Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00060 ATGTCACTGTCTGACTTCGAATTATACGATTTTGGTTCGAATACAAAGCACAAACCCTCAAGGCCCCGAAATGAGTTTTTCAGCCACAACAGAGCAGAACAGAGCAGGAAGCTGAAGAAGAAGACTGAAGAACTCTCAAATGTCAGCATCAAGAACATGGCATCTTCTTCCTTTGCTAAATCCATAGCTAAATTTCGCCCTTTGATTTTCCTTTCTCGGCACAGCGCGACGCCGACGCCTTTACCTTCGTCTTCTTTCTCGTTCAGCTCTGCGGCTGCAGTTTCTTCTGCTGCTGATCCCCAGTCATCTTCGCTTTCTCAAGCTCAACAGAAACGAAGAGATTCGAAATTGTCAAAATGGCTCCTGTTTTTACCTGGGGCTCTCACGTTTGGCCTTGGAACTTGGCAGATTTTCAGGAGGCAAGAGAAGAAAGAAATTCTAGATTACAGGCAGAAGCGACTGTTAATGGAACCTGTGAACATAAACAGCTTACTTCCATTGAAAGACAAGCTAGATGATCTGGAGTTCAGGAGGGTGATCTGTAAAGGAGTTTTTGATGAGAAGAAATCAATCTTCGTTGGTCCACGTTCGAGAAGCATTTCAGGAGTGACCGAAAATGGCCATTATGTTATTACCCCATTGATGCCCATTCCTGGCCTACCTGATAGTGTGCAGTCACCTGTTTTGGTCAATCGAGGATGGGTTCCACGCACTTGGAAGGAGAAGGCTTTAGAAGTAGACCATCAAGGTAGTGAACAGTCTTCAGATACTGCACCCTCCATGGTTCAAGAGAGTGAGAGAAGCTCGTGGTGGAAGTTCTGGTCGAAAACGACCAAGAATCTAGAGAATGAAGTGAGCCCCATAACTCCAGTAGAAGTTATTGGAGTGGTTCGCACAAGTGAAAAGCCTAGCATATTTGTTCCAGCAAATGATCCTGGCTCTAGCCAATGGTTTTATGTTGATGTTCCAGCAATTGCACGTACTTCTGGACTCCCTGAGGATGCTATTTATGTGGAAGACATAAATGAGAATGTGAACCCAAGTAACCCGTATCCGATTCCGAAGGATGTTAATACGTTGATACGAAGTTCCGTTATGCCACAGGATCATCTTAATTACACATTAACATGGTACTCTCTCTCAGCTGCTGTGACCTTCATGGCAATCAAAAGACTGAGGCAAAAAACGACTCGAAAATGA 1200 44.42 MSLSDFELYDFGSNTKHKPSRPRNEFFSHNRAEQSRKLKKKTEELSNVSIKNMASSSFAKSIAKFRPLIFLSRHSATPTPLPSSSFSFSSAAAVSSAADPQSSSLSQAQQKRRDSKLSKWLLFLPGALTFGLGTWQIFRRQEKKEILDYRQKRLLMEPVNINSLLPLKDKLDDLEFRRVICKGVFDEKKSIFVGPRSRSISGVTENGHYVITPLMPIPGLPDSVQSPVLVNRGWVPRTWKEKALEVDHQGSEQSSDTAPSMVQESERSSWWKFWSKTTKNLENEVSPITPVEVIGVVRTSEKPSIFVPANDPGSSQWFYVDVPAIARTSGLPEDAIYVEDINENVNPSNPYPIPKDVNTLIRSSVMPQDHLNYTLTWYSLSAAVTFMAIKRLRQKTTRK 399
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 382394 387223 - CmoCh18G000600.1 Cmo18g00060 401833

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00060 399 PANTHER SURF1-LIKE PROTEIN 83 399 - -
Cmo18g00060 399 MobiDBLite consensus disorder prediction 13 43 - -
Cmo18g00060 399 ProSiteProfiles SURF1 family profile. 116 396 IPR002994 GO:0016020
Cmo18g00060 399 CDD SURF1 129 387 IPR002994 GO:0016020
Cmo18g00060 399 PANTHER SURFEIT LOCUS PROTEIN 83 399 IPR045214 -
Cmo18g00060 399 Pfam SURF1 family 123 382 IPR002994 GO:0016020
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00060 K14998 SURF1, SHY1; surfeit locus 1 family protein - csv:101221982 578.941
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g184 . Blo16g00110 . . . . . . . Cmo18g00060 . . . . . . . . . . . . . . . . . . . . . Cone2ag0775 . . . . Csa01g00722 Chy12g01390 Cme12g01823 . . . . . . . . . . . . Cma18g00078 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013009 0 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00060 Cmo_Chr18 FPKM 3.128205 3.21518 3.420385 3.552333 4.854267 4.548587 6.530026 7.819685 8.029168 7.248176