Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00049 ATGGATCGCGCCAGTAAGGGCGAGAAGCACTCAGAATTTTTCACAGAGTATGGAGAAGGAAGCCGATACCATATTCAGGAAGTGATTGGGAAAGGAAGCTACGGAATTGTTGGTTCTGCAATTGACACCCAAACTGGTGAAAGGGTTGCTATCAAGAAAATTCATGATGTTTTTGAGCATGTATCTGATGCCATACGCATCCTAAGAGAAATTAAGCTCCTCCGGATGCTCCATCATCCGAACATTGTAGAGATAAAACATATCATGCTTCCCCCCTCACAGCGAGAATTTAAAGATATTTATCTTGTTTTTGAGTTGATGAAGACTGATCTTCACCACGTAATTAAGGAAAATAATGATCTTTCTGCCAAGCAGCATAAATTTTTCTTGTACCAGCTTCTTAGTGGCCTAAAATATATACATGCCGCAAATGTTCTTCATCGAGATTTGAAGCCAAAAAACATACTTGCTAATACTGACTGCAGACTGAAGATATGTGATTTTGGACTAGCTCGAGTATCTTTTAGTGACGCGCCATCTACTATTTTCTGGACAGATTATGTTGCAACTCGCTGGTATCGGGCTCCCGAACTCTGTGGATCATTTTTCTCGAGATATACCCCTGCTATAGATATTTGGAGTATCGGATGCATATTTGCAGAAATGCTTTCGGGAAAACCTTTGTTTCCTGGAAAAAATGTGGCTCACCAGTTAGATTTAATTACCGATCTGTTTGGAACTCCTGATGCTGAATCCGTAGCGAAGATTCGGAATGAAAAGGCAAGAAGGTACCTGGGAAACATGCGTAAGAAAACACCAGTTCCATTCTCACGAAAGTTTCCTAATGCCGACCCATTGGCACTCCGTTTACTGGAACGCCTCCTGGCATTTGATCCCAAACGTCGTCTAACTGCTGCAGAGGCACTTACGGATTCCTACTTCAATGATATGACGAAAGCAGAAATTGAACCTTCTATTCAACCAATTTCAAAGCTTGAGTTTGACTTTGAGAGAAAGAGATTAACAAAAGATGATGTTAGAGAGTTAATTTATGCAGAGATTTTAGAGTATCATCCCGAAATGCGTCAGGAGGGCCTACACGATGGAGGTCAATCTACCTTTATCTATCCAAGTGGTGTTGATCGATTTAAACTTCAGTTTGCGCATCTGGAAGAGAACTTCAGTAAAGGTCAAAGAAGTGCTCCACTTCAAAGGCAGAACGTTTCCTTACCTCGGGAGCGGGTTACTCCACCTGAGCACAAGAACGCAGAGCATAACAATGAATTTGGAAGGGGGGAAGAGAAGAGTGCCCACCTCTTCAAAAGTGCTAGCATTAGTGCATCGAGGTGTGTAGGGGTAATACCGAAGGAGAAGTCTGAGGAGGAAGAAACGAGTTCTGAGGTGAAAAGTGAAGCAGTTGATGAATCGACTCAAAAGATTGCAGTCCTTCAGAGTTGA 1458 42.25 MDRASKGEKHSEFFTEYGEGSRYHIQEVIGKGSYGIVGSAIDTQTGERVAIKKIHDVFEHVSDAIRILREIKLLRMLHHPNIVEIKHIMLPPSQREFKDIYLVFELMKTDLHHVIKENNDLSAKQHKFFLYQLLSGLKYIHAANVLHRDLKPKNILANTDCRLKICDFGLARVSFSDAPSTIFWTDYVATRWYRAPELCGSFFSRYTPAIDIWSIGCIFAEMLSGKPLFPGKNVAHQLDLITDLFGTPDAESVAKIRNEKARRYLGNMRKKTPVPFSRKFPNADPLALRLLERLLAFDPKRRLTAAEALTDSYFNDMTKAEIEPSIQPISKLEFDFERKRLTKDDVRELIYAEILEYHPEMRQEGLHDGGQSTFIYPSGVDRFKLQFAHLEENFSKGQRSAPLQRQNVSLPRERVTPPEHKNAEHNNEFGRGEEKSAHLFKSASISASRCVGVIPKEKSEEEETSSEVKSEAVDESTQKIAVLQS 485
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 316757 322380 - CmoCh18G000490.1 Cmo18g00049 401822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00049 485 Gene3D Phosphorylase Kinase; domain 1 39 360 - -
Cmo18g00049 485 SUPERFAMILY Protein kinase-like (PK-like) 20 319 IPR011009 -
Cmo18g00049 485 MobiDBLite consensus disorder prediction 397 411 - -
Cmo18g00049 485 MobiDBLite consensus disorder prediction 414 437 - -
Cmo18g00049 485 SMART serkin_6 23 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00049 485 CDD STKc_TDY_MAPK 22 359 - -
Cmo18g00049 485 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 8 436 - -
Cmo18g00049 485 MobiDBLite consensus disorder prediction 454 474 - -
Cmo18g00049 485 Pfam Protein kinase domain 23 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00049 485 MobiDBLite consensus disorder prediction 454 485 - -
Cmo18g00049 485 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 8 436 - -
Cmo18g00049 485 MobiDBLite consensus disorder prediction 396 437 - -
Cmo18g00049 485 ProSiteProfiles Protein kinase domain profile. 23 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00049 485 ProSitePatterns MAP kinase signature. 58 161 IPR003527 GO:0004707|GO:0005524|GO:0006468
Cmo18g00049 485 Gene3D Transferase(Phosphotransferase) domain 1 109 337 - -
Cmo18g00049 485 ProSitePatterns Protein kinases ATP-binding region signature. 29 53 IPR017441 GO:0005524
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g00311 Cmo18g00049 CCT
Cmo10g00349 Cmo18g00049 CCT
Cmo11g00311 Cmo18g00049 ECH
Cmo10g00349 Cmo18g00049 ECH
Cmo13g01034 Cmo18g00049 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00666 Cmo-Chr11:3203763 Cmo18g00049 Cmo-Chr18:316757 2.01E-09 dispersed
Cmo18g00049 Cmo-Chr18:316757 Cmo19g01097 Cmo-Chr19:9403201 0 dispersed
Cmo10g00349 Cmo-Chr10:1579520 Cmo18g00049 Cmo-Chr18:316757 0 wgd
Cmo13g01034 Cmo-Chr13:8708506 Cmo18g00049 Cmo-Chr18:316757 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75029 PF00069 Pkinase 6.50E-68 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00049 - - bhj:120082540 802.742