Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00052 ATGGCAACTGTGCTCGACTCCCGTTTCTTGGCGCTTACTGCCATTGTCACTATTGGATATCAACTATTGTTCTTTATAGTCACAGCTCTTCTCAAGTTCGACAAAGTCACTGATTTTGCTGGCAGCACAAATTTTGTGATAATTGCTGTTTTGACGCTAGTTCTTAAGGGTAGCTGGCATTTTAGACAGGTTGTTCTGTCATTTCTTGTGGTGGCATGGGGTCTTCGTCTTGGTTTTTTCCTGCTAATGAGGATTTTGCAATGGGGAGAGGACCGGCGTTTTGATGAAATGCGTAGTAATTTGGGGAAATTAGCAGTTTTCTGGATATTTCAGGCTGTTTGGGTCTGGACCGTGAGTTTACCTGTCACAGTGGTCAATGGAAGCAATCACAATCCACCTCTCCAAGCTGCGGATGTAATTGGGTGGATTATGTGGTTAGTGGGTGTTGTATTCGAAGCTACAGCTGATCAACAAAAGCTGACATTTAAAAACAATCCAGAAAATAGGGGGAAGTGGTGCAATGTTGGACTTTGGAAGGTCACTCGTCATCCTAATTACTTTGGTGAGATCTTTCTTTGGTGGGGAATCTTCGTTGCTTCCACACCCGTTCTGGAAGGTGCTGAGTGGCTTGTGATACTTGGGCCAATTTTCCTCACATTGTTGCTTCTCTTCGTCAGTGGGATCCCTCTCCTCGAGGAATCAGCAGATAAGAAGTTCGGAAATGTGACTGAATATGTACAGTATAAAAGAAAGACCAGCCCCCTCATCCCACTGCCTACCGCAATATACGCAAATCTGCCCTCGTGGTTCAAGAAAATTTTTCTATTTGAATTTCCGTTTTACAGCCGCAATCTTCCCCGGGATGGGCTAAACTGGTGA 879 44.48 MATVLDSRFLALTAIVTIGYQLLFFIVTALLKFDKVTDFAGSTNFVIIAVLTLVLKGSWHFRQVVLSFLVVAWGLRLGFFLLMRILQWGEDRRFDEMRSNLGKLAVFWIFQAVWVWTVSLPVTVVNGSNHNPPLQAADVIGWIMWLVGVVFEATADQQKLTFKNNPENRGKWCNVGLWKVTRHPNYFGEIFLWWGIFVASTPVLEGAEWLVILGPIFLTLLLLFVSGIPLLEESADKKFGNVTEYVQYKRKTSPLIPLPTAIYANLPSWFKKIFLFEFPFYSRNLPRDGLNW 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 335956 340552 + CmoCh18G000520.1 Cmo18g00052 401825

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00052 292 Gene3D - 58 258 - -
Cmo18g00052 292 ProSiteProfiles Steroid 5-alpha reductase C-terminal domain profile. 141 209 IPR001104 GO:0006629|GO:0016627
Cmo18g00052 292 PANTHER - 5 292 - -
Cmo18g00052 292 Pfam Protein of unknown function (DUF1295) 24 252 IPR010721 -
Cmo18g00052 292 PANTHER 3-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE 5 292 IPR010721 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00052 - - - bhj:120083299 539.65
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo13g01031 Cmo18g00052 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00962 Cmo-Chr6:7525929 Cmo18g00052 Cmo-Chr18:335956 1.01E-14 transposed
Cmo13g01031 Cmo-Chr13:8686443 Cmo18g00052 Cmo-Chr18:335956 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g219 . . . . . . . . Cmo13g01031 Cmo18g00052 . . . . . Cpe20g00147 . . . . . . . . . . . . . . . . . . . Lsi02g00227 Csa01g00709 Chy12g01402 Cme12g01835 . . . . . Bpe15g00511 . . Sed08g2753 . . Cma13g00996 Cma18g00069 Car13g00829 Car18g00060 Cpe09g01117 . Bhi08g01287 Tan05g2197 . Lac10g0285 Hepe07g2358 . . Cla04g01052 Cam04g1095 Cec01g1610 Cco01g1656 Clacu04g1121 Cmu04g1105 Cre01g1404 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006383 1 3 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00052 Cmo_Chr18 FPKM 13.706863 17.523312 6.782051 6.576362 20.999195 18.746429 18.947229 1.395283 1.144001 1.167112