCCTTTACATCTGATCAAATCCGTGGTTGCGAGTTACAAAAAACTCCACGATTTCAAACCCCACGTTGTCATCGGCACTGGTGGGTACGTCTCGTTCCCGATTTGCCTTGCTGCAAGGCTGATTCATGGGGTCAAGCTCGCAATCCAAGAACAGAACTCGGTTCCAGGATTTGCGAATTGGGTTCTTTCTCATTTTGCAGATGTGGTGTTTGTTGTATTGAACTCCACGGTTGAGTGCTTTCCAAGGAAGAAAAAGTGTTTGGTTTGTGGGAATCCAGTGAGATTGGCATTGAGACAGTATATTTCGAAGGCTGTGGCACGTTTGCATTTCTTTCCAAGATCGGGGAAAGTTGAGGATTTGGAGGCTAAGGTGGTGCTTGTTCTTGGAGGGTCTTTGGGAGCCAATGCCATTAACATAGCCATGCTGAATCTGTACTATCAGATGTTGTTAGAAAACAAGAACTTGTACATCATATGGCAGACTGGCGTGGAAACATTTGATGAAATGGACAGCCTTGTGAAGAACCATTCCCATCTGCATTTAACGCCGTTCATGCATTCTCTGCATTTGGCATATGCAGCTGCAGATCTGATACCCTCACCATATGAAGATGAGGGGCATCAGTTCAGAAATGCTTCAATAATGGCTGACATGGCTGGTTCAACCGTCATCAATGAAGATGAACTAGATTCAACTACGCTTGCGATTGCAATTCAAGAGATATTGGGTGATGAGAGTAAAATGGCAGCTCTGTCCGAGAGAGCATTGAGAGTATCAAAACCAAATGCCGCTGCTGAAATTGTTCAACACATTGGAAACTTAATAAGATGA 3285 45.63 MGSPALNGRNNGQRLGITDPISLSGPTEDDVIKTRELEKYLQDAGLYESQEEAVSREEVLGRLDQVHGPGADIDTLCVGPRHATREVRPASIFLNTCSALIIYSEMPEVSELHPVPDAHVPVMKFKFAGVSIDLLYAKLSLWVIPEDLDVSQDSILQNADEQTVRSLNGCRVTDRILRLVPNIQVMEENKADWDTLFEPYPFFEAYKNYLQIDITAENADDLRKWKGWVESRLRQLTLKRKQGVPASGGEQFDMRLTVEEFKHSVNMYTLWKPGMEIYVSHVKKRNIPNFVFPGGVRPSRASKVTWDSRRSSELKASDSAQVDRPFEVAESIDGVDDRRKRMRLDDNANTNSRNGECLAVVHSHPEEVHEVSQVSTTSSCSIKDLNSTPTSANNLENLADVSSQNNGDHGSMEVDHSTNIVSAAADTSSCKEAEKLAIQKILSDSYDSHQALPSELEELDDFDYKNQAKDFGATKQGSPLMSSVANTSSVVPMTSCNEARQSSSSYSNGGLEELEPAELVAPSSTGTAPAPVAARKPIIRLEHLVACKLLVLHHELSSSGMETKHLEYVLVPLGFAVLVSYHLWLAVTIYWRPKRTVIGINAESRRQWVSTMISSIRYYAHASFLVTLPAGEGRMDYFAGILNRGSLFWSLGLRAFYFAIPLFLWILGPLSMFLSSCLITFVLYFLDFTTTSSYDPYEYLQKEEVNNNDIESVGQSRSVKIIRCLSVHRSNDEGTSASNSTNDCLRVVLAAGGTGGHIYPAIAIADELKLAFPTSQILFLGTPNSTESAAVPSAGYELETVPATKLTRPRISPQNLLLPLHLIKSVVASYKKLHDFKPHVVIGTGGYVSFPICLAARLIHGVKLAIQEQNSVPGFANWVLSHFADVVFVVLNSTVECFPRKKKCLVCGNPVRLALRQYISKAVARLHFFPRSGKVEDLEAKVVLVLGGSLGANAINIAMLNLYYQMLLENKNLYIIWQTGVETFDEMDSLVKNHSHLHLTPFMHSLHLAYAAADLIPSPYEDEGHQFRNASIMADMAGSTVINEDELDSTTLAIAIQEILGDESKMAALSERALRVSKPNAAAEIVQHIGNLIR 1094
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 263137 276750 - CmoCh18G000440.1 Cmo18g00044 401817

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00044 1094 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 746 1092 - -
Cmo18g00044 1094 Gene3D Glycogen Phosphorylase B; 1016 1076 - -
Cmo18g00044 1094 MobiDBLite consensus disorder prediction 1 20 - -
Cmo18g00044 1094 SUPERFAMILY Nucleotidyltransferase 16 179 IPR043519 -
Cmo18g00044 1094 Gene3D Glycogen Phosphorylase B; 745 929 - -
Cmo18g00044 1094 PANTHER POLY A POLYMERASE 1 66 - -
Cmo18g00044 1094 PANTHER POLY A POLYMERASE 236 482 - -
Cmo18g00044 1094 PANTHER POLY A POLYMERASE 203 233 - -
Cmo18g00044 1094 CDD NT_PAP_TUTase 56 180 - -
Cmo18g00044 1094 Hamap UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [murG]. 747 1093 IPR006009 GO:0050511
Cmo18g00044 1094 Gene3D Glycogen Phosphorylase B; 934 1015 - -
Cmo18g00044 1094 Pfam Poly(A) polymerase central domain 16 185 IPR007012 GO:0004652|GO:0043631
Cmo18g00044 1094 MobiDBLite consensus disorder prediction 388 414 - -
Cmo18g00044 1094 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 200 292 IPR011068 GO:0003723|GO:0016779|GO:0031123
Cmo18g00044 1094 CDD GT28_MurG 746 1088 - -
Cmo18g00044 1094 PANTHER POLY(A) POLYMERASE-LIKE PROTEIN 236 482 - -
Cmo18g00044 1094 PANTHER POLY(A) POLYMERASE-LIKE PROTEIN 1 66 - -
Cmo18g00044 1094 PANTHER POLY(A) POLYMERASE-LIKE PROTEIN 203 233 - -
Cmo18g00044 1094 PANTHER POLY(A) POLYMERASE-LIKE PROTEIN 66 186 - -
Cmo18g00044 1094 PANTHER POLY A POLYMERASE 66 186 - -
Cmo18g00044 1094 Pfam Glycosyltransferase family 28 N-terminal domain 747 888 IPR004276 GO:0005975|GO:0016758|GO:0030259
Cmo18g00044 1094 Pfam Protein of unknown function, DUF599 569 613 IPR006747 -
Cmo18g00044 1094 Pfam Protein of unknown function, DUF599 613 690 IPR006747 -
Cmo18g00044 1094 MobiDBLite consensus disorder prediction 1 27 - -
Cmo18g00044 1094 Pfam Glycosyltransferase family 28 C-terminal domain 942 1016 IPR007235 GO:0016758
Cmo18g00044 1094 Gene3D Poly(A) polymerase predicted RNA binding domain 201 244 - -
Cmo18g00044 1094 Pfam Poly(A) polymerase predicted RNA binding domain 202 239 IPR007010 GO:0003723|GO:0043631
Cmo18g00044 1094 Gene3D Beta Polymerase, domain 2 62 174 IPR043519 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00044 K02563 murG; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase [EC:2.4.1.227] - csv:101216864 628.246
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g01043 Cmo-Chr13:8751643 Cmo18g00044 Cmo-Chr18:263137 2.70E-28 dispersed
Cmo17g00729 Cmo-Chr17:7281620 Cmo18g00044 Cmo-Chr18:263137 3.93E-41 dispersed
Cmo18g00044 Cmo-Chr18:263137 Cmo06g00081 Cmo-Chr6:488448 2.84E-08 dispersed
Cmo10g00337 Cmo-Chr10:1513690 Cmo18g00044 Cmo-Chr18:263137 1.06E-12 wgd
Cmo13g01042 Cmo-Chr13:8750119 Cmo18g00044 Cmo-Chr18:263137 2.37E-37 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g276 . . . . . . . . . Cmo18g00044 . . . . . . . . . . . . . . . . . . . . . . . . . . Csa01g00696 . Cme12g01851 . . . . . . . . Sed01g1748 . . . Cma18g00054 . Car18g00048 . . Bhi08g01264 Tan05g2226 Cmetu12g1408 Lac10g0267 Hepe07g2370 . . Cla04g01068 Cam04g1112 Cec01g1626 Cco01g1672 Clacu04g1138 Cmu04g1120 Cre01g1421 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013592 0 1 0 0 0 1 1 1 1 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 1 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00044 Cmo_Chr18 FPKM 119.606934 138.198517 105.049774 100.765686 176.956131 178.684692 182.245346 131.469711 131.489914 136.1642