Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00079 ATGGAAAAATCAGAATGGGTCAGCCTTCGACTCTCTCGCCGATTAAAATGGGTACAAAAAACGATGCAGTGTGCTCTTGAAAAAAGTAGTGAATTTCAGAAAGTTCCAGACAAAGGAAAGCAGTTATTAGAAGTGAAAATTCAGGAAGATAATTGTTCAAGAAGAATTAAGGATTCTGAAGTTTCTTCTTTTGAATGGAGGAACTTTTTTGATTACAGATCTGCCGTCATTAGTATTCTTACACTGGAATCTGATGGGCTCTGGAGAATTGTTGCACTACCATTGCAAGGCCTAGATAGCTTGCATGTGAGCTGCCTGCCTCAAATGAATCAGTTTACAGCTGATAGAAAATTGGTGCACAACGGCCCTGCCTCTAATGGCACATACTCAGTCAATTCATTCAGATGTAGAAGCTTGTTGGAGTCGAATAAAAACTTATTGGATAGTAAAGCATTTAAGTCGTCAAATAAAGCTTCCAGCAAATTCTCTTGGAGGAGTTCATGCTCCAGCTCTGCTTTGATATCAGGTGACTCTAGTGCAATCTCTGACATCCCCATTGGTGAAGCTAAAATTCAGAGATATGGGAAGAAAAATTCAAGAAAGAAGGCAAAAAAGAGGGATATAGAATGTAAGAAGACATCTTCTGATTTTGTCTCTGCTGAGACGGAAATCTCGTCCGAGGATTCTGCTCGTGGAAGTTCATTGTTAGAAGCTTGTGGAAATAATGGTTCAGATTGTAGAGATGGGCCTGTTTTGTGTTCGACAGCACGAGAAACTTTCCCGTCAGATACTCGGGCCAGTAAAAATGATTTTAAACGAGATTCTGAGAGGATTATTCAGCCACTTGGAACCACAGATTCAATATCCTCTGAAATTGTTGAGGGGGATGCATCTGAGGTTCCACCTTCTGCAACAAAGAATTCTAGTGGGGATTATAATGGTTATGTATCTGAAAATCAGCCCCTTATCAAAGCACCTGGTTGTACCCGTTTCGATGGGGAAGTAGATCGAAAAGAAAGGCTATTTAATGGCTGTTGCAATGATTTTTGCTCTAAGGATTCTTTTGATAATAATTCCCCAGATTCTAACTGTGATAGTCATACCTTGAAATTAACTGAAAATGAGGGTTTTGGAATTGATCTGTTGGAAGGACAGAATTCCCCTTCTAGAGAGAATGATTGTTCTCATCATAACTCCATACGAGATGAAGTGGACGTTAATGCCGAAGAGGAGAAAGCTAATCATGGTATTCAAGGATGTACTGCTAGTGAAACGCGTTTGATTTTACCTGGAAAGAAAACTAAACAGAATAAAAAATTGTCTGGGAATTCTAGGACGAACAGATTTGGTGGTATGGGGAGTTCGCAACGGTGTACCGGGAAGGAAAACAGCCGTACTGTCTGGCAAAAGGTTCAAAAGAACAACAGTGGTGGATGTTGTGCACAGTTGGACCAGGTAAGTCCTCCTGTTAGCAAACAGTTAAAAGGCGTATGTAATCCTGTTGGTGTGCAAACGCCAAAGGTCAAGGATAAGAAAACTGGGAATAGAAAACAACTGAAAGACAAATTTTCCAAGAGGTTGAAAAATAAGAATACTTCAGAACAAGATAAGATCTATCGTCCGAGTAAGAGTAGTAGTGGTAGTAATACTAATTCAATGGCTCACAATCGACCAAACGAAAGATTGGATATTCCAGCTATGGGCTTTGACATAAGTAAATCAAGTGGCGGTTCGAGAGCTCCGTTTCAGAATGATTCTACTGATAAATGCACGACTTCTGAATCGTCTGAAAGTACGCAGGTCTGTCTGGATGGGTCGATGTCAGACAAACTTATCTCCGATGGTTTGAATAATCAAAGAGTAGAGAATGAGTCCAGCACATCGCTCGGGTCATGCAGCTCCTTAAATCAGTCTAATCCGTTAAAGGCTCAGTCTCCTGTTTACGTCCCTCATCTTTTCTTTCAAGCAACAAAAGGAAGTTCACTTGCTGAACGCAGCAAACACAGCAACCAATCTCGATCACCTCTTCAAAACTGGGTGCCAAGTGTGGCAGAGGGTTCCAGATTGACGACCGCGTTGGCCAGACCGGATTTTTCATCTCTGAAAGATGCAAATAAGCAACCTGCTGAGTTCGGTATTTCAGAAAAATCAATTCAAGAAAGTGTTGATTGCAACTTACTAGATCCTGTTTCTAATTTTATTGAGGCGATACAGCATTCTAGAGACAGAAATCATGATCCTCTAGAAAAGGAATGCGAGGCGCAGGAGTCGCACGGTCATGATACAAACGCATTACAGGATCGTAGTTGCGAGCTTGATGTGGATGAGCATTTTAATTGCAAATCCACATGTGGAGATGCAACAAAAATTGAACAGGTAGTGAATAGTGCATGTAAGGCACAATTGCCATTTGATGCTGTTCATCAAATTGCAGAGTTCGAAAGATTCCTTCATTTGTCCTCTCCTGTTATCAGCCAGAGACCCAACTTAAGAAGTTGTAAAATTTGCTCAAAAAATTCGCTAGGCGATGGGATACCGTGTAGCCACGAGACTGCCAACATTTCTTTGAGTTGCCTGTGGCAATGGTATGAAAAACATGGCAGCTATGGCTTAGAAGTAAAAGCCAATGGTCATGAAGGTTCAAATGGATTTGGTGCTGATAACTCTGAATTTCATGCATATTTTGTTCCATTTCTTTCGGCTGTTCAACTATTTAAGAGCCATAAAACTCATTCTGGAGCAACTACTTGTCCTGTGGGTTTAGATTCACGTGTAAGCGATATAAAAGCGAACGAGCCCCCAACTGCTCAACTTCCAATATTTTCAGTCCTTTTCCCCAAGCCTTGTACTGATGATGCCAACGTTCTCCAGGCCTGTAGTCAGCTTCATAGTTCAGAGGAACCTTTGGCTTCTGAGAAGAGGAACTTTTCTGAACAATCTGTCGACTCAAATTTATCTGGAGAGTCGGAACTTATTTTCGAATATTTTGAGGAGGAACAACCTCAGCAGAGAAGGCCATTGTTTGATAAAATACGTCAGCTGGTCAAGGGAGATGGATGTCTTCGAGGAAAAATATATGGGGATCCAACCGTGCTCGAGTCCATTACTTTGAATGATCTGCACGCCGGATCATGGTACTCAGTGGCATGGTATCCCATTTATAGGATACCGGATGGCAACCTTCGAGCTGCATTTTTGACTTACCACTCACTAGGACATTTCGTTTGTAGAACTTCCCAATCTAGCTCTTCAGAAACTGATTCTTGTATAGTATGTCCAGTTGTGGGTCTTCAAAGTCATAATGCACAGAATGAATGCTGGTTCAAGCCAAGAAATAGTACGTCGATGTTTAATCCTCCCGGAGTCGTTGACGAACGCCTGAGGACGCTGGAAGAGACAGCATCCCTCATGGCGAGAGCCGTTGTTAAGAAAGGAAATCTCAACGCCAGAAACAGACATCCAGACTACGAGTTCTTCCTCTCCCGACGATGCTAG 3495 41.8 MEKSEWVSLRLSRRLKWVQKTMQCALEKSSEFQKVPDKGKQLLEVKIQEDNCSRRIKDSEVSSFEWRNFFDYRSAVISILTLESDGLWRIVALPLQGLDSLHVSCLPQMNQFTADRKLVHNGPASNGTYSVNSFRCRSLLESNKNLLDSKAFKSSNKASSKFSWRSSCSSSALISGDSSAISDIPIGEAKIQRYGKKNSRKKAKKRDIECKKTSSDFVSAETEISSEDSARGSSLLEACGNNGSDCRDGPVLCSTARETFPSDTRASKNDFKRDSERIIQPLGTTDSISSEIVEGDASEVPPSATKNSSGDYNGYVSENQPLIKAPGCTRFDGEVDRKERLFNGCCNDFCSKDSFDNNSPDSNCDSHTLKLTENEGFGIDLLEGQNSPSRENDCSHHNSIRDEVDVNAEEEKANHGIQGCTASETRLILPGKKTKQNKKLSGNSRTNRFGGMGSSQRCTGKENSRTVWQKVQKNNSGGCCAQLDQVSPPVSKQLKGVCNPVGVQTPKVKDKKTGNRKQLKDKFSKRLKNKNTSEQDKIYRPSKSSSGSNTNSMAHNRPNERLDIPAMGFDISKSSGGSRAPFQNDSTDKCTTSESSESTQVCLDGSMSDKLISDGLNNQRVENESSTSLGSCSSLNQSNPLKAQSPVYVPHLFFQATKGSSLAERSKHSNQSRSPLQNWVPSVAEGSRLTTALARPDFSSLKDANKQPAEFGISEKSIQESVDCNLLDPVSNFIEAIQHSRDRNHDPLEKECEAQESHGHDTNALQDRSCELDVDEHFNCKSTCGDATKIEQVVNSACKAQLPFDAVHQIAEFERFLHLSSPVISQRPNLRSCKICSKNSLGDGIPCSHETANISLSCLWQWYEKHGSYGLEVKANGHEGSNGFGADNSEFHAYFVPFLSAVQLFKSHKTHSGATTCPVGLDSRVSDIKANEPPTAQLPIFSVLFPKPCTDDANVLQACSQLHSSEEPLASEKRNFSEQSVDSNLSGESELIFEYFEEEQPQQRRPLFDKIRQLVKGDGCLRGKIYGDPTVLESITLNDLHAGSWYSVAWYPIYRIPDGNLRAAFLTYHSLGHFVCRTSQSSSSETDSCIVCPVVGLQSHNAQNECWFKPRNSTSMFNPPGVVDERLRTLEETASLMARAVVKKGNLNARNRHPDYEFFLSRRC 1164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 529027 536700 - CmoCh18G000790.1 Cmo18g00079 401852

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00079 1164 Pfam Protein of unknown function (DUF789) 811 1159 IPR008507 -
Cmo18g00079 1164 PANTHER PHOTOSYSTEM II STABILITY/ASSEMBLY FACTOR HCF136, CHLOROPLASTIC 22 1163 - -
Cmo18g00079 1164 MobiDBLite consensus disorder prediction 433 463 - -
Cmo18g00079 1164 MobiDBLite consensus disorder prediction 436 463 - -
Cmo18g00079 1164 MobiDBLite consensus disorder prediction 538 557 - -
Cmo18g00079 1164 MobiDBLite consensus disorder prediction 497 603 - -
Cmo18g00079 1164 MobiDBLite consensus disorder prediction 576 603 - -
Cmo18g00079 1164 PANTHER DUF789 FAMILY PROTEIN 22 1163 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00079 - - - cpep:111801730 2172.13
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g00079 Cmo-Chr18:529027 Cmo11g00290 Cmo-Chr11:1412666 5.79E-14 dispersed
Cmo18g00079 Cmo-Chr18:529027 Cmo20g00580 Cmo-Chr20:2855710 4.65E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g952 . . . . . . . . . Cmo18g00079 . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00276 Csa01g00754 . Cme12g01789 . . . . . . . . . . . . Cma18g00102 . Car18g00092 Cpe09g01088 . Bhi08g01351 Tan05g2137 . . . . . Cla01g01459 Cam01g1526 Cec01g1567 Cco01g1614 Clacu01g1550 Cmu01g1440 Cre01g1362 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008692 0 4 0 0 0 1 1 1 1 1 1 1 1 2 1 1 1 0 1 1 1 1 1 1 1 1 1 4 2 2 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00079 Cmo_Chr18 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.102071 0.0 0.0 0.0