Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00078 ATGGAGGAGAAAGGAGTTGAGGATGATGTGGTGAAGCGTTTGGATTGTGAACGCGATCCAAATCAGAAGAACAGGCAGAGATTTGGGGGAGTAGGTGGAGTACTGTCGATCGAGCAGTTCTTTGAAGATCAAGAAGTTCCTTCATGGAGGAAGCAGCTAACATTTAGGGCTTTTTTCGTCAGTTTTTGGTTGAGCATTTTGTTCAGCGTTATTGTAATGAAACTCAATCTAACCACTGGCATTATACCTTCACTCAACGTATCTGCTGGTCTGTTAGGATTTTTCTTCGTCAAATCATGGACGAAATTTTTGGAGAGATCAGGCTTCTTGAGGCAGCCTTTCACCAGGCAGGAGAACACCGTCATCCAAACTTGCGTTGTTGCCTCTTCTGGCATCGCTTTCAGCGGAGGTTTTGGAAGTTACTTATTTGGAATGAGCGAACGGATTGCTCATAAATCATCAGGCAGTAAAGATTTCAAAGATCCATCATTGGGATGGATGATTGGGTTTCTATTTGTTGTTAGCTTTCTTGGCCTTTTCTCGGTTGTACCCTTGCGAAAGATCATGGTCATAGACTTCAAATTAACTTATCCAAGTGGTACTGCAACTGCTCATTTGATTAATAGTTTCCATACTCCCCGAGGAGCTGCACTAGCAAAGAAGCAGGTGAAAATGCTTGGCAGATTTTTCTCTGTGAGCTTCTTGTGGGGCTTTTTTCAATGGTTCTTTATGACTGCAGATGGTTGTGGGTTTTACTTTGACTTCTCAACAACATATATTGGAGTAGGGATGATTTGCCCCCACATAATTAATGTATCTGTGCTTGTTGGAGGAATTATCTCTTGGGGCATAATGTGGCCTCTCATAGAAGAAAAAAAAGGTCAATGGTATAGTGAGAAATTGAGCTCAGACGACCTAAGTGGACTTGAAGGTTACAAGGTATTTATAGCAATAGCCATAATTCTTGGTGATGGCCTGTACAACTTCTTCAAAGTATTGACTCGGACCCTCTCGGGCTTGCTCCACCAACTTCGACACAAAAGAGATACCGAAGAGTTATCCTCGGAAAATTCATCCAGGTCTGAGTTATCTTATGACGATGAACGAAGGAAACAACTTTTTCTGAAGGATCAAATACCAATCTGGCTTGCCATTGGAGGTTATGTTGTGATTGCTGTAGTGTCGATTAATACTCTTCCGCACATTTTTACCCAGCTGAAGTGGTATTATATCTTGGTCATCTACATCTTTGCTCCTGTCTTGGCCTTCTGTAATGCATATGGATGTGGACTCACGGATTGGTCTCTGGCATCCACCTATGGAAAGCTTGCCATTTTCACCATTGGTGCCTGGGCTGGACCTTTGCATGGGGGAGTTGTTGCTGGTCTATCAGCTTGTGGGGTCTTGATGAATATTGTCTCCACTGCCTCTGACCTAATGCAGGATTTCAAGACTGGCTTTCTAACTTTGGCTTCACCTCGATCCATGTTTGTCAGCCAAGTAGTAGGCACAACAATGGGCTGCATTATTTCCCCTTGTGTCTTTTGGCTCTTTTACAAGGCATTTGATGATCTTGGTCTTCCAACTGGTGAATACACTGCCCCTAATGCAGTTCTCTTTCGCAACATGGCCGTGTTAGGTGTTGAAGGCGTCTCGAGTCTACCAAAGAATTGTATGACCTTATGTTACGTGTTCTTTGCCACCTCCATTTTGATTAACTTGATTAAAGACTTGATACCAAAGAAGTGGGCAAGGTTCATTCCTCTACCAATGGCAATGGCAATACCATTCTATATAGGGCCGTACTTCACAATTGATATGAGCCTTGGAAGTCTGATATTGTTTGTGTGGCAGAAGCTAAACAAAACCAAGGCCGATGCCTTCGGTCCAGCTGTCGCATCGGGTTTGATATGTGGGGACGGGATTTGGACTTTGCCGAGTTCAATTCTGGCTTTAGCGGGAGTCAAGGCACCAATATGCATGAAGTTCCTATCAAGCTCAAACAACGCAAAAGTAGATAAGTTCCTAAGCTCGTCCATCTGA 2043 43.42 MEEKGVEDDVVKRLDCERDPNQKNRQRFGGVGGVLSIEQFFEDQEVPSWRKQLTFRAFFVSFWLSILFSVIVMKLNLTTGIIPSLNVSAGLLGFFFVKSWTKFLERSGFLRQPFTRQENTVIQTCVVASSGIAFSGGFGSYLFGMSERIAHKSSGSKDFKDPSLGWMIGFLFVVSFLGLFSVVPLRKIMVIDFKLTYPSGTATAHLINSFHTPRGAALAKKQVKMLGRFFSVSFLWGFFQWFFMTADGCGFYFDFSTTYIGVGMICPHIINVSVLVGGIISWGIMWPLIEEKKGQWYSEKLSSDDLSGLEGYKVFIAIAIILGDGLYNFFKVLTRTLSGLLHQLRHKRDTEELSSENSSRSELSYDDERRKQLFLKDQIPIWLAIGGYVVIAVVSINTLPHIFTQLKWYYILVIYIFAPVLAFCNAYGCGLTDWSLASTYGKLAIFTIGAWAGPLHGGVVAGLSACGVLMNIVSTASDLMQDFKTGFLTLASPRSMFVSQVVGTTMGCIISPCVFWLFYKAFDDLGLPTGEYTAPNAVLFRNMAVLGVEGVSSLPKNCMTLCYVFFATSILINLIKDLIPKKWARFIPLPMAMAIPFYIGPYFTIDMSLGSLILFVWQKLNKTKADAFGPAVASGLICGDGIWTLPSSILALAGVKAPICMKFLSSSNNAKVDKFLSSSI 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 522094 527184 - CmoCh18G000780.1 Cmo18g00078 401851

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00078 680 TIGRFAM OPT_sfam: oligopeptide transporter, OPT superfamily 49 651 IPR004813 GO:0035673
Cmo18g00078 680 PANTHER OLIGOPEPTIDE TRANSPORTER YGL114W-RELATED 19 677 IPR045035 GO:0035673
Cmo18g00078 680 PANTHER METAL-NICOTIANAMINE TRANSPORTER YSL8-RELATED 19 677 - -
Cmo18g00078 680 Pfam OPT oligopeptide transporter protein 52 650 IPR004813 GO:0035673
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00078 - - - csv:101211969 1232.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g00050 Cmo-Chr15:297150 Cmo18g00078 Cmo-Chr18:522094 6.05E-30 dispersed
Cmo16g00033 Cmo-Chr16:155618 Cmo18g00078 Cmo-Chr18:522094 0 dispersed
Cmo18g00078 Cmo-Chr18:522094 Cmo18g01365 Cmo-Chr18:12815949 0 dispersed
Cmo13g00993 Cmo-Chr13:8495819 Cmo18g00078 Cmo-Chr18:522094 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g954 . . . . . . . . . Cmo18g00078 . . . . . Cpe20g00180 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed08g2805 . . Cma13g00959 Cma18g00101 Car13g00795 Car18g00091 . . Bhi08g01350 Tan05g2138 Cmetu04g2126 Lac10g0326 Hepe07g2321 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001400 2 2 2 3 2 2 3 2 2 3 2 2 3 3 3 3 2 1 3 2 3 2 2 1 2 3 2 6 4 2 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00078 Cmo_Chr18 FPKM 11.162307 13.227495 11.60213 11.421254 15.450848 15.554875 17.857683 15.681562 15.756577 16.038939