Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00100 ATGGCGTCTTCCTCCACCCATTCCCCGTTTACCACTTCCCCAAGCTTCCTTCCTACTCCAACCTTTACCCTTTTTATCATCACAATGAAACCCTCCTCTTCATTCTCGTCTAACTCAGCTGCGGCCTCCTCAATGTGCAAGGAATTTCAAATGGGCATGTTCGTTTTGGCTTTCTCATCCATTTTGCTATCGACCCTTTTCGGTTCTTGCACTCTCGCTCTTACCCCAGATGGCCTAGCGTTGTTGGAAATTAGAAGCGCTTTTAATGATAGCAAAAACCTCCTTGGTGATTGGGAAGCTTCTGATGAGTCGCCTTGCAAATGGACTGGTATATCTTGTCACCTTGAGGACCAACGGGTCAGCTCAATTAACTTACCTTACATGCAGCTAGGAGGGATTATTTCTCCTAGCATTGGTAAACTCAGTAGATTACAGAGACTGGCACTTCACCAAAATGGCTTACATGGATATATTCCTAATGAAATCACGAAATGTATTCAGCTAAGAGCTCTGTATTTGAGGTCTAATTATCTTCAAGGTGGCATACCATCAGATATTGGGAGCCTTTCTGCTCTTACAATACTGGACTTCTCAGGCAATTCGTTAAAGGGTGCTATTCCATCATCCATTGGTCGTCTCTCGCTTCTGCGCCATCTGAATTTGTCCACAAACTTTTTCTCTGGGGAGATACCTGATTTTGGAGTTCTAAGCACATTTGGAAGCAATTCGTTTGTTGGCAATCTAGATCTCTGTGGTCATCAAGTTAACAAGGCCTGCCAAACCTCGTTGGGATTCCCTGCAGTGTTGCCCCATGCTGAAAGTGATGAAGCTTCAGTGCCTGTGAAAAGACCTTCACACTACATCAAAGGAGTATTAATTGGTGCAGTGTCCACCATGGGAGTTGCATTTGTAGTACTCGTTCCATTCTTGTGGATCCGTTGGCTATCGAAGAAGGAACGAGCTGCGAAACGATACACAGAAGTCAAAAAACAAGTGGTTCACGAACCAAACACAAAACTTATTACTTTTCACGGCGACCTACCGTACCCGTCATGTGAGATCATCGAAAAGCTGGAATCACTAGAGGAAGAAGACGTTGTTGGTTCAGGAGGATTCGGGATCGTGTACCGAATGGTCATGAACGATTGTGGGACATTTGCTGTTAAAAAGATTGATGGAAGCAGAAAAGGTTCTGACCAAGTGTTTGAGAGAGAGTTGGAGATTCTGGGCTGCATCAAACATATAAACTTGGTCAATTTGAGGGGTTATTGTAGTCTTCCAACTTCAAAGCTTCTTATCTATGACTTCCTTGCAATGGGCAGCTTAGATGATTTTCTGCATGAACAGGAATCAGAAAGACGAGCTTTGGATTGGCGAGCTCGTTTAAAGGTAGCATTGGGCTCTGCTAGGGGGATTGCATATTTGCATCATGATTGTAGTCCGAAGATCGTGCATCGTGACATTAAATCGAGCAACATTCTTCTTGACGAGAACTTGGAGCCTCATGTATCTGACTTTGGACTAGCCAAGCTTTTGGTTGATGAGGATTCTCATGTCACAACTGTTGTTGCTGGAACATTTGGTTATTTGGCTCCAGAGTATCTACAAAGTGGGAGGGCGACTGAAAAATCAGATGTTTATAGCTTTGGAGTTTTGTTACTCGAGCTGGTGACTGGGAAGAGACCAACTGATCCATCATTTGTAAAGAGAGGCTTGAATGTTGTTGGTTGGATGCACACATTATTGGGAGAAAACAAACTGGATGAGATAGTCGACAAAAGGTGCAAGGACGTCGATGCCGATACAGTCGAAGCAATCCTTGAAATAGCAGCCAAATGCACGGATGCCGACCCAGACAATCGGCCATCGATGAGTCAAGTTTTGCAGTTTCTAGAGCAAGAAGTCATGTCACCATGTCCTAGTGATATCTATGAATCATGGAGTTTGATGGTTAGCCTAGCTCTGTCTTCACTGGGGCTGACAAACCCATCTGCAAGAGAATCTGTATCAGACTCCTGCCCCCCTCGGCCTCTGTGTTCTTCAGAACTTTCCCAAATCCCCTTTGTCAGATTCACGTCTGAATTTACATTGCATGCCATTATTACTCTGATTATATTCTGTTTCTTTTCCATTTCTATATCGCCGACACTTTTTGCGTCTTTTGTCGGCCAAACATCCAAGATAACGTTTGGTTGA 2196 43.99 MASSSTHSPFTTSPSFLPTPTFTLFIITMKPSSSFSSNSAAASSMCKEFQMGMFVLAFSSILLSTLFGSCTLALTPDGLALLEIRSAFNDSKNLLGDWEASDESPCKWTGISCHLEDQRVSSINLPYMQLGGIISPSIGKLSRLQRLALHQNGLHGYIPNEITKCIQLRALYLRSNYLQGGIPSDIGSLSALTILDFSGNSLKGAIPSSIGRLSLLRHLNLSTNFFSGEIPDFGVLSTFGSNSFVGNLDLCGHQVNKACQTSLGFPAVLPHAESDEASVPVKRPSHYIKGVLIGAVSTMGVAFVVLVPFLWIRWLSKKERAAKRYTEVKKQVVHEPNTKLITFHGDLPYPSCEIIEKLESLEEEDVVGSGGFGIVYRMVMNDCGTFAVKKIDGSRKGSDQVFERELEILGCIKHINLVNLRGYCSLPTSKLLIYDFLAMGSLDDFLHEQESERRALDWRARLKVALGSARGIAYLHHDCSPKIVHRDIKSSNILLDENLEPHVSDFGLAKLLVDEDSHVTTVVAGTFGYLAPEYLQSGRATEKSDVYSFGVLLLELVTGKRPTDPSFVKRGLNVVGWMHTLLGENKLDEIVDKRCKDVDADTVEAILEIAAKCTDADPDNRPSMSQVLQFLEQEVMSPCPSDIYESWSLMVSLALSSLGLTNPSARESVSDSCPPRPLCSSELSQIPFVRFTSEFTLHAIITLIIFCFFSISISPTLFASFVGQTSKITFG 731
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 681892 689622 - CmoCh18G001000.1 Cmo18g00100 401873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00100 731 PANTHER REPEAT FAMILY PROTEIN, PUTATIVE, EXPRESSED-RELATED 84 643 - -
Cmo18g00100 731 Gene3D Ribonuclease Inhibitor 76 261 IPR032675 -
Cmo18g00100 731 Pfam Protein kinase domain 362 629 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00100 731 Pfam Leucine rich repeat 167 224 IPR001611 GO:0005515
Cmo18g00100 731 Gene3D Phosphorylase Kinase; domain 1 320 436 - -
Cmo18g00100 731 Pfam Leucine rich repeat N-terminal domain 76 113 IPR013210 -
Cmo18g00100 731 ProSiteProfiles Protein kinase domain profile. 361 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00100 731 SUPERFAMILY L domain-like 76 255 - -
Cmo18g00100 731 Gene3D Transferase(Phosphotransferase) domain 1 437 640 - -
Cmo18g00100 731 SMART serkin_6 361 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00100 731 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 84 643 - -
Cmo18g00100 731 ProSitePatterns Protein kinases ATP-binding region signature. 367 390 IPR017441 GO:0005524
Cmo18g00100 731 ProSitePatterns Serine/Threonine protein kinases active-site signature. 483 495 IPR008271 GO:0004672|GO:0006468
Cmo18g00100 731 SUPERFAMILY Protein kinase-like (PK-like) 342 632 IPR011009 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00196 Cmo18g00100 CCT
Cmo11g00145 Cmo18g00100 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g00625 Cmo-Chr4:3105407 Cmo18g00100 Cmo-Chr18:681892 0 dispersed
Cmo09g00742 Cmo-Chr9:3721073 Cmo18g00100 Cmo-Chr18:681892 0 dispersed
Cmo18g00100 Cmo-Chr18:681892 Cmo07g00173 Cmo-Chr7:916091 2.40E-07 dispersed
Cmo10g00196 Cmo-Chr10:878673 Cmo18g00100 Cmo-Chr18:681892 0 wgd
Cmo11g00145 Cmo-Chr11:731029 Cmo18g00100 Cmo-Chr18:681892 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75033 PF00069 Pkinase 2.20E-47 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00100 - - cmax:111490257 1228.0