Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00050 ATGAAGAACCTTCTCAAGAAGTTCCATATCATGTCCAGTGGTCAGTCAGAGGATAAAGCAGAAGGGTCTACTTCATCAAGGCGCAGTAAATTAATTGAGGTTTCATCGTCTGATAAGCTGCTATCTCGCTCTCGACCGACCTATTTTAATTCTGAGCATGAACCCTTCTCGGGGATATCCGGTTGGTTGAACTCTGTTACAAACAGGCGTTGCACCAGCCCGACATCATCTTCGGATCCTACTGCAGGGGAGATAATGGAGCCATCTGTTTCAATGTCTAGCAGAGAGGCTGCAGTGGATACATCAAGGCGTGATTCGAGGTTGAGTAATTCGAGGGATCATGATATAGAGGAAGAGAATCAGATACAGCTTGCTTTGGAAATGAGTGCCAGAGAGGATCCTGAGGCGGCTCAGATTGAGGCTGTGAAGCAGATCAGTTTGGGGTCGTGTGATCCTGCTAACACTCCAGCTGAAGTTATTGCCTTTAGATATTGGAATTACAATTCTCTTAGCTATGATGACAAGATCTTGGATGGCTTTTACGACCTATATGGAGTCTTTTCTGATTCCACCTCAGAAAGAATGCCTTCCCTAGTTGATCTGCAAGGAGCACCAATGTCTGACAGTGTCACTTGGGAAGCAGTTCTGATCAACAAAGCTGCTGATGCAAACTTACTAAAACTAGGACAGACAGCATTGGAGATTGCCATCAAGACGAGGTCGGAATCTCCAATTTCTGTAAATCGTTATTTGGTGCGGAAGCTTGCTGTTTTAGTTTCAGATCATATGGGTGGACCAGTGGGGGATCCTGAAAAGATGTTGAGGAAATGGAGAAATCTTAGTTACAGCTTGAAAGCAACCCTTGGTAGTATGGTTTTTCCTCTTGGCTCCCTTACCGTTGGGATGGCTCGTCATCGTGCATTGCTATTCAAGCTTTTGGCAGACGGTGTGGACATCCCTTGTAGGTTGGTGAAAGGACCACAGTACACAGGTTCTGATGATGTAGCAATGAACTTCGTAAAGATTGATGATGGAAGGGAGTACATTGTGGATTTAATGGCAGATCCTGGTACACTTATTCCGGCTGATGTTGCTCGATCGCTTATAGAGTATGATGAATCCGCCTTTTCAGTCGGTCTGCTTTCTAGAGATGTTGGTTCCTCTCAGACTGGCTTTTCAAGCTGTGGGGTTGGCAGTTCATTAGAGGAAAATCTAGATTTTGGTGCCACAAAGGAATATGATCCTCCCAATGTTGACAAGGGGCTACCACACGATTTTGCTAGCAAACCAAATTATCCTGGCATGCACGTAAGATCACCTTCTTGGACTGAGGGTGTTAGCTCGCCTGCAGTGCGCAGAATGAAAGTAAAGGATGTTTCGCAATACATGATTGATGCTGCCAAAGAGAATCCGCGATTGGCTCAGAAGCTTCATGATGTGTTGCTTGAAAGCGGTGTAGTTGCACCCCCGAACTTGTTTACCGGGGTATATCCCGACCAAATAGATGTTATTGTCGGGTCAAAGCCGCCAACTGAAGACAAGGATCAAGGTGGAAAGGTGTCTCGTCTCTGCAACAGTGCAGATAAGAAAGCTTCTCATTCAGCTAATTTTTTGCCTCCTTTGCCTCAGCCCAGACTACTTTCTAAAGCAAGCCCTACCCATGGCCAACAACAGCATCTTAAACCTCTGGAGCGCAACCTCTCTCATGATTCAAGAGAAGCACCTGGACAGCCTATAGCCTTGCCATTTGAGGTAATTCCAGTGAAGTACGGGAGAAATAGGCCTGTGGCTGCAGCAGCAGCAGCTACTGCAGCTGTTGTTGCATCATCAATGGTCGTAGCTGCAGCCAAGAGTACCGAGGCAAATCTTGAAATTCCTGTATCTGCTGCTGCCACTGCCACTGCTGCTGCAGTGGTTGCAACAACTGCAGCAGTCAACAAGCAGTATGAGCAGGTTGAGGCTGATGCCGCTCTTTATTTGCAGCACGGAAGTGGAGATCGGGAGCAGGACGCTTATGGAGAAAATTCAGAGTGTGAACGAATATCTGATAGATCAGCAGGGAATGAAAGCACAAAATCTGATATTACCATTGACGACGTAGCAGAATGCGAGATCCCATGGGAAGATATCTCCTTGGGAGAGCGTATTGGACTTGGGTCTTATGGGGAGGTCTATCATGGAGATTGGCATGGAACTGAGGTAGCTGTGAAGAGGTTTCTAGACCAGGATATTTCTGGTGAATCTCTTGAAGATCTCAAAAGTGAGGTACGAATTATGAAACGGCTTCGGCATCCAAACGTTGTTCTCTTCATGGGAGCCGTGACACGTGCTCCCAATCTTTCTATCGTTACAGAATTTCTTCCCAGAGGTAGCTTGTACAGGTTAATACACCGTCCCAACAATCAATTAGACGAGCAAAAGCGATTAAGAATGGCCCTTGATGCAGCTCGAGGAATGAATTATTTGCACAATTGCACCCCCGTTGTTGTACACCGTGATTTGAAGTCTCCAAATCTTCTTGTTGATCGGAATCGGGTTGTGAAGGTATGCGATTTTGGTTTATCAAAAATGAAGCACAGCACGTTTCTTTCTTCAAGGTCGACAGCGGGAACAGCTGAGTGGATGGCTCCAGAAGTGTTGAGAAATGAACCTTCAGATGAAAAGTGTGACGTTTATAGTTACGGAGTCATACTATGGGAACTTTCTACAATGAAACAGCCATGGGGAGGAATGAACCCGATGCAAGTTGTTGGCGCCGTTGGCTTTCAGCATCGCCGTCTTGACATCCCAGACAATATAGATCCTGCCATTGCTGACATTATTAGGAAATGCTGGCAAACAGATCCAAGATTAAGGCCTTCATTTGCCGAGATCTTGGCTGCACTAAAGCCACTGCAGAAGCCAATGTTGAGTTCTCAAGTACCGAGACGGAATGCTTCTGCAGGCAGTGGTCGATCGAAGGCTCGATTATTGCAAGTTGCTGAAGACCCATTAGGATAA 3000 46.1 MKNLLKKFHIMSSGQSEDKAEGSTSSRRSKLIEVSSSDKLLSRSRPTYFNSEHEPFSGISGWLNSVTNRRCTSPTSSSDPTAGEIMEPSVSMSSREAAVDTSRRDSRLSNSRDHDIEEENQIQLALEMSAREDPEAAQIEAVKQISLGSCDPANTPAEVIAFRYWNYNSLSYDDKILDGFYDLYGVFSDSTSERMPSLVDLQGAPMSDSVTWEAVLINKAADANLLKLGQTALEIAIKTRSESPISVNRYLVRKLAVLVSDHMGGPVGDPEKMLRKWRNLSYSLKATLGSMVFPLGSLTVGMARHRALLFKLLADGVDIPCRLVKGPQYTGSDDVAMNFVKIDDGREYIVDLMADPGTLIPADVARSLIEYDESAFSVGLLSRDVGSSQTGFSSCGVGSSLEENLDFGATKEYDPPNVDKGLPHDFASKPNYPGMHVRSPSWTEGVSSPAVRRMKVKDVSQYMIDAAKENPRLAQKLHDVLLESGVVAPPNLFTGVYPDQIDVIVGSKPPTEDKDQGGKVSRLCNSADKKASHSANFLPPLPQPRLLSKASPTHGQQQHLKPLERNLSHDSREAPGQPIALPFEVIPVKYGRNRPVAAAAAATAAVVASSMVVAAAKSTEANLEIPVSAAATATAAAVVATTAAVNKQYEQVEADAALYLQHGSGDREQDAYGENSECERISDRSAGNESTKSDITIDDVAECEIPWEDISLGERIGLGSYGEVYHGDWHGTEVAVKRFLDQDISGESLEDLKSEVRIMKRLRHPNVVLFMGAVTRAPNLSIVTEFLPRGSLYRLIHRPNNQLDEQKRLRMALDAARGMNYLHNCTPVVVHRDLKSPNLLVDRNRVVKVCDFGLSKMKHSTFLSSRSTAGTAEWMAPEVLRNEPSDEKCDVYSYGVILWELSTMKQPWGGMNPMQVVGAVGFQHRRLDIPDNIDPAIADIIRKCWQTDPRLRPSFAEILAALKPLQKPMLSSQVPRRNASAGSGRSKARLLQVAEDPLG 999
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 323440 332879 + CmoCh18G000500.1 Cmo18g00050 401823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00050 999 MobiDBLite consensus disorder prediction 70 117 - -
Cmo18g00050 999 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 117 136 IPR003903 -
Cmo18g00050 999 ProSiteProfiles Protein kinase domain profile. 710 970 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00050 999 Pfam Protein tyrosine and serine/threonine kinase 711 961 IPR001245 GO:0004672|GO:0006468
Cmo18g00050 999 MobiDBLite consensus disorder prediction 666 693 - -
Cmo18g00050 999 SUPERFAMILY Protein kinase-like (PK-like) 692 961 IPR011009 -
Cmo18g00050 999 CDD STKc_MAP3K-like 716 962 - -
Cmo18g00050 999 ProSitePatterns Protein kinases ATP-binding region signature. 716 737 IPR017441 GO:0005524
Cmo18g00050 999 Gene3D Phosphorylase Kinase; domain 1 703 787 - -
Cmo18g00050 999 MobiDBLite consensus disorder prediction 10 39 - -
Cmo18g00050 999 SMART serkin_6 710 970 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00050 999 PRINTS Tyrosine kinase catalytic domain signature 784 797 IPR001245 GO:0004672|GO:0006468
Cmo18g00050 999 PRINTS Tyrosine kinase catalytic domain signature 823 841 IPR001245 GO:0004672|GO:0006468
Cmo18g00050 999 PRINTS Tyrosine kinase catalytic domain signature 870 880 IPR001245 GO:0004672|GO:0006468
Cmo18g00050 999 PRINTS Tyrosine kinase catalytic domain signature 889 911 IPR001245 GO:0004672|GO:0006468
Cmo18g00050 999 PRINTS Tyrosine kinase catalytic domain signature 933 955 IPR001245 GO:0004672|GO:0006468
Cmo18g00050 999 Pfam Ethylene-responsive protein kinase Le-CTR1 157 360 - -
Cmo18g00050 999 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 1 997 - -
Cmo18g00050 999 MobiDBLite consensus disorder prediction 667 687 - -
Cmo18g00050 999 MobiDBLite consensus disorder prediction 70 88 - -
Cmo18g00050 999 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 1 997 - -
Cmo18g00050 999 MobiDBLite consensus disorder prediction 98 117 - -
Cmo18g00050 999 MobiDBLite consensus disorder prediction 531 560 - -
Cmo18g00050 999 ProSitePatterns Serine/Threonine protein kinases active-site signature. 829 841 IPR008271 GO:0004672|GO:0006468
Cmo18g00050 999 Gene3D Transferase(Phosphotransferase) domain 1 789 973 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo13g01032 Cmo18g00050 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g01773 Cmo-Chr1:13120602 Cmo18g00050 Cmo-Chr18:323440 1.07E-80 dispersed
Cmo11g01013 Cmo-Chr11:5497639 Cmo18g00050 Cmo-Chr18:323440 1.50E-59 dispersed
Cmo13g01032 Cmo-Chr13:8690749 Cmo18g00050 Cmo-Chr18:323440 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75030 PF07714 PK_Tyr_Ser-Thr 3.60E-67 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00050 - - csv:101209024 1664.82