Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00058 ATGCAACTGAAAGCTCGTAGACTTCAGGTCATTTTTCTAATTCTATGTCTATGCTCTCTTTTCATCAATGCTCGTCCATATCTCATCGTCATCTCTCAAGATGACCTCAAGGATGGTGCACTCGCCGACGACTTCCCCGATTCCGCCGAGTGGGATGAATTTGGGGAACCTGAATCTCAAAACTCCAGCGAGGAGCTCGACCCTGGCTCTTGGCGCCCTATATTCGAACCGGATTCCCCTTCCTCCGCCTCCGACGCGCCGGAGGATCTGTACTACACTGCTTTAGGGAAATTTATGTCGTCGGTGAGTTCCGGTGACTTAAGGTTGATGGAGGAGGCGGTTGCGGACATTGATCAAGTTGCTGCGGGGAGTGGGGATCCGCACGCGCAATCGGTGCTAGGGTTACTACATGGAATGGGGATAATGAAGGAGACGAACAAGGCTAAGGCGTTTATGTATCATTACTTTGCCGCTGAAGGGAATAAGCAATCTAAGATGGCTCTTGCGTATATTTACTTCAGGCAAGAAATGTATGAGAAAGCAGTCAAGCTTTATGCTGACTTAGCAGAGGTAGCTATTAACAGTTTATTAGTTTCTAAGGACTCTCCAGTGATTGAACCTGTGAGGATCCATAATGGGGCTGAGGAGAACAAGCAAGCCTTGAGAAAGTCTAGAGGAGAGGAGGACGAAGACTTCCAAATTTTGGAGTATCAGGCGCAGAAGGGTAATGCTGGAGCTATGTATAGAATTGGACTATTTTACTATTTTGGACTGAGAGGGTTGAGGCGTGATCATGCCAAGGCACTGTCCTGGTTTTCCAAGGCTGTGGAGAAAGGTGAACCAAGGTCTATGGAACTAGTTGGAGAGATATATGCAAGGGGTGCCGGAGTTGAGAGGGATTACACTAAGGCACTTCAATGGCTAACTCGTGCGTCCAAGCAGCCATCATTTTCTGCTTATAATGGCATGGGGTATTTGTACGTCAAGGGCTATGGAGTGGAGAAAAACTTTACCAAGGCCAAGGAGTACTTTGAGAAAGCTGCCAATAACGACGAGTCTGGTGGTCATTATAATCTAGGAGTTATGTATCTTAAAGGAATTGGAGTAAAGAGAGATGTGAAGAAGGCATGTACTCATTTTATAGTGGCTGCTAATGCTGGACAACCAAAGGCATTCTATCAGCTGGCAAAGATGTTTCATACTGGTGTTGGGCTCAAGAGGAATATTCCTATGGCAAGTGCACTGTACAAATTAGTTGCTGAACGAGGACCTTGGAGTTCATTGTCTAGATGGGCATTGGAATCGTATCTGAAAGCTGACATTCGCAAGGCTTTCTTCTTGTATACAAGAATGGCAGAGCTAGGATACGAGGTGGCACAAAGCAATGCAGCATGGATACTTGACAAATATGGAGAACAAAGCATGTGTCTGGGGGAATCTGGCTTTTGTGCCAAGGCAGAAAGACATCAAAGAGCTCATTCTCTTTGGTGGCAAGCATCCGAGCAGGGCAACGAACATGCCGCCTTACTGATTGGGGATGCATATTACTACGGTCGGGGCACTGACGTAGATTATGATCGAGCTGCGGAAGCATACATGCATGCCAAATCCCAGCTAAATGCACAAGCCATGTTCAACCTTGGTTACATGCATGAACATGGTCTAGGCCTTCCGTTTGACCTTCACCTAGCCAAGCGTTACTATGATCAAGCTCTGGAACTTGATCCAGCTGCTAGGTTGCCAGTCAAGTTGGCTCTAGGAAGCCTGTGGTTACGAAAGAATCATGCGGACTGTTTTCTGGTCCATGTGATTGATTCGTTGCCAGAAGTTTATCCAAAAATTGATGCATGGGTGGAGGATGTACTGTTGGAGGAAGGAAATGCAACAATTCTAACTCTATTTGCCTGCCTCCTCACTGTCCTATATCTTAGAGAGCGACAAAGGAGGCACGCAGCTGTTCGTGCTGCTGCGGTGGCTGTGCCACTCCACCCCAATGACCACGCGGTGGCTGCACAAAATTAA 2022 47.03 MQLKARRLQVIFLILCLCSLFINARPYLIVISQDDLKDGALADDFPDSAEWDEFGEPESQNSSEELDPGSWRPIFEPDSPSSASDAPEDLYYTALGKFMSSVSSGDLRLMEEAVADIDQVAAGSGDPHAQSVLGLLHGMGIMKETNKAKAFMYHYFAAEGNKQSKMALAYIYFRQEMYEKAVKLYADLAEVAINSLLVSKDSPVIEPVRIHNGAEENKQALRKSRGEEDEDFQILEYQAQKGNAGAMYRIGLFYYFGLRGLRRDHAKALSWFSKAVEKGEPRSMELVGEIYARGAGVERDYTKALQWLTRASKQPSFSAYNGMGYLYVKGYGVEKNFTKAKEYFEKAANNDESGGHYNLGVMYLKGIGVKRDVKKACTHFIVAANAGQPKAFYQLAKMFHTGVGLKRNIPMASALYKLVAERGPWSSLSRWALESYLKADIRKAFFLYTRMAELGYEVAQSNAAWILDKYGEQSMCLGESGFCAKAERHQRAHSLWWQASEQGNEHAALLIGDAYYYGRGTDVDYDRAAEAYMHAKSQLNAQAMFNLGYMHEHGLGLPFDLHLAKRYYDQALELDPAARLPVKLALGSLWLRKNHADCFLVHVIDSLPEVYPKIDAWVEDVLLEEGNATILTLFACLLTVLYLRERQRRHAAVRAAAVAVPLHPNDHAVAAQN 673
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 376736 380272 - CmoCh18G000580.1 Cmo18g00058 401831

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00058 673 SUPERFAMILY HCP-like 225 351 - -
Cmo18g00058 673 SUPERFAMILY HCP-like 110 190 - -
Cmo18g00058 673 SMART sel1 389 424 IPR006597 -
Cmo18g00058 673 SMART sel1 505 540 IPR006597 -
Cmo18g00058 673 SMART sel1 317 352 IPR006597 -
Cmo18g00058 673 SMART sel1 541 576 IPR006597 -
Cmo18g00058 673 SMART sel1 244 280 IPR006597 -
Cmo18g00058 673 SMART sel1 127 162 IPR006597 -
Cmo18g00058 673 SMART sel1 353 388 IPR006597 -
Cmo18g00058 673 SMART sel1 281 316 IPR006597 -
Cmo18g00058 673 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATED 4 656 IPR044623 GO:0030433
Cmo18g00058 673 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATED 4 656 - -
Cmo18g00058 673 Pfam Sel1 repeat 245 279 IPR006597 -
Cmo18g00058 673 Pfam Sel1 repeat 393 423 IPR006597 -
Cmo18g00058 673 Pfam Sel1 repeat 356 387 IPR006597 -
Cmo18g00058 673 Pfam Sel1 repeat 437 456 IPR006597 -
Cmo18g00058 673 Pfam Sel1 repeat 282 315 IPR006597 -
Cmo18g00058 673 Pfam Sel1 repeat 507 529 IPR006597 -
Cmo18g00058 673 Pfam Sel1 repeat 318 351 IPR006597 -
Cmo18g00058 673 Pfam Sel1 repeat 127 160 IPR006597 -
Cmo18g00058 673 Pfam Sel1 repeat 541 575 IPR006597 -
Cmo18g00058 673 SUPERFAMILY HCP-like 330 464 - -
Cmo18g00058 673 SUPERFAMILY HCP-like 436 577 - -
Cmo18g00058 673 Gene3D Tetratricopeptide repeat domain 107 206 IPR011990 GO:0005515
Cmo18g00058 673 Gene3D Tetratricopeptide repeat domain 209 588 IPR011990 GO:0005515
Cmo18g00058 673 MobiDBLite consensus disorder prediction 47 85 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00058 K14026 SEL1, SEL1L; SEL1 protein - csv:101221047 1219.53
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo13g01021 Cmo18g00058 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00046 Cmo-Chr5:168199 Cmo18g00058 Cmo-Chr18:376736 5.61E-08 transposed
Cmo13g01021 Cmo-Chr13:8639956 Cmo18g00058 Cmo-Chr18:376736 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g193 . . Bda06g00823 . . . . Bma12g01247 Cmo13g01021 Cmo18g00058 . . . . . Cpe20g00156 . . . . . . . . . . . . . . . . . . Cone19ag0338 Lsi02g00238 Csa01g00719 Chy12g01393 Cme12g01827 . Blo15g00056 . . Bpe07g01051 . . . Sed08g2761 . . Cma13g00986 Cma18g00076 Car13g00822 Car18g00067 Cpe09g01111 . Bhi08g01299 Tan05g2186 Cmetu12g0492 . Hepe07g2351 . . Cla04g01042 Cam04g1087 Cec01g1600 Cco01g1648 Clacu04g1113 Cmu04g1096 Cre01g1395 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006564 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00058 Cmo_Chr18 FPKM 54.433414 60.124794 71.050179 74.256905 58.788673 59.12077 62.796101 115.288498 111.079544 115.280235