Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo18g00087 | ATGGCTTGGACGGAAAGGAGATGGGCCTCAGCGATATCAAAACAAGGAAGAGTTGGTGGTTCGTTTTCAGCTGTTTTTGCCGCCGCCGCCGCCATGCCGCCGAGACGATATGCCGTTGGACGGGCCGATGAGGCCACCAACCCCGACTCCGTTAGAGCCACCTTGGCTGAGTTCCTTTCCACTTTCATCTTCGTCTTTGCCGGAGAAGGCTCCGTCCTCGCTCTCGATAAAATTTTCAAGCCAGCAGACTATGGAAGCTACGGTCGTGGTGGTTATGGTTACAGCCATGGTCACGGTTACGGTCGAAGGGGAGGCGACACGGGCCGTGGGGCATCGGATTTAGTAGTAATAGCAATAGCGCATGCATTTGCGCTGTTCTCGGCCGTAGCGGCGAGTATCAACGTCTCCGGTGGGCATGTGAATCCTGCTGTTACATTTGGTGTACTTCTAGGAGGAAGGATTTCTCTTATCCGTGCATTCTTCTATTGGGTAGCTCAGATTTTGGGCGCCATTGTGGCTTCCCTGATCTTGAGACTCGCAACGGGTGGCATGAGGCCAATGGGGTTCTTCGTTTCATCAGGCATATCAGAACTGCACGGGTTTCTACTAGAGATATTGCTTACATTTGCTTTGGTGTACGTAGTCTACGCAACAGCAGTAGACCCGAAGAGGGGAAGTTTGGAAACAATAGCACCACTGGCAATCGGGTTAATAGTCGGGGCGAATATTCTAGTGGGTGGGGTATTTGATGGGGCCTGTATGAACCCGGCCCGGGCCTTTGGGCCGTCGTTAGTGGGCTGGAGATGGGACAACCATTGGATCTACTGGATTGGGCCCTTGCTGGGAGGTGGGCTTGCTGCACTTGTCTATGAGTATTTGGTGATTCCAGTTGAACCTCCTGTACATGCCCCCCACCAGCCTTTAGCTCCGGAAGATTACTAA | 942 | 52.97 | MAWTERRWASAISKQGRVGGSFSAVFAAAAAMPPRRYAVGRADEATNPDSVRATLAEFLSTFIFVFAGEGSVLALDKIFKPADYGSYGRGGYGYSHGHGYGRRGGDTGRGASDLVVIAIAHAFALFSAVAASINVSGGHVNPAVTFGVLLGGRISLIRAFFYWVAQILGAIVASLILRLATGGMRPMGFFVSSGISELHGFLLEILLTFALVYVVYATAVDPKRGSLETIAPLAIGLIVGANILVGGVFDGACMNPARAFGPSLVGWRWDNHWIYWIGPLLGGGLAALVYEYLVIPVEPPVHAPHQPLAPEDY | 313 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 583155 | 585165 | + | CmoCh18G000870.1 | Cmo18g00087 | 401860 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo18g00087 | 313 | TIGRFAM | MIP: MIP family channel proteins | 56 | 290 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cmo18g00087 | 313 | PRINTS | Major intrinsic protein family signature | 236 | 258 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cmo18g00087 | 313 | PRINTS | Major intrinsic protein family signature | 273 | 293 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cmo18g00087 | 313 | PRINTS | Major intrinsic protein family signature | 52 | 71 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cmo18g00087 | 313 | PRINTS | Major intrinsic protein family signature | 203 | 221 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cmo18g00087 | 313 | PRINTS | Major intrinsic protein family signature | 121 | 145 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cmo18g00087 | 313 | PRINTS | Major intrinsic protein family signature | 158 | 177 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cmo18g00087 | 313 | Pfam | Major intrinsic protein | 46 | 290 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cmo18g00087 | 313 | PANTHER | AQUAPORIN-8 | 33 | 80 | IPR034294 | - | |
Cmo18g00087 | 313 | PANTHER | AQUAPORIN-8 | 105 | 313 | IPR034294 | - | |
Cmo18g00087 | 313 | ProSitePatterns | MIP family signature. | 139 | 147 | IPR022357 | - | |
Cmo18g00087 | 313 | CDD | MIP | 52 | 293 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cmo18g00087 | 313 | PANTHER | - | 33 | 80 | - | - | |
Cmo18g00087 | 313 | Gene3D | Glycerol uptake facilitator protein. | 35 | 299 | IPR023271 | - | |
Cmo18g00087 | 313 | PANTHER | - | 105 | 313 | - | - | |
Cmo18g00087 | 313 | SUPERFAMILY | Aquaporin-like | 45 | 301 | IPR023271 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo14g00225 | Cmo-Chr14:1039713 | Cmo18g00087 | Cmo-Chr18:583155 | 2.55E-83 | dispersed | |
Cmo15g01435 | Cmo-Chr15:9743965 | Cmo18g00087 | Cmo-Chr18:583155 | 1.73E-49 | dispersed | |
Cmo18g00087 | Cmo-Chr18:583155 | Cmo03g01241 | Cmo-Chr3:9569816 | 5.23E-34 | dispersed | |
Cmo13g00982 | Cmo-Chr13:8400229 | Cmo18g00087 | Cmo-Chr18:583155 | 7.98E-163 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo18g00087 | K09873 | - | csv:101208863 | 454.521 |