Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00054 ATGAACATGTGGATGATGGGTTACAATGACGGCGGAGATTTGAACTTTTCTTCCGATTCATTCAATGCCCGGAAACTTCGACCGCTCATTCCTCGCCCTCTCTCTTCTCCCTCCACCAACGATTTCTTCTCTCAATTTTATCAAATGGGGACTGATCAGAGCAAGAGAGAGTTGAATAATGCACCACCGCCGCCGGTCGTCGTAAGCTCGCGGTGGAATCCGACGCCGGAGCAGTTGAGATTACTGGAGGAATTGTACCGCCGGGGGACTCGAACACCATCCGCCGAACAGATTCAACATATCACCGCTCAGCTCCGCCGTTTTGGGAAGATCGAAGGGAAGAACGTGTTCTATTGGTTTCAGAATCACAAAGCTAGAGAGCGGCAGAAACGCCGCCGTCAGATGGAATCTTCCGACCAGTCGATTTGCGACATTGAAATCCTCGAACGGAAAGATTCAGGGTCGGGTAGGACAGTCTATGAAGTTGAACACACCAAGAACTGGCCTACCTCTACAAACTGCCGTACACTTGTGGAGGAATCTCTTCCAATCCCACGCGCGCCAAAAGATAGCACCATGACACAAAATGGAAGCCTCCATTCTACGGCGGCCACTCCCGGCGGTGTCGGTGTCGGTGGCATTGGAGGCTGCAGGCAACTGATGATGAACACCGCCCCCATCGCCGCTACCACCACAACCGCGACAGTTACAACAATAATGCACCAAGATGATGGGGTTGAAGGATTAGAAGAATCAGAAACCCTACAACTATTTCCATTGTGCAGTGAGACAAGAAATGGTGGGTGTGAAACAGTGGGAAGCTCAGGGATGAACAGTGCTAATGTGATGACTCCACTTCAGTTCTTTGAATTCCTTCCATTGAAGAATTGA 891 50.28 MNMWMMGYNDGGDLNFSSDSFNARKLRPLIPRPLSSPSTNDFFSQFYQMGTDQSKRELNNAPPPPVVVSSRWNPTPEQLRLLEELYRRGTRTPSAEQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQMESSDQSICDIEILERKDSGSGRTVYEVEHTKNWPTSTNCRTLVEESLPIPRAPKDSTMTQNGSLHSTAATPGGVGVGGIGGCRQLMMNTAPIAATTTTATVTTIMHQDDGVEGLEESETLQLFPLCSETRNGGCETVGSSGMNSANVMTPLQFFEFLPLKN 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 346478 349433 - CmoCh18G000540.1 Cmo18g00054 401827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00054 296 SUPERFAMILY Homeodomain-like 69 135 IPR009057 -
Cmo18g00054 296 CDD homeodomain 71 131 IPR001356 GO:0003677
Cmo18g00054 296 Gene3D - 68 130 - -
Cmo18g00054 296 MobiDBLite consensus disorder prediction 188 203 - -
Cmo18g00054 296 ProSiteProfiles 'Homeobox' domain profile. 75 130 IPR001356 GO:0003677
Cmo18g00054 296 Pfam Homeodomain 70 129 IPR001356 GO:0003677
Cmo18g00054 296 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 33 296 IPR044555 GO:0003700|GO:0099402
Cmo18g00054 296 SMART HOX_1 67 134 IPR001356 GO:0003677
Cmo18g00054 296 MobiDBLite consensus disorder prediction 185 204 - -
Cmo18g00054 296 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 33 296 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g00316 Cmo18g00054 CCT
Cmo11g00316 Cmo18g00054 ECH
Cmo13g01029 Cmo18g00054 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00316 Cmo-Chr11:1528835 Cmo18g00054 Cmo-Chr18:346478 1.16E-58 dispersed
Cmo15g00135 Cmo-Chr15:633045 Cmo18g00054 Cmo-Chr18:346478 2.65E-27 dispersed
Cmo18g00054 Cmo-Chr18:346478 Cmo20g00484 Cmo-Chr20:2262359 9.38E-29 dispersed
Cmo13g01029 Cmo-Chr13:8676452 Cmo18g00054 Cmo-Chr18:346478 1.08E-119 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11465 PF00046 Homeodomain 2.20E-19 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00054 - - cmax:111490342 524.628