Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00067 ATGGTGGCTGATCTCTCCTCTCTTGACCCTTTGTCTAATTGCTTTCATACCAATGGAACCAATTCCAAAAGAAAAAGACGACCCGCGGGCACTCCTGACCCAGATGCCGAGGTGGTTTCTCTCTCTCCGAAAACCCTATTGGAATCAGATAGTTACGTATGTGAAATATGTCATCAGGGTTTTCAGAGAGATCAGAATCTACAAATGCATCGGCGTCGACATAAGGTGCCGTGGAAGCTGTTGAAGAGGACTGAGACGACGACGACGACGACGACGCGTAAACGGGTGTTTGTTTGTCCGGAACCGAGCTGCTTACATCATAACCCTACTCATGCTTTGGGGGATTTGGTGGGAATTAAGAAACACTTTAGAAGAAAACATAGTAACCATAAGCAATGGGTATGTGAAAAATGCTCTAAAGGGTATGCTGTTCAATCTGATTACAAAGCTCATCTCAAAACGTGTGGGACTAGAGGCCATTCATGTGACTGTGGTCGAGTTTTCTCAAGGGTGGAGAGTTTCATAGAGCATCAAGATAGTTGCAAATTGGGTCATCATCAACAACCAGAAAAGGAGGCATCTTTACAACCACCACCACCACCACCACCTTGTTTATCAAGAACAGCTTCAAGCCCAACTCCAACTCCTTCTTCAGATACAAATTTCAGCTTCTTAAACCAAACCCACACACCAAAAACTCCCCAAAAACTCATCACCCATCATCAAAATTTGGACCTTCAACTTTCAACCTCTTCAAATTCCATTAAAGTTTCAGTTTCTCCAAAAAAACATGAAATTTACTCAACCCATTTGCAGCTTTCAATTGGGTCTTGCAATTATGGTGACAAAAATGAACAAAAAGATCATTACCAAATGAATTTTGATGAACAAATTGGAAATGGGTTGAATTTATTGAAGCTGAAAGAAGAAGCTATAGAGAGAATGAGAGTGGCAAGGGAAGAGAAGGCAGTGGCTGAAGAAGCAAGAAATGAAGCAAAGAAACAGATTGAATTGGCTGAGAAGGAGTTAGCCAATGCCAAGAGAATGAGACAACAAGCTCAAGCTGAGCTACAAAGAGCTCTTGCTTTGAAAGAACATGCCATCAACAAAATCAACTCCACCATCCTTCAAATCACTTGCCAAGTTTGTAGGCAACACTTTCATCCATTGCACAAAACTTGA 1182 41.79 MVADLSSLDPLSNCFHTNGTNSKRKRRPAGTPDPDAEVVSLSPKTLLESDSYVCEICHQGFQRDQNLQMHRRRHKVPWKLLKRTETTTTTTTRKRVFVCPEPSCLHHNPTHALGDLVGIKKHFRRKHSNHKQWVCEKCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDSCKLGHHQQPEKEASLQPPPPPPPCLSRTASSPTPTPSSDTNFSFLNQTHTPKTPQKLITHHQNLDLQLSTSSNSIKVSVSPKKHEIYSTHLQLSIGSCNYGDKNEQKDHYQMNFDEQIGNGLNLLKLKEEAIERMRVAREEKAVAEEARNEAKKQIELAEKELANAKRMRQQAQAELQRALALKEHAINKINSTILQITCQVCRQHFHPLHKT 393
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
18 451754 454010 - CmoCh18G000670.1 Cmo18g00067 401840
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00067 393 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 5 389 - -
Cmo18g00067 393 SMART c2h2final6 97 127 IPR013087 -
Cmo18g00067 393 SMART c2h2final6 133 160 IPR013087 -
Cmo18g00067 393 SMART c2h2final6 52 74 IPR013087 -
Cmo18g00067 393 MobiDBLite consensus disorder prediction 193 209 - -
Cmo18g00067 393 MobiDBLite consensus disorder prediction 210 230 - -
Cmo18g00067 393 Gene3D Classic Zinc Finger 29 99 - -
Cmo18g00067 393 SUPERFAMILY beta-beta-alpha zinc fingers 49 75 IPR036236 -
Cmo18g00067 393 ProSiteProfiles Zinc finger C2H2 type domain profile. 52 74 IPR013087 -
Cmo18g00067 393 PANTHER OS03G0310200 PROTEIN 5 389 IPR039288 GO:0009630
Cmo18g00067 393 MobiDBLite consensus disorder prediction 14 38 - -
Cmo18g00067 393 MobiDBLite consensus disorder prediction 182 230 - -
Cmo18g00067 393 ProSitePatterns Zinc finger C2H2 type domain signature. 54 74 IPR013087 -
Cmo18g00067 393 Coils Coil 308 370 - -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cmo13g01006 Cmo18g00067 CST
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g00034 Cmo-Chr11:143200 Cmo18g00067 Cmo-Chr18:451754 1.71E-17 dispersed
Cmo15g00913 Cmo-Chr15:4635933 Cmo18g00067 Cmo-Chr18:451754 3.82E-124 dispersed
Cmo18g00067 Cmo-Chr18:451754 Cmo01g01957 Cmo-Chr1:13912614 7.88E-71 dispersed
Cmo01g00783 Cmo-Chr1:4105944 Cmo18g00067 Cmo-Chr18:451754 3.73E-156 transposed
Cmo13g01208 Cmo-Chr13:9482716 Cmo18g00067 Cmo-Chr18:451754 4.67E-167 transposed
Cmo13g01006 Cmo-Chr13:8563956 Cmo18g00067 Cmo-Chr18:451754 0 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11469 None None None None Cmo TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00067 K25871 - csv:101210748 573.548