Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00111 ATGATGTTGAAACCGCCACGAGGTAGCATAGCTCGTTGTCTTGATATCTTCAAGAATAGGCTCTCACTCGATGACTTCAGCATGCGTCAGATATGGTGCAAGCCGAACGAGTACATCTATGCCATCGTGATCAGCTTGCTCGGCTGCGAAGGATTGCTAGAGAGCTGTAGCAAGATATTCGATGAAATGTCGAGCCAGGGCGAGATACGTAGCGTGTTTTCTTATACCGCTTTGATAAATGCCTACGGGCGCAATGACTATGATAGAGGGAGGGATCGTCCCGGAGGTAACAACATACAGTTTATTGTTCTAACATTTGAAAAATTAGGGTCCGTTAAGGAGGCAATGGATGTGTTTAAGCAGATGCAAGCAGCAGGATGCGTGCCAAATTCGTCCACTTACAGCATTCTGTTGAATCTATATGGGAAGCATGGGAGGTATGATGATGTTCGAGAGCTTTTCCTTGAAATGAAAGAGAGTAGTGCTGAGCCAGATGCAACTACTTACAACATTCTCATACGAGTATTTGGAGAGGGTGGATACTTCAAGGAGGTTGTAGCTTTGTTTCATGACTTTCTGGATGAAAAGATTGACCCAAATATCGAAACATACAAGGGGTTAGTATTTGCTTGTGGAAAGGGAGGGTTGCATGAGGATGCCAAGAAAATTTTACTTCGCATGAATGAGAAAGGAATAGTTCCAAATTCTAATGCGTATAGTGTTGAGGATTATTGGGAGTGA 741 43.45 MMLKPPRGSIARCLDIFKNRLSLDDFSMRQIWCKPNEYIYAIVISLLGCEGLLESCSKIFDEMSSQGEIRSVFSYTALINAYGRNDYDRGRDRPGGNNIQFIVLTFEKLGSVKEAMDVFKQMQAAGCVPNSSTYSILLNLYGKHGRYDDVRELFLEMKESSAEPDATTYNILIRVFGEGGYFKEVVALFHDFLDEKIDPNIETYKGLVFACGKGGLHEDAKKILLRMNEKGIVPNSNAYSVEDYWE 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 769494 771306 - CmoCh18G001110.1 Cmo18g00111 401884

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00111 246 Gene3D Tetratricopeptide repeat domain 97 245 IPR011990 GO:0005515
Cmo18g00111 246 PANTHER PLASTID TRANSCRIPTIONALLY ACTIVE CHROMOSOME 2-LIKE PROTEIN 106 240 - -
Cmo18g00111 246 PANTHER PLASTID TRANSCRIPTIONALLY ACTIVE CHROMOSOME 2-LIKE PROTEIN 29 86 - -
Cmo18g00111 246 PANTHER PLASTID TRANSCRIPTIONALLY ACTIVE CHROMOSOME 2-LIKE PROTEIN 106 240 - -
Cmo18g00111 246 PANTHER PLASTID TRANSCRIPTIONALLY ACTIVE CHROMOSOME 2-LIKE PROTEIN 29 86 - -
Cmo18g00111 246 Pfam PPR repeat family 136 175 IPR002885 -
Cmo18g00111 246 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 130 164 IPR002885 -
Cmo18g00111 246 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 200 234 IPR002885 -
Cmo18g00111 246 Pfam Pentatricopeptide repeat domain 188 240 IPR002885 -
Cmo18g00111 246 Gene3D Tetratricopeptide repeat domain 7 93 IPR011990 GO:0005515
Cmo18g00111 246 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 165 199 IPR002885 -
Cmo18g00111 246 Pfam PPR repeat 73 86 IPR002885 -
Cmo18g00111 246 Pfam PPR repeat 39 67 IPR002885 -
Cmo18g00111 246 Pfam PPR repeat 108 127 IPR002885 -
Cmo18g00111 246 TIGRFAM PPR: pentatricopeptide repeat domain 168 200 IPR002885 -
Cmo18g00111 246 TIGRFAM PPR: pentatricopeptide repeat domain 203 236 IPR002885 -
Cmo18g00111 246 TIGRFAM PPR: pentatricopeptide repeat domain 38 68 IPR002885 -
Cmo18g00111 246 TIGRFAM PPR: pentatricopeptide repeat domain 108 131 IPR002885 -
Cmo18g00111 246 TIGRFAM PPR: pentatricopeptide repeat domain 133 166 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00111 - - - mcha:111008838 268.47
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g00111 Cmo-Chr18:769494 Cmo19g00578 Cmo-Chr19:6565111 4.60E-07 dispersed
Cmo13g00940 Cmo-Chr13:8235433 Cmo18g00111 Cmo-Chr18:769494 8.17E-13 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g671 . . . . . . Bma06g00193 . . Cmo18g00111 . . . . . Cpe20g00216 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bhi08g01440 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0020088 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 4
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00111 Cmo_Chr18 FPKM 1.243808 1.981379 1.136783 0.783586 8.322446 9.286395 7.07882 0.64781 1.028287 0.622601