Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00062 ATGCGAACCCAGATGGGAAATCGTTTGATTTCTCTGTTGCTCTTCAGTTTCCTTCTTCTACTCCCCACTGCGAAGCCAGATCTTGCTTCTGATAGAACAGCTCTGCTAGCTCTCCGTTCCGCTGTCGGCGGCCGGATTCTTCTGCTTTGGAATGTGACCGATCAGAACACCTGTTCTTGGCCCGGGATTCATTGCGAGGAGAATCGTGTTACTGTTCTTCGTCTTCCCGGCGTGGCGCTTTCTGGTCAGTTACCGGACGGAGTTTTTGGGAACTTGACTCACCTTCGCACTCTCAGTCTTCGGCTCAACGCCCTGTCCGGTCATCTCCCATCAGATCTCTCTGCTTGCGTTAATCTCCGCAACCTCTATCTACAAGGTAATGAGTTTTCGGGCCTTGTCCCTGATTTCTTGTTCCAGCTCCCTGATCTTGTTCGCCTTAATTTAGCCTCCAATAACTTCTCCGGCGAGATCTCATTGAGCTTCAACAATTTGACTCGTCTTAAGACATTGTTCCTTGAAAACAATCGCTTATCTGGGTCTATCCCGGACTTGAAGATCCCACTAGATCAGTTCAATGTTTCTAACAATCAATTAAATGGGTCGGTTCCAAAGGGTTTGCAATCGTTTTCTTCAAATTCCTTCTTGGGTAATTCTCTCTGCGGGCATCCTCTTGCGGCTTGCCCTGGGGAGAATGGGGATAATATCGATTCTAAACACAAGAAAAAGCTCTCAGGAGGAGCCATTGCGGGGATTATCATTGGATCTGTTCTGGGTTTTGTATTGATACTTGTGATCTTAATGCTTTTGTGTCGAAAGAAGAGTGCTAAGGAAACAAGTGCAGTGGATGTTGCCACGGTGAAGCATCCTGAAGTGGAAATTCAGGGCGGTAAGCCACCAGGGGAGGTTGAAAATGGCGGCTACAGTAATGGTTATACTGTGCCAGCCGCCACTGCTGCTGGTGGTGGTGCTGCTGCAACAGTGGCGGCGGGGACTGCAAAGAGGGAAGTGAATGGTAATGGAATTGGCTCCAAAAAACTGGTGTTTTTTGGTAATGCTGCAAGGGTGTTTGATTTGGAGGATCTTTTGAGAGCTTCAGCGGAAGTGTTGGGAAAAGGAAGCTTTGGGACAGCTTACAAAGCTGTTCTTGAAGTGGGTTCTGTGGTGGCTGTGAAGAGATTGAAGGATGTTACCATAACAGAGAGGGAATTCAGGGACAAGATTGAAGCTGTCGGATCAATGGATCATGAATGTTTGGTCCCTCTGAGAGCTTACTATTTCAGTATGGATGAGAAGCTTCTTGTCTATGATTACATGGCCATGGGAAGCTTGTCTGCTCTTCTACACGGGAACAAAGGAGCTGGTAGGACACCATTGAACTGGGAAATCAGGTCAGGAATCGCTCTTGGCGCTGCTCGTGGCATCGAATATCTTCATTCTCAAGGTCCTAATGTTTCCCATGGAAACATAAAGTCATCGAATATTCTTCTAACGAAATCGTACGAAGCTCGAGTCTCTGATTTCGGTTTAGCCCATCTTGTTGGACAACCTTCCACCCCCAACCGAGTTGCTGGATATCGTGCACCGGAGGTGACTGATCCTCGTAAAGTTTCGCAGAAGGCTGATGTCTATAGCTTTGGTGTATTGCTATTAGAGCTTTTGACAGGGAAGGCTCCTACCTACTCCGTTTTAAACGAGGAAGGAGTCGATTTACCAAGATGGGTGCAGTCAGTTGTTAGGGAGGAGTGGACATCCGAAGTTTTCGACCTCGAGCTTCTTAGGTACCAAAACGTCGAGGAGGAGATGGTTCAACTATTGCAACTTGCAGTCGATTGTGCAGCTCAATATCCTGATAAGCGTCCTGCAATGTTGGAAGTCACAAAGCGTATACAAGAGCTTCGTCAATCCAGCATTCACGACGTTGCGAATGTACAACCAGACGCTGGTCATGATTCAGACGACATGGGTTCTAGGTGA 1974 47.42 MRTQMGNRLISLLLFSFLLLLPTAKPDLASDRTALLALRSAVGGRILLLWNVTDQNTCSWPGIHCEENRVTVLRLPGVALSGQLPDGVFGNLTHLRTLSLRLNALSGHLPSDLSACVNLRNLYLQGNEFSGLVPDFLFQLPDLVRLNLASNNFSGEISLSFNNLTRLKTLFLENNRLSGSIPDLKIPLDQFNVSNNQLNGSVPKGLQSFSSNSFLGNSLCGHPLAACPGENGDNIDSKHKKKLSGGAIAGIIIGSVLGFVLILVILMLLCRKKSAKETSAVDVATVKHPEVEIQGGKPPGEVENGGYSNGYTVPAATAAGGGAAATVAAGTAKREVNGNGIGSKKLVFFGNAARVFDLEDLLRASAEVLGKGSFGTAYKAVLEVGSVVAVKRLKDVTITEREFRDKIEAVGSMDHECLVPLRAYYFSMDEKLLVYDYMAMGSLSALLHGNKGAGRTPLNWEIRSGIALGAARGIEYLHSQGPNVSHGNIKSSNILLTKSYEARVSDFGLAHLVGQPSTPNRVAGYRAPEVTDPRKVSQKADVYSFGVLLLELLTGKAPTYSVLNEEGVDLPRWVQSVVREEWTSEVFDLELLRYQNVEEEMVQLLQLAVDCAAQYPDKRPAMLEVTKRIQELRQSSIHDVANVQPDAGHDSDDMGSR 657
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 402885 405625 - CmoCh18G000620.1 Cmo18g00062 401835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00062 657 SUPERFAMILY Protein kinase-like (PK-like) 367 628 IPR011009 -
Cmo18g00062 657 PANTHER OS05G0588300 PROTEIN 9 652 - -
Cmo18g00062 657 Gene3D Ribonuclease Inhibitor 143 227 IPR032675 -
Cmo18g00062 657 ProSiteProfiles Protein kinase domain profile. 363 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00062 657 Gene3D Transferase(Phosphotransferase) domain 1 438 651 - -
Cmo18g00062 657 Pfam Leucine rich repeat 83 128 IPR001611 GO:0005515
Cmo18g00062 657 Pfam Leucine rich repeat N-terminal domain 29 65 IPR013210 -
Cmo18g00062 657 Gene3D Phosphorylase Kinase; domain 1 331 437 - -
Cmo18g00062 657 SUPERFAMILY L domain-like 30 211 - -
Cmo18g00062 657 PANTHER INACTIVE RECEPTOR KINASE-RELATED 9 652 - -
Cmo18g00062 657 Gene3D Ribonuclease Inhibitor 30 140 IPR032675 -
Cmo18g00062 657 ProSitePatterns Protein kinases ATP-binding region signature. 369 391 IPR017441 GO:0005524
Cmo18g00062 657 Pfam Protein kinase domain 366 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g00785 Cmo-Chr15:3859017 Cmo18g00062 Cmo-Chr18:402885 0 dispersed
Cmo18g00062 Cmo-Chr18:402885 Cmo11g00588 Cmo-Chr11:2841086 0 dispersed
Cmo14g00844 Cmo-Chr14:4442207 Cmo18g00062 Cmo-Chr18:402885 0 transposed
Cmo13g01015 Cmo-Chr13:8615786 Cmo18g00062 Cmo-Chr18:402885 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75031 PF00069 Pkinase 4.90E-37 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00062 - - csv:101222458 1105.12