Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00098 ATGGCGGTTCGGAGGGTCTACGGCGGCGGCGACGACGGTGGTAGTATAAGTGGTGCTTCCAACCATACTGTTTTTCTTCAGAATCGTAAAGGGTCCTTTGCTTCTGAGCCTCTTAATGCTCTGTTCGTTTCTGGGTCGTCTTCTTCGACTTCCCCCTCTATGCTTGGTTCAAAATCCATGATAAGTTTCAAAGACATCCATGGACAAAACGGATCAACTAGACCGTTCTTTTGCTCATTCGATACCGAAGATAACGGAAACGAAGACTTGGATGATTACTTCCATCACCCTGAAAAGAAGAGGCGTTTAACTTCCGATCAAGTCCGATTCCTCGAGAAAAGTTTCGAGATCGATAACAAGCTCGAACTAGAAAGGAAAGTTCAATTAGCAAAGGACCTTGAGCTGCAGCCTCGTCAAGTTGCTATATGGTTTCAGAATCGTCGAGCTCGATGGAAAACGAAGCAGCTCGAGAAGGACTACGAGGCTCTTCAATCCAGCTATGGAAGCCTCAAGGTTGAGTATGAGAAGCTACTCAAGGAGAAGGATTCACTAAAAGCTAAGATTCTTGTCCTAACAGACAAGCTGCTACTCAAAGCAAAAGAAAAGGGTAGCTCTGTGGTGTCTGAAGTAGACAAATCAAGTGACATATTTGATACAGATAGCCCACTCGTAGAGCCTCGAGATTCTTCGTATATTTTCGATCCCGATCAGTCCGACTTATCACAAGACGAAGACGATAACACGGGAAAGAATCTATTGCCTACTTACGTCTTCCCGAAGCTCGAAGATGTCGATTACTTGGACCCGCCTGCAAGTGCTTGTAGTTTTGTGTTCCCCATTGATGAAGACACTGCTCTTTGGTCCTGGTCTTAG 873 45.36 MAVRRVYGGGDDGGSISGASNHTVFLQNRKGSFASEPLNALFVSGSSSSTSPSMLGSKSMISFKDIHGQNGSTRPFFCSFDTEDNGNEDLDDYFHHPEKKRRLTSDQVRFLEKSFEIDNKLELERKVQLAKDLELQPRQVAIWFQNRRARWKTKQLEKDYEALQSSYGSLKVEYEKLLKEKDSLKAKILVLTDKLLLKAKEKGSSVVSEVDKSSDIFDTDSPLVEPRDSSYIFDPDQSDLSQDEDDNTGKNLLPTYVFPKLEDVDYLDPPASACSFVFPIDEDTALWSWS 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 676252 678940 + CmoCh18G000980.1 Cmo18g00098 401871

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00098 290 Gene3D - 94 161 - -
Cmo18g00098 290 SMART HOX_1 97 158 IPR001356 GO:0003677
Cmo18g00098 290 Coils Coil 160 194 - -
Cmo18g00098 290 MobiDBLite consensus disorder prediction 218 248 - -
Cmo18g00098 290 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-54 26 288 - -
Cmo18g00098 290 ProSitePatterns 'Homeobox' domain signature. 129 152 IPR017970 GO:0000981|GO:0006355
Cmo18g00098 290 Pfam Homeobox associated leucine zipper 154 195 IPR003106 GO:0006355|GO:0043565
Cmo18g00098 290 CDD homeodomain 99 155 IPR001356 GO:0003677
Cmo18g00098 290 ProSiteProfiles 'Homeobox' domain profile. 94 154 IPR001356 GO:0003677
Cmo18g00098 290 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 26 288 IPR045224 GO:0003700
Cmo18g00098 290 SUPERFAMILY Homeodomain-like 83 156 IPR009057 -
Cmo18g00098 290 Pfam Homeodomain 99 152 IPR001356 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00098 - - - cmax:111490298 504.982
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo13g00956 Cmo18g00098 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo14g00654 Cmo-Chr14:3312300 Cmo18g00098 Cmo-Chr18:676252 1.42E-33 dispersed
Cmo15g00340 Cmo-Chr15:1583354 Cmo18g00098 Cmo-Chr18:676252 1.40E-35 dispersed
Cmo18g00098 Cmo-Chr18:676252 Cmo04g00899 Cmo-Chr4:4526610 9.49E-35 dispersed
Cmo05g00964 Cmo-Chr5:7757926 Cmo18g00098 Cmo-Chr18:676252 1.15E-47 transposed
Cmo13g00956 Cmo-Chr13:8306478 Cmo18g00098 Cmo-Chr18:676252 2.86E-140 wgd
Cmo18g00098 Cmo-Chr18:676252 Cmo04g02884 Cmo-Chr4:20528681 4.31E-34 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g499 Blo04g00758 Blo16g00197 . . . Bpe13g00275 . . Cmo13g00956 Cmo18g00098 . . . . . Cpe20g00203 . . . . . . . . . . . . . . . . Cone16ag0147 . Cone19ag0090 Lsi02g00316 Csa01g00793 Chy12g01323 Cme12g01748 . . . Bda14g00838 . Bpe15g00614 Bma03g00813 . . . . Cma13g00928 Cma18g00128 Car13g00767 Car18g00118 Cpe09g01065 . Bhi08g01418 Tan05g2080 . Lac10g0375 . . . Cla01g01422 Cam01g1489 Cec04g1119 Cco01g1575 Clacu01g1513 Cmu01g1405 Cre01g1323 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003231 3 2 3 3 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 3 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11471 PF00046 Homeodomain 3.20E-16 CL0123 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00098 Cmo_Chr18 FPKM 8.552909 9.304185 6.680039 7.511776 6.470936 5.92125 5.970272 4.74598 4.852468 4.746085