Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00086 ATGCACTTGACTGGAGTCGAACTCGGGCTCGTTGCCGCCACCGCCGCCGTCGTCCTTCGTCACCGTACTCTCCATATTGAATCGGTTACTTACTCAGTTACCGAATCAACGCTGGTGGGAGCAGCAGATATGTCTGCAGTGGAAGAGAAGCTAGAGGAAATCGAACCTTCAACAAGGAATAATGAGGAGCCAGTGGAAGAAGATGATGAAGAGGATGACCTTTCGTGGTCATCAGACTCTGAGATTGGAGAAGCATTGGACTGGTTGGATGCTAAGGAAGATCGTGAGGCAGATGGGGCTTTTTCACTCAATGCTTGGCGTCCTAATGCTCATGGTGGGCTTTATTCTCGTCATAATTCCTCAACTCTTCAACCTCTCTCAAATCGAAACCAGAAGTTTACCAATCATATTCGAGCTTCACCTCTTGGGGAATGGGAAGGGAGGTTTAATGTAGGAATGTCAAACTCTGTTACCACTGCCATTCGAGACAGTGTCAAGGAAATGGCGATAGGAAAAACGAAAACTACAGAGAAAGCTGATCGTGCAACTGTCGAACAGGCAATAGATCCTAGAACTCGGATGGTTTTATTCAAGATGCTCAATCGAGGCGTTTTTCATGACATTAATGGCTGCATTTCTACTGGGAAAGAAGCCAATGTCTATCATGCAACAAAATCTGATGGGCAAGAATTCGCTGTCAAAATCTACAAAACTTCAGTTTTGGTGTTCAAGGATAGGGATCGCTATGTCCAAGGCGACTACCGTTTCCGACATGGATATTGCAGGCATAATCCCAGGAAAATGGTTAAGACATGGGCCGAGAAGGAAATGAGGAACTTGATGAGGTTAAAAGCTGCAGGAATTAGATGCCCGACTCCTCTCCTCTTGAGACTGCATGTGTTGGTCATGGAATTTATCGGTAAGACAGGTTGGGCTGCACCTCGTCTCAAGGACGCTGCCTTGTCGTTAAACAGGTTACGTGAAAGTTATTTGGAGGTTATTATTACAATGCGGACCCTCTACCAGAAATGCAAGCTAGTGCATGGAGATCTTAGTGAATATAACATACTTTATTTTGAGGGTCACCTTTATATTATAGATGTTTCTCAATCTGTTGATCTTGACCACCCTCATGCCCTCGATTTCCTTCGTGAAGATTGTCTTCACGTTTCTGATTTCTTCAAAAAACATGGTGTTGCTGTAATGACAATTCGAGAACTGTTCGATTTTATAGTCGATCCATGCCTCACTGATGAGACGATTGATAGTTATCTGGAGGAGCTGCAAGAAAAAATCTCGGCAAGAGGTGATATATCAGTGGAGGATGAGATTGCAGATTCTGTATTTGTGCAGTCGTATATTCCGAAGACCTTGGATAGTGTCAAACATGCTGAGGAGGATGTAATACGTTTAACAAGTGGTCAGAACACTGAAGATATGTACTACAAGACCATTACAGGGTTAAAACAGGCTCTTCCAAGAGTTCAACCTGCATCAGAGCTAGAACACGACACAGACCCGATTGAACAGTCCGAAAATTTAACCGGTTTGTCAAATTCTTGCGAGAAGGAAACCGAATCAGTGTCAGAGTCAGATGAAGAGAGCTCGGATGAGTCGGAAGAAGAAGACGGACCAAGTTCTTCAACTGAGACGACGACTCAAACACCAGCTGAGAGGAAAGCTGCTAGAAAAGAGAACAAAAAGAAGGTGAAGGAAGAGAAGAGAGAGTCCCGCAAAAACAAGGTTCCAAAGGCTGTGAAGAAGAGGAAGAAGAAGTTGGCTAAGTCCCACAAGTAA 1797 44.24 MHLTGVELGLVAATAAVVLRHRTLHIESVTYSVTESTLVGAADMSAVEEKLEEIEPSTRNNEEPVEEDDEEDDLSWSSDSEIGEALDWLDAKEDREADGAFSLNAWRPNAHGGLYSRHNSSTLQPLSNRNQKFTNHIRASPLGEWEGRFNVGMSNSVTTAIRDSVKEMAIGKTKTTEKADRATVEQAIDPRTRMVLFKMLNRGVFHDINGCISTGKEANVYHATKSDGQEFAVKIYKTSVLVFKDRDRYVQGDYRFRHGYCRHNPRKMVKTWAEKEMRNLMRLKAAGIRCPTPLLLRLHVLVMEFIGKTGWAAPRLKDAALSLNRLRESYLEVIITMRTLYQKCKLVHGDLSEYNILYFEGHLYIIDVSQSVDLDHPHALDFLREDCLHVSDFFKKHGVAVMTIRELFDFIVDPCLTDETIDSYLEELQEKISARGDISVEDEIADSVFVQSYIPKTLDSVKHAEEDVIRLTSGQNTEDMYYKTITGLKQALPRVQPASELEHDTDPIEQSENLTGLSNSCEKETESVSESDEESSDESEEEDGPSSSTETTTQTPAERKAARKENKKKVKEEKRESRKNKVPKAVKKRKKKLAKSHK 598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 578419 582439 - CmoCh18G000860.1 Cmo18g00086 401859

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00086 598 Coils Coil 560 580 - -
Cmo18g00086 598 MobiDBLite consensus disorder prediction 62 77 - -
Cmo18g00086 598 Gene3D Transferase(Phosphotransferase) domain 1 313 454 - -
Cmo18g00086 598 MobiDBLite consensus disorder prediction 50 77 - -
Cmo18g00086 598 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO1 65 596 - -
Cmo18g00086 598 MobiDBLite consensus disorder prediction 581 598 - -
Cmo18g00086 598 Gene3D Phosphorylase Kinase; domain 1 205 307 - -
Cmo18g00086 598 PIRSF STPK_RIO1 34 598 IPR017407 GO:0004674
Cmo18g00086 598 MobiDBLite consensus disorder prediction 510 524 - -
Cmo18g00086 598 ProSitePatterns RIO1/ZK632.3/MJ0444 family signature. 346 357 IPR018935 GO:0004674|GO:0005524
Cmo18g00086 598 SUPERFAMILY Protein kinase-like (PK-like) 208 393 IPR011009 -
Cmo18g00086 598 MobiDBLite consensus disorder prediction 496 598 - -
Cmo18g00086 598 CDD RIO1_euk 208 397 - -
Cmo18g00086 598 MobiDBLite consensus disorder prediction 527 545 - -
Cmo18g00086 598 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO1 65 596 - -
Cmo18g00086 598 MobiDBLite consensus disorder prediction 557 580 - -
Cmo18g00086 598 Pfam RIO1 family 219 406 - -
Cmo18g00086 598 SMART rio_2 177 413 IPR000687 GO:0004674|GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00086 K07178 RIOK1; RIO kinase 1 [EC:2.7.11.1] - csv:101208620 891.723
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo13g00801 Cmo18g00086 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g00086 Cmo-Chr18:578419 Cmo06g00769 Cmo-Chr6:3998256 4.17E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g882 . Blo16g00245 . . . . Bma06g00240 . Cmo13g00801 Cmo18g00086 . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00459 Csa01g00915 Chy12g01209 Cme12g01631 . . Bda11g01628 . . . . . . . . Cma13g00772 Cma18g00109 Car13g00619 . . . . . . . . . . Cla03g00315 Cam03g0334 Cec03g0325 Cco03g0338 Clacu03g0335 Cmu03g0941 Cre03g0635 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007073 1 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 4 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00086 Cmo_Chr18 FPKM 4.423453 4.359702 7.467178 6.220903 3.898513 3.837738 3.79741 1.435269 1.7783 1.428028