Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00046 ATGCGGCGTAGCTCCAAGAGACCGGCCGACTTTCTCAAAGACTTGCCTCCTATTCCCAAGTTCAAATTTGACGATCATCCAATGCTTGCCAGAGAGTATGAACGTACACTTCAGAAAGCTCAATGCTTACTACGTCATCAAGTGCTGAGATTGCAACAATTAGCTCAAGAACAGAATGAGAAGATGGAAAAAGTAAACCGCGAAAGAAAATTCCATCAACAAAACGCTGCATCTGAGCTTCATGTTTTGTCCACACAATGGAAGGAACTTTGCCAGAAAAATATTGAAATCCGAGTTGTATCCTCTCAAATAGAGGATCAAATCCAGGATCGAAGGAGAGAGGCAGAAAAAAAAGACTGCGGACATCTTTTGTTACTCTTAGCATATGCCGATATGGAAGATGAGTTCGGTTTATGGGAGAAGATTCAGTTGCTTTTGCTAACCACGTTATTGGTTCATCTTCTTCAAAGTTGCAGCCCTAAAAAGGATGTCCAGAAACATCAAACAGCAACCAAGCAACAACAACATCGTACTCCCAACACTAGAGAACAAATGAACGTCGCACAGATCTCACACCGTTCTAATGAAAACAGATCATGA 600 41.67 MRRSSKRPADFLKDLPPIPKFKFDDHPMLAREYERTLQKAQCLLRHQVLRLQQLAQEQNEKMEKVNRERKFHQQNAASELHVLSTQWKELCQKNIEIRVVSSQIEDQIQDRRREAEKKDCGHLLLLLAYADMEDEFGLWEKIQLLLLTTLLVHLLQSCSPKKDVQKHQTATKQQQHRTPNTREQMNVAQISHRSNENRS 199
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 297080 302740 - CmoCh18G000460.1 Cmo18g00046 401819

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00046 199 PANTHER BCAS2 PROTEIN 1 39 IPR008409 GO:0006397
Cmo18g00046 199 Pfam Breast carcinoma amplified sequence 2 (BCAS2) 44 117 IPR008409 GO:0006397
Cmo18g00046 199 MobiDBLite consensus disorder prediction 162 199 - -
Cmo18g00046 199 Coils Coil 48 75 - -
Cmo18g00046 199 MobiDBLite consensus disorder prediction 171 199 - -
Cmo18g00046 199 PANTHER BCAS2 PROTEIN 44 168 IPR008409 GO:0006397
Cmo18g00046 199 PANTHER PRE-MRNA-SPLICING FACTOR SPF27 1 39 - -
Cmo18g00046 199 PANTHER PRE-MRNA-SPLICING FACTOR SPF27 44 168 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00046 K12861 BCAS2; pre-mRNA-splicing factor SPF27 - csv:101218284 172.17
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo13g01037 Cmo18g00046 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g01037 Cmo-Chr13:8722227 Cmo18g00046 Cmo-Chr18:297080 1.57E-54 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g245 Blo04g00840 . . . . . . . Cmo13g01037 Cmo18g00046 . . . . . Cpe20g00141 . . . . . . . . . . . . . . . Cone2ag0749 . . . Lsi02g00220 Csa01g00702 Chy12g01410 Cme12g01844 . . . . . Bpe15g00522 Bma03g00906 . Sed01g1756 . . Cma13g01001 . Car13g00835 . Cpe09g01123 . Bhi08g01275 Tan05g2212 Cmetu12g2133 Lac10g0275 Hepe07g2366 . . Cla04g01061 Cam04g1104 Cec01g1618 Cco01g1665 Clacu04g1128 Cmu04g1112 Cre01g1414 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018626 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00046 Cmo_Chr18 FPKM 1.653226 2.443964 0.247842 0.0 0.221232 0.152052 0.070914 0.371639 0.162679 0.171395