Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00095 ATGATCTCTCTCTGTATTTCCAGCTGCTTGGTTTGCTGGAGCTTGACCGTTTCAGCAATGGGGAAGTCACCGGGGAAATGGATTAAAACTATCTTGTTTGGGAAGAAGTCTTCCAAATCTAATCTTTCTAAGAACAGAGAGAAAAGTGGAAACGAGAAGGAAGTATCGGTTTCTGTCAAGGCATCAGAGGCAACTTCTGTTATTACGCATACTGCAGCTTCGGAACCAACCCCAAATACCATTGAGACGAACGAAGTGGTGTCAAAAATTACCCACAATGAGGCAGCTAATGCGTCGTGTGAAAGATCGATATCAATTACAGGAAATCAAGATACAGAAATTCAAGGTTCTACGTGTCAAGATGCACCATCTGATCCTGAGAGAATCCGTAAAGAGGAGGCTGCAACTAAGGCTCAAGCTGCTTTTAGGGGTTATTTGGCTCGCCGAGCATTCCGGGCCCTCAAAGGTATTATTAGGTTGCAGGCCCTTATTCGTGGTCACTTAGTGAGGAGACAAGCTGTTGCTACTCTATGTTGTATGCTTGGAATTGTTAAGTTTCAGGCTATTGCTCGGGGAAGGAGAGTGAGGCTTTCTGATGTCGGTCTCGAAGCGCAAAACAAATATAGATTAGTGCAGCCACAGGAGCAGCTATTAGTGGCCCGTGCTGGAGTAAGTCTCTCGACACGTATGGCGAAGCTTTCAGCAAATGCTTTCACTATCAAGCTCGCTTCATCTACAACAGCCAAACCTCTACAAATCTATTTTGATAATGAAGATGAAAATTCAGCCTTGAAATGGTTAGAGCGCTGGTCAAATTCTCGATTCTGGAAACCGATTCCCCCAGTAAAAAAGGCTGCAGAGTTTAAATCTCAAAGAAGGCTGAGCACTGGTCAAACGGGCGAGGGACATACCGTGAGGTCAAAACGAACGAGGAGAGTTCCCACTGTAAACAATGACAGTACTGTCCAATCATCTGCAGAAGTCGAGAAACCTAAACGTACATTTAGGAAAGCTTCAAGTCACTCAGCTGCAGAGCAGGCTCAGGAGAATCCTCAGATGGAGCTTGAAAAGGTCAAGCGCAGTCTAAGAAAGGTCCATAACCCCGTTCTCGAGAATCCTACCCCAATTGAAGCAGATGTGGAGAAGCCGAAGGAAAGTTCGGATAAGGTTTCTAATGGTCTAGGCCGTGACATTTTGGCCAGAGGTACTAATAATTCTTCTGAGAAAATGAAAAAAGAGGCTATCTCAACGATACCCGTCCAGCCTGATTTGGAAACAACTCCTGAGCCGATACCGATAAAAGAGGTACTTAATGTAACTAATGGTGAGCCAGTTGTAGAATCACAGCCTTTGATTGAGGGCAGTGATAAAGATAAGAGCATAGCTGGTAATGAGGCTGCTGTGGAGACTAAGCCTTTGACAGAGAGCTACCCGAAAGATGCCATCAACCAATTATTAACAAATGGGGAATCAAACCATAAGGAAGATAACGCTAACAATGAGAACCCGAAATCTGGTAGGAAGGGCTCTACTCCAGCCAAGCAAGAACGAGTGGAGAACGGGTTGCAACACAGTCCAACCATACCTAGCTACATGGTAGCAACTGAATCTGCAAAGGCAAAACTAAGAGCACAAGGATCTCCAAGATTCGAACAGGAGAGTGAAAGAAATAACAACAATCGACGACATTCTTTACCGTCATCCACCAATGCTAAACTCAGCTCACCGTCTCCACGAACACAAAGACTTGTTCAAGCAGGCGGTAAAGGCGGAAACAAAAATGACAAGGCACACATGGGATCCAGAGATGGAAATGGTAAGCATTGGCTTTTCAGTGACTGGGACCATCTTCAAGTGGGGCTGCTGAGGCCTGTATGGTCTTATCTGATTATCCTTTCATCTTGGTTGTTTGAGTGCATGTACATCATAGGTTTTATGTTTTTTTCTTCACTGTTTTCTGTTCTTTTTCATCCCCAAGTTTTTTGTGCTTCCATTACACATTATTTAAGGTACCTCTGTTCTAATACAGATTGTTTATACTGTATCTGA 2049 44.07 MISLCISSCLVCWSLTVSAMGKSPGKWIKTILFGKKSSKSNLSKNREKSGNEKEVSVSVKASEATSVITHTAASEPTPNTIETNEVVSKITHNEAANASCERSISITGNQDTEIQGSTCQDAPSDPERIRKEEAATKAQAAFRGYLARRAFRALKGIIRLQALIRGHLVRRQAVATLCCMLGIVKFQAIARGRRVRLSDVGLEAQNKYRLVQPQEQLLVARAGVSLSTRMAKLSANAFTIKLASSTTAKPLQIYFDNEDENSALKWLERWSNSRFWKPIPPVKKAAEFKSQRRLSTGQTGEGHTVRSKRTRRVPTVNNDSTVQSSAEVEKPKRTFRKASSHSAAEQAQENPQMELEKVKRSLRKVHNPVLENPTPIEADVEKPKESSDKVSNGLGRDILARGTNNSSEKMKKEAISTIPVQPDLETTPEPIPIKEVLNVTNGEPVVESQPLIEGSDKDKSIAGNEAAVETKPLTESYPKDAINQLLTNGESNHKEDNANNENPKSGRKGSTPAKQERVENGLQHSPTIPSYMVATESAKAKLRAQGSPRFEQESERNNNNRRHSLPSSTNAKLSSPSPRTQRLVQAGGKGGNKNDKAHMGSRDGNGKHWLFSDWDHLQVGLLRPVWSYLIILSSWLFECMYIIGFMFFSSLFSVLFHPQVFCASITHYLRYLCSNTDCLYCI 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 647768 653225 - CmoCh18G000950.1 Cmo18g00095 401868

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00095 682 MobiDBLite consensus disorder prediction 314 328 - -
Cmo18g00095 682 ProSiteProfiles IQ motif profile. 131 159 IPR000048 GO:0005515
Cmo18g00095 682 MobiDBLite consensus disorder prediction 488 599 - -
Cmo18g00095 682 Pfam IQ calmodulin-binding motif 133 152 IPR000048 GO:0005515
Cmo18g00095 682 Pfam IQ calmodulin-binding motif 155 172 IPR000048 GO:0005515
Cmo18g00095 682 MobiDBLite consensus disorder prediction 546 560 - -
Cmo18g00095 682 Gene3D - 129 178 - -
Cmo18g00095 682 MobiDBLite consensus disorder prediction 398 412 - -
Cmo18g00095 682 Pfam Protein of unknown function (DUF4005) 511 593 IPR025064 -
Cmo18g00095 682 PANTHER IQ-DOMAIN 5-RELATED 20 600 - -
Cmo18g00095 682 MobiDBLite consensus disorder prediction 561 582 - -
Cmo18g00095 682 MobiDBLite consensus disorder prediction 352 366 - -
Cmo18g00095 682 ProSiteProfiles IQ motif profile. 155 177 IPR000048 GO:0005515
Cmo18g00095 682 MobiDBLite consensus disorder prediction 377 391 - -
Cmo18g00095 682 MobiDBLite consensus disorder prediction 516 532 - -
Cmo18g00095 682 MobiDBLite consensus disorder prediction 287 413 - -
Cmo18g00095 682 SMART iq_5 130 152 IPR000048 GO:0005515
Cmo18g00095 682 SMART iq_5 153 174 IPR000048 GO:0005515
Cmo18g00095 682 PANTHER PROTEIN IQ-DOMAIN 31 20 600 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00095 - - - csv:101214198 913.294
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo13g00963 Cmo18g00095 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g00095 Cmo-Chr18:647768 Cmo09g00343 Cmo-Chr9:1477225 1.10E-19 dispersed
Cmo13g00963 Cmo-Chr13:8331688 Cmo18g00095 Cmo-Chr18:647768 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g521 Blo04g00761 Blo16g00193 . . . . . . Cmo13g00963 Cmo18g00095 . . . . . Cpe20g00197 . . . . . . . . . . . . . . . Cone2ag0858 Cone16ag0154 . . . Csa01g00786 . Cme12g01757 . . Bda11g01691 . . . . . Sed08g2583 . . Cma13g00933 Cma18g00123 Car13g00773 Car18g00113 Cpe09g01069 . Bhi08g01405 Tan05g2090 Cmetu12g0772 . . . . Cla01g01430 Cam01g1498 Cec01g1538 Cco01g1583 Clacu01g1521 Cmu01g1413 Cre01g1331 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008895 1 3 2 1 1 1 2 0 1 0 0 0 2 1 1 2 0 2 1 0 1 1 1 1 1 0 1 4 0 3 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00095 Cmo_Chr18 FPKM 56.704403 51.412186 88.21579 77.201294 52.307442 68.993813 39.5704 140.654465 150.999084 127.75222