Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00105 ATGGGGCGTTTCATTGGGTTCATCCTCTTCCTCTGTGGGCTTCTGCTGCTTGTTCATCCTACAGTTTCACTTCCCTTGTGCTCTGATTCAACGGCGCCCTCTACTTTGAACTCTACATTGGAGTTTTGTCCTTATAAGGGGAGTGTTTGCTGCAACTCTACACAAGATGGCAATATACAGAGACAATTCCAAGAGATGAACATTTCTGATCCTGCCTGTTCTTCCCTTGTTAAATCCATTGTCTGTGCGAGGTGTGATCCATTTTCGGGAGATCTATATATAGTCAATTCCACGCCTAGATCAGTTCCTCTTCTTTGCAACTCAACTTCAGAAAATTCACCACAATCCAACCAAGCAGCCACTGACTTCTGCTCTACAGTATGGGATACATGCCAAAATATCACCATTGTCAACTCCCCCTTTGCCCCTTCTTTACAGGGTCGAGCTGGAGTACCGACTAACTCGAGTACTAGCAAGCTCTCGGATCTCTGGCTTTCGAAAACCGACTTTTGCAATGCATTTGGAGGATCATCAACTGAAGAATCAGTCTGCTTTGTTGGTGAACCTGTTTCCCTTAACAATACCAAACTTCCTAGCCCTCCAGATGGCCTATGTCTTGAGAAAATTGGAAATGGATCTTACCTGAACATGGTGGCTCATCCTGATGGATCTAATCGTGCATTCTTCTCTAACCAAGCAGGCAAAGTTTGGTTGGCAACTATTCCCAAGATGGGGTCAGGAGGAGTGTTGGAGCTCGACGAATCGAAACCGTTCGTAGATTTAACCGATGTAGTTAACTTAGATACTCAATTTGGCATGATGGGGCTTGCATTTCATCCAAATTTTGCACAAAATGGAAGGTTTTTTGCTTCTTTCAATTGTGACAAAGTTAAGTGGCCAGGGTGTTCTGGAAGATGTTCTTGTAATTCTGACGTTAATTGTGATCCTTCTAAACTACCATCTGATAGCGGATCCCAACCGTGTCAGCATCAAAGTGTTGTTGCAGAGTACACTGTGAACGGCAGTGCATCCCAGCCTTCATTGGCAACAACTGCAAAACCAACAGAAGTGAGAAGAATAATCACAATTGGTCTTCCTTTTACCTCTCGTCATGCAGGACAGATACTCTTTGGGGAAGATGGGTACCTTTACTTCATGATGGGCGATGGCGGCGGTCAAGGTTCAGAAGACATTAATAAACTTGATCTATGGGGAAACTATTCTATTCCTAAAGACAACCCATTTGTTGAAGATCAAGGTGCACTGCCAGAGATATGGGCTTACGGATTGAGAAATCCCTGGCGATGCAGTTTCGATTCAGAAAGACCTTCCTACTTCATGTGTGGAGATGTTGGGCAGGATCGATTCGAAGAGGTGAACATCATCTCAAAGGGTGGAAACTATGGCTGGAGTGTTTATGAGGGTCCTCTTTTGTTCGTTCCGAATTCATCCCCTAAAGAATCCACACCTATAGATGCCATAAATCCAATCTTTCCTGTGATGGGCTACAACCATTCTTCCATAAACAAGAACACAGGTTCGGCATCGATAACAGGGGGTTATTTCTATCGGTCTAACACCGATCCGTGTTTGTACGGAAGGTACTTGTATGCAGATTTGTATGCTTCTGCTATTTGGACAGGAACTGAAACCCCAAATAACAGTGGGAACTTTACCACAAATGATATTCCTTTCAGTTGTGCTCCTGATTCTCCCATACCTTGTAGTTCCACTCCAGGAAGTCCTCTTCCAGCTTTGGGCTATGTCTTTTCATTTGGTGAGGACAATGACAAGGACATTTACATTCTAACCAGCAGCGGAGTCTACAGTTGGAAGCTTGAGTCCAACGCCGTCGCCTCCGTCTCGAGCAAGTCGGTCAACGAACTCATGGAGCTGCCTGGTGCTCCTACTGCTGCTGCTTTTCACTTGTGGCTGACTACATGGTTGATATGGAAGGGCACTGGATTTGTTTTTGGTGAAGCTCTTAATTGTTGTTGTGGAACCTATAGAATCTGCAATGGCTTGGGTAAGGATGGGAAAACATCTTGGAAGTCTAAAGAGGAGACAATATCGATAAGCAGTGGTGGCTTGGGCGAGGATGTGGAAACCTTTCAGAAGTTCAAAGAGAACAATATCTATTAG 2142 44.49 MGRFIGFILFLCGLLLLVHPTVSLPLCSDSTAPSTLNSTLEFCPYKGSVCCNSTQDGNIQRQFQEMNISDPACSSLVKSIVCARCDPFSGDLYIVNSTPRSVPLLCNSTSENSPQSNQAATDFCSTVWDTCQNITIVNSPFAPSLQGRAGVPTNSSTSKLSDLWLSKTDFCNAFGGSSTEESVCFVGEPVSLNNTKLPSPPDGLCLEKIGNGSYLNMVAHPDGSNRAFFSNQAGKVWLATIPKMGSGGVLELDESKPFVDLTDVVNLDTQFGMMGLAFHPNFAQNGRFFASFNCDKVKWPGCSGRCSCNSDVNCDPSKLPSDSGSQPCQHQSVVAEYTVNGSASQPSLATTAKPTEVRRIITIGLPFTSRHAGQILFGEDGYLYFMMGDGGGQGSEDINKLDLWGNYSIPKDNPFVEDQGALPEIWAYGLRNPWRCSFDSERPSYFMCGDVGQDRFEEVNIISKGGNYGWSVYEGPLLFVPNSSPKESTPIDAINPIFPVMGYNHSSINKNTGSASITGGYFYRSNTDPCLYGRYLYADLYASAIWTGTETPNNSGNFTTNDIPFSCAPDSPIPCSSTPGSPLPALGYVFSFGEDNDKDIYILTSSGVYSWKLESNAVASVSSKSVNELMELPGAPTAAAFHLWLTTWLIWKGTGFVFGEALNCCCGTYRICNGLGKDGKTSWKSKEETISISSGGLGEDVETFQKFKENNIY 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 726920 733135 + CmoCh18G001050.1 Cmo18g00105 401878

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00105 713 Pfam Glucose / Sorbosone dehydrogenase 226 545 IPR012938 -
Cmo18g00105 713 PANTHER HEDGEHOG-INTERACTING PROTEIN 399 628 - -
Cmo18g00105 713 PANTHER HEDGEHOG-INTERACTING PROTEIN 7 395 - -
Cmo18g00105 713 SUPERFAMILY Soluble quinoprotein glucose dehydrogenase 203 543 IPR011041 -
Cmo18g00105 713 Gene3D - 210 613 IPR011042 -
Cmo18g00105 713 PANTHER HIPL1 PROTEIN-LIKE 399 628 - -
Cmo18g00105 713 PANTHER HIPL1 PROTEIN-LIKE 7 395 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00105 - - - csv:101216524 1139.79
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo13g00945 Cmo18g00105 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo13g00945 Cmo-Chr13:8261273 Cmo18g00105 Cmo-Chr18:726920 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g479 . . . . . Bpe13g00269 Bma06g00190 . Cmo13g00945 Cmo18g00105 . . . . . Cpe20g00036 . . . . . . . . . . . . . . . Cone2ag0871 Cone16ag0139 . . Lsi02g00328 Csa01g00802 Chy12g01314 Cme12g01738 . . Bda11g01682 Bda14g00833 . Bpe15g00618 Bma03g00807 . Sed08g2562 . . Cma13g00921 Cma18g00134 Car13g00759 Car18g00126 Cpe09g01058 . Bhi08g01429 Tan05g2068 . Lac10g0392 . . . Cla01g01414 Cam01g1480 Cec01g1519 Cco01g1565 Clacu01g1503 Cmu01g1396 Cre01g1316 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003165 2 3 3 3 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 5 3 2 51
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00105 Cmo_Chr18 FPKM 3.641283 4.73731 3.356547 3.115093 9.040656 9.034894 10.443121 3.948634 4.749487 4.789029