Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00109 ATGAGTGCAGGGATGAGGAAGAAGAAGAATCCATGGGAGACTGATAGCTACCTTAACAATATGATAATGGATATGGATGCCGCGATGTCAAATCAGGGTTTTTCCACTGATTTTATACTCCCTGTTGTTACAGTTGCTAGAGATTCAGGGAGACTCAATAAAACCCCATTCATGTCTTCTCTTTTAGAACCTGAAAACTCTCCCAATATTTTCATACCTGAAGAATGGTCCGAGGCTGCAGAGTCCATAGTTTTTTATTCTCCAACTTCACCGCCTCCTGTTGTTCTTATCTGCGGTGCCAAAAACTGTGGCAAAAGTACTTTCTCACGCCACCTTCTCAATGTTTTCCTTCAAAGGTATAAAAAAGTGGTTTACCTAGATTCAGATGTTGGACAGCCTGAGTTTACTCCACCGGGTTTTCTATCCCTCACCGTGGTTGACAAACTAACGCCAGATTTGTCGACTCCATGCCTAAAGACGCCAGAGAGATGTTTTTTCTTTGGTGATGTATCCTCAAAAAGAGATCCAACAGCTTATTTAAGTTATGCAAGTTGCTTGTACGATTATTACTGCAAAGAGTACCATTCGATTAACAAGACTCAAGAACTTGCAAAGATTGAATTGCCTCTTATTGTTAATACACCTGGCTGGGTAAAAGGTGTCGGTTACGAGATATTGGTAGATATGTTAAAATACATTGCTCCATCCTATGTAGTCAAAATAAATATATCTGCTGAGAGTAAGAACCTTCCGGCCGGGGAGTTTTGGTTAGAAGAGGAGGAAGATTTTGGGTCAACCAATCTAATAGAAATACGTTCTGCTCGGCAAGATGCGTTTAATAGATCGATATTAGTACAAAAGGATGCAAGTCTCATGCGAGATTTGCGTATAATGGCGTATTTTAGACAGTGCTTTCCTAAAGATTGCAGTATTACCACAATTAAAGAGCTTGCACATGCACTGGCATCTCACCCTCCTTATCAAGTTCCAATATCAAGCATTAAGATTAGACACCTACACTGTCAGGTCCCAAGCGATCAGATCTTCTATAGTCTGAATGCGACAATCGTCGGCTTAGCTGAATCCTCCAAAACTTCTGAAAATCTGTCATGGTGTGTTGGCCTTGGAATCATTAGGGGCATTGATACATCTAAAGGTCTGCTATATGTTATCACACCCGTCGCCCATGGCACATTGGAAAAGGTTGACCTTCTTTTACAGGGTTTTATCCAAATCCCCTCATGTTTGTTGCAGGTTAAGGGATGCATATCTCCTTACATGTCTGCAAACATTCTGCCCACGAGCTAG 1308 41.28 MSAGMRKKKNPWETDSYLNNMIMDMDAAMSNQGFSTDFILPVVTVARDSGRLNKTPFMSSLLEPENSPNIFIPEEWSEAAESIVFYSPTSPPPVVLICGAKNCGKSTFSRHLLNVFLQRYKKVVYLDSDVGQPEFTPPGFLSLTVVDKLTPDLSTPCLKTPERCFFFGDVSSKRDPTAYLSYASCLYDYYCKEYHSINKTQELAKIELPLIVNTPGWVKGVGYEILVDMLKYIAPSYVVKINISAESKNLPAGEFWLEEEEDFGSTNLIEIRSARQDAFNRSILVQKDASLMRDLRIMAYFRQCFPKDCSITTIKELAHALASHPPYQVPISSIKIRHLHCQVPSDQIFYSLNATIVGLAESSKTSENLSWCVGLGIIRGIDTSKGLLYVITPVAHGTLEKVDLLLQGFIQIPSCLLQVKGCISPYMSANILPTS 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 751321 756361 - CmoCh18G001090.1 Cmo18g00109 401882

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00109 435 PANTHER CLEAVAGE/POLYADENYLATION FACTOR IA SUBUNIT CLP1P 65 424 IPR045116 GO:0006396|GO:0051731
Cmo18g00109 435 PANTHER OS01G0354700 PROTEIN 65 424 - -
Cmo18g00109 435 Pfam mRNA cleavage and polyadenylation factor CLP1 P-loop 99 302 IPR032319 -
Cmo18g00109 435 Gene3D - 71 305 IPR027417 -
Cmo18g00109 435 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 92 143 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00109 K06947 GRC3, NOL9; polynucleotide 5'-hydroxyl-kinase GRC3/NOL9 [EC:2.7.1.-] - csv:101217238 696.427
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02881 Cmo-Chr4:20508856 Cmo18g00109 Cmo-Chr18:751321 3.39E-10 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g466 . . . . . . . . . Cmo18g00109 . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00338 Csa01g00809 . . . . . . . . . . Sed08g2553 . . . Cma18g00139 . . . . Bhi08g01437 Tan05g2057 Cmetu12g0118 Lac10g0399 Hepe07g2264 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011454 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 2 3 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00109 Cmo_Chr18 FPKM 11.86159 12.152028 12.680408 13.489666 15.891293 16.387417 16.957563 20.159117 19.605473 18.365036