Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo18g00067 | ATGGTGGCTGATCTCTCCTCTCTTGACCCTTTGTCTAATTGCTTTCATACCAATGGAACCAATTCCAAAAGAAAAAGACGACCCGCGGGCACTCCTGACCCAGATGCCGAGGTGGTTTCTCTCTCTCCGAAAACCCTATTGGAATCAGATAGTTACGTATGTGAAATATGTCATCAGGGTTTTCAGAGAGATCAGAATCTACAAATGCATCGGCGTCGACATAAGGTGCCGTGGAAGCTGTTGAAGAGGACTGAGACGACGACGACGACGACGACGCGTAAACGGGTGTTTGTTTGTCCGGAACCGAGCTGCTTACATCATAACCCTACTCATGCTTTGGGGGATTTGGTGGGAATTAAGAAACACTTTAGAAGAAAACATAGTAACCATAAGCAATGGGTATGTGAAAAATGCTCTAAAGGGTATGCTGTTCAATCTGATTACAAAGCTCATCTCAAAACGTGTGGGACTAGAGGCCATTCATGTGACTGTGGTCGAGTTTTCTCAAGGGTGGAGAGTTTCATAGAGCATCAAGATAGTTGCAAATTGGGTCATCATCAACAACCAGAAAAGGAGGCATCTTTACAACCACCACCACCACCACCACCTTGTTTATCAAGAACAGCTTCAAGCCCAACTCCAACTCCTTCTTCAGATACAAATTTCAGCTTCTTAAACCAAACCCACACACCAAAAACTCCCCAAAAACTCATCACCCATCATCAAAATTTGGACCTTCAACTTTCAACCTCTTCAAATTCCATTAAAGTTTCAGTTTCTCCAAAAAAACATGAAATTTACTCAACCCATTTGCAGCTTTCAATTGGGTCTTGCAATTATGGTGACAAAAATGAACAAAAAGATCATTACCAAATGAATTTTGATGAACAAATTGGAAATGGGTTGAATTTATTGAAGCTGAAAGAAGAAGCTATAGAGAGAATGAGAGTGGCAAGGGAAGAGAAGGCAGTGGCTGAAGAAGCAAGAAATGAAGCAAAGAAACAGATTGAATTGGCTGAGAAGGAGTTAGCCAATGCCAAGAGAATGAGACAACAAGCTCAAGCTGAGCTACAAAGAGCTCTTGCTTTGAAAGAACATGCCATCAACAAAATCAACTCCACCATCCTTCAAATCACTTGCCAAGTTTGTAGGCAACACTTTCATCCATTGCACAAAACTTGA | 1182 | 41.79 | MVADLSSLDPLSNCFHTNGTNSKRKRRPAGTPDPDAEVVSLSPKTLLESDSYVCEICHQGFQRDQNLQMHRRRHKVPWKLLKRTETTTTTTTRKRVFVCPEPSCLHHNPTHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDSCKLGHHQQPEKEASLQPPPPPPPCLSRTASSPTPTPSSDTNFSFLNQTHTPKTPQKLITHHQNLDLQLSTSSNSIKVSVSPKKHEIYSTHLQLSIGSCNYGDKNEQKDHYQMNFDEQIGNGLNLLKLKEEAIERMRVAREEKAVAEEARNEAKKQIELAEKELANAKRMRQQAQAELQRALALKEHAINKINSTILQITCQVCRQHFHPLHKT | 393 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 18 | 451754 | 454010 | - | CmoCh18G000670.1 | Cmo18g00067 | 401840 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo18g00067 | 393 | PANTHER | PROTEIN INDETERMINATE-DOMAIN 16-LIKE | 5 | 389 | - | - | |
| Cmo18g00067 | 393 | SMART | c2h2final6 | 97 | 127 | IPR013087 | - | |
| Cmo18g00067 | 393 | SMART | c2h2final6 | 133 | 160 | IPR013087 | - | |
| Cmo18g00067 | 393 | SMART | c2h2final6 | 52 | 74 | IPR013087 | - | |
| Cmo18g00067 | 393 | MobiDBLite | consensus disorder prediction | 193 | 209 | - | - | |
| Cmo18g00067 | 393 | MobiDBLite | consensus disorder prediction | 210 | 230 | - | - | |
| Cmo18g00067 | 393 | Gene3D | Classic Zinc Finger | 29 | 99 | - | - | |
| Cmo18g00067 | 393 | SUPERFAMILY | beta-beta-alpha zinc fingers | 49 | 75 | IPR036236 | - | |
| Cmo18g00067 | 393 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 52 | 74 | IPR013087 | - | |
| Cmo18g00067 | 393 | PANTHER | OS03G0310200 PROTEIN | 5 | 389 | IPR039288 | GO:0009630 | |
| Cmo18g00067 | 393 | MobiDBLite | consensus disorder prediction | 14 | 38 | - | - | |
| Cmo18g00067 | 393 | MobiDBLite | consensus disorder prediction | 182 | 230 | - | - | |
| Cmo18g00067 | 393 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 54 | 74 | IPR013087 | - | |
| Cmo18g00067 | 393 | Coils | Coil | 308 | 370 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cmo13g01006 | Cmo18g00067 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo11g00034 | Cmo-Chr11:143200 | Cmo18g00067 | Cmo-Chr18:451754 | 1.71E-17 | dispersed | |
| Cmo15g00913 | Cmo-Chr15:4635933 | Cmo18g00067 | Cmo-Chr18:451754 | 3.82E-124 | dispersed | |
| Cmo18g00067 | Cmo-Chr18:451754 | Cmo01g01957 | Cmo-Chr1:13912614 | 7.88E-71 | dispersed | |
| Cmo01g00783 | Cmo-Chr1:4105944 | Cmo18g00067 | Cmo-Chr18:451754 | 3.73E-156 | transposed | |
| Cmo13g01208 | Cmo-Chr13:9482716 | Cmo18g00067 | Cmo-Chr18:451754 | 4.67E-167 | transposed | |
| Cmo13g01006 | Cmo-Chr13:8563956 | Cmo18g00067 | Cmo-Chr18:451754 | 0 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 11469 | None | None | None | None | Cmo | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo18g00067 | K25871 | - | csv:101210748 | 573.548 |