Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00087 ATGGCTTGGACGGAAAGGAGATGGGCCTCAGCGATATCAAAACAAGGAAGAGTTGGTGGTTCGTTTTCAGCTGTTTTTGCCGCCGCCGCCGCCATGCCGCCGAGACGATATGCCGTTGGACGGGCCGATGAGGCCACCAACCCCGACTCCGTTAGAGCCACCTTGGCTGAGTTCCTTTCCACTTTCATCTTCGTCTTTGCCGGAGAAGGCTCCGTCCTCGCTCTCGATAAAATTTTCAAGCCAGCAGACTATGGAAGCTACGGTCGTGGTGGTTATGGTTACAGCCATGGTCACGGTTACGGTCGAAGGGGAGGCGACACGGGCCGTGGGGCATCGGATTTAGTAGTAATAGCAATAGCGCATGCATTTGCGCTGTTCTCGGCCGTAGCGGCGAGTATCAACGTCTCCGGTGGGCATGTGAATCCTGCTGTTACATTTGGTGTACTTCTAGGAGGAAGGATTTCTCTTATCCGTGCATTCTTCTATTGGGTAGCTCAGATTTTGGGCGCCATTGTGGCTTCCCTGATCTTGAGACTCGCAACGGGTGGCATGAGGCCAATGGGGTTCTTCGTTTCATCAGGCATATCAGAACTGCACGGGTTTCTACTAGAGATATTGCTTACATTTGCTTTGGTGTACGTAGTCTACGCAACAGCAGTAGACCCGAAGAGGGGAAGTTTGGAAACAATAGCACCACTGGCAATCGGGTTAATAGTCGGGGCGAATATTCTAGTGGGTGGGGTATTTGATGGGGCCTGTATGAACCCGGCCCGGGCCTTTGGGCCGTCGTTAGTGGGCTGGAGATGGGACAACCATTGGATCTACTGGATTGGGCCCTTGCTGGGAGGTGGGCTTGCTGCACTTGTCTATGAGTATTTGGTGATTCCAGTTGAACCTCCTGTACATGCCCCCCACCAGCCTTTAGCTCCGGAAGATTACTAA 942 52.97 MAWTERRWASAISKQGRVGGSFSAVFAAAAAMPPRRYAVGRADEATNPDSVRATLAEFLSTFIFVFAGEGSVLALDKIFKPADYGSYGRGGYGYSHGHGYGRRGGDTGRGASDLVVIAIAHAFALFSAVAASINVSGGHVNPAVTFGVLLGGRISLIRAFFYWVAQILGAIVASLILRLATGGMRPMGFFVSSGISELHGFLLEILLTFALVYVVYATAVDPKRGSLETIAPLAIGLIVGANILVGGVFDGACMNPARAFGPSLVGWRWDNHWIYWIGPLLGGGLAALVYEYLVIPVEPPVHAPHQPLAPEDY 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 583155 585165 + CmoCh18G000870.1 Cmo18g00087 401860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00087 313 TIGRFAM MIP: MIP family channel proteins 56 290 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo18g00087 313 PRINTS Major intrinsic protein family signature 236 258 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo18g00087 313 PRINTS Major intrinsic protein family signature 273 293 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo18g00087 313 PRINTS Major intrinsic protein family signature 52 71 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo18g00087 313 PRINTS Major intrinsic protein family signature 203 221 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo18g00087 313 PRINTS Major intrinsic protein family signature 121 145 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo18g00087 313 PRINTS Major intrinsic protein family signature 158 177 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo18g00087 313 Pfam Major intrinsic protein 46 290 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo18g00087 313 PANTHER AQUAPORIN-8 33 80 IPR034294 -
Cmo18g00087 313 PANTHER AQUAPORIN-8 105 313 IPR034294 -
Cmo18g00087 313 ProSitePatterns MIP family signature. 139 147 IPR022357 -
Cmo18g00087 313 CDD MIP 52 293 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cmo18g00087 313 PANTHER - 33 80 - -
Cmo18g00087 313 Gene3D Glycerol uptake facilitator protein. 35 299 IPR023271 -
Cmo18g00087 313 PANTHER - 105 313 - -
Cmo18g00087 313 SUPERFAMILY Aquaporin-like 45 301 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g00225 Cmo-Chr14:1039713 Cmo18g00087 Cmo-Chr18:583155 2.55E-83 dispersed
Cmo15g01435 Cmo-Chr15:9743965 Cmo18g00087 Cmo-Chr18:583155 1.73E-49 dispersed
Cmo18g00087 Cmo-Chr18:583155 Cmo03g01241 Cmo-Chr3:9569816 5.23E-34 dispersed
Cmo13g00982 Cmo-Chr13:8400229 Cmo18g00087 Cmo-Chr18:583155 7.98E-163 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00087 K09873 - csv:101208863 454.521