Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00114 ATGATCTGCGGCGGAGGCGGAGACGGTGACGGTGACGGTGACACTGACGACTTCATGGCGGCTCTGCCATCCTCTTCTGCGTTACCGGATTCTTCGTCTTCCAGACATCACACTTACAGTAGGAAGCAGAAATCCCTCGGTCTTTTGTGCTCAAATTTTTTGAGCTTGTATAATCATGATGAAGTTCACTCGATTGGGCTTGATGATGCTGCATCGCGATTAGGTGTGGAAAGGCGGCGGATCTATGATATTGTGAATGTCTTGGAGAGCGTCGGGGTTCTCTCCAGAAAGGCGAAAAATCAGTACAGTTGGAATGGGTTTGGGGCAATTCCTAAGGCCTTGCAAGATCTTAAGGAGGAAGGGTTGAAGGATAATTGCAGCGCATCTGATGGCACCGATTATGCAAAAGTCTCAGATGATGAAGATGACGATGAAAGACTTTCCAATCCAACCGGAAGCCAAAACTCAACTGCCACCATGCCCAAATCTTCATCATCTTTAAAAGCCGACAATAGGAGGGAAAAATCATTGGCGCTTCTGACTCAAAATTTTGTTAAGCTATTTATTTGCAGTCATGTGAATATGATTTCCCTTGATGAAGCTGCGAGGCTCTTATTAGGAGATGGCCACAATTCATCAATAATGAGAACAAAAGTGAGGCGGCTATACGACATTGCAAATGTTCTGTCTTCTATGAATCTAATTGAGAAGACGCATACAACTGACACGAGAAAGCCAGCGTTTAGGTGGTTGGGAGTAAGGGGTAAAGTCAAGAATGAGCCTATTGTTCTTCCAGAATCGAAAAAAAGGGCATTTGGAACGGATGTAACAAATGTCAGTTATAAGAAAACTAAGACTGAAAATTCAGCCTATCCGAGTTTAAATCATTGCCTTAACATTCAAAAGCCAGTGCCGTGCGAGAATTCATCACAAGATGACAGCCAGAACAGTCAGGATCAGGAATGTGAGCGAACTTCCAAGAGCTATCAATTTGGACCATTTGCTCCTGTAACAGTAGCTAAAGTTGGTGTCTTAGACAATAACAACATGAGGCGAACTCATGATTGGGAAAGCCTTTCCTCGACATTCCGCCCTCAGTATCACAACCAAGCCTTAAAAGAACTTTTCTCCCATTACGTGGAAGCTTGGAAATCATGGTATTCTGAAGCAGTGAAGAAACCTATACAAATATCTTGA 1197 43.53 MICGGGGDGDGDGDTDDFMAALPSSSALPDSSSSRHHTYSRKQKSLGLLCSNFLSLYNHDEVHSIGLDDAASRLGVERRRIYDIVNVLESVGVLSRKAKNQYSWNGFGAIPKALQDLKEEGLKDNCSASDGTDYAKVSDDEDDDERLSNPTGSQNSTATMPKSSSSLKADNRREKSLALLTQNFVKLFICSHVNMISLDEAARLLLGDGHNSSIMRTKVRRLYDIANVLSSMNLIEKTHTTDTRKPAFRWLGVRGKVKNEPIVLPESKKRAFGTDVTNVSYKKTKTENSAYPSLNHCLNIQKPVPCENSSQDDSQNSQDQECERTSKSYQFGPFAPVTVAKVGVLDNNNMRRTHDWESLSSTFRPQYHNQALKELFSHYVEAWKSWYSEAVKKPIQIS 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 783508 787986 + CmoCh18G001140.1 Cmo18g00114 401887

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00114 398 SUPERFAMILY Winged helix DNA-binding domain 40 104 IPR036390 -
Cmo18g00114 398 Pfam E2F/DP family winged-helix DNA-binding domain 42 106 IPR003316 GO:0005667|GO:0006355
Cmo18g00114 398 Pfam E2F/DP family winged-helix DNA-binding domain 174 252 IPR003316 GO:0005667|GO:0006355
Cmo18g00114 398 Gene3D - 36 109 IPR036388 -
Cmo18g00114 398 Gene3D - 167 254 IPR036388 -
Cmo18g00114 398 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 24 390 - -
Cmo18g00114 398 MobiDBLite consensus disorder prediction 1 37 - -
Cmo18g00114 398 MobiDBLite consensus disorder prediction 149 166 - -
Cmo18g00114 398 MobiDBLite consensus disorder prediction 304 326 - -
Cmo18g00114 398 SUPERFAMILY Winged helix DNA-binding domain 174 253 IPR036390 -
Cmo18g00114 398 PANTHER TRANSCRIPTION FACTOR E2F 24 390 IPR015633 GO:0000978|GO:0006357
Cmo18g00114 398 SMART E2F_TDP_2 172 252 IPR003316 GO:0005667|GO:0006355
Cmo18g00114 398 SMART E2F_TDP_2 41 106 IPR003316 GO:0005667|GO:0006355
Cmo18g00114 398 MobiDBLite consensus disorder prediction 124 169 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00114 K09391 E2F7_8; transcription factor E2F7/8 - csv:101219210 701.819
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo10g00164 Cmo18g00114 CCT
Cmo13g00935 Cmo18g00114 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g00114 Cmo-Chr18:783508 Cmo07g00858 Cmo-Chr7:4049258 3.27E-11 dispersed
Cmo10g00164 Cmo-Chr10:743630 Cmo18g00114 Cmo-Chr18:783508 1.20E-07 wgd
Cmo13g00935 Cmo-Chr13:8209724 Cmo18g00114 Cmo-Chr18:783508 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g681 Blo04g00746 Blo16g00207 . . . Bpe13g00264 Bma06g00196 . Cmo13g00935 Cmo18g00114 Cma10g00152 . Car10g00143 . Sed08g0171 Cpe20g00223 . Bhi02g00386 Tan09g2196 Cmetu02g0961 . Hepe09g0165 . . Cla06g01632 Cam06g1815 Cec06g1865 Cco06g1871 Clacu06g1773 Cmu06g1715 Cre06g2535 . Cone16ag0131 . . Lsi02g00346 Csa01g00818 Chy12g01298 Cme12g01723 . . . Bda14g00825 . . Bma03g00799 . Sed08g2543 Cmo10g00164 . Cma13g00908 Cma18g00144 Car13g00748 Car18g00138 Cpe09g01047 Cpe18g00824 Bhi08g01449 Tan05g2045 . . . . . Cla01g01399 Cam01g1461 Cec01g1502 . Clacu01g1485 Cmu01g1380 Cre01g1296 Lsi06g01514 Csa01g00185 Chy02g02548 Cme02g01934
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo18g00114 CCT,CST 18 393 E2F-DP Transcription Factor Family AT3G48160 54.6 2.3e-103 373.2
Cmo04g00407 . 83 286 E2F-DP Transcription Factor Family AT5G02470 55.1 1.5e-59 227.3
Cmo16g00284 . 121 324 E2F-DP Transcription Factor Family AT5G02470 54.6 9.7e-59 224.6
Cmo03g01117 CST 11 460 E2F-DP Transcription Factor Family AT2G36010 52.3 1.6e-111 400.6
Cmo07g00858 CST 353 796 E2F-DP Transcription Factor Family AT2G36010 51.6 8.4e-108 388.3
Cmo02g01350 CST 21 454 E2F-DP Transcription Factor Family AT2G36010 51.0 7.9e-106 381.7
Cmo20g00168 CST 21 261 E2F-DP Transcription Factor Family AT2G36010 56.1 1.7e-63 241.1
Cmo02g01350 CST 24 461 E2F-DP Transcription Factor Family AT5G22220 52.5 7.3e-101 365.2
Cmo03g01117 CST 50 450 E2F-DP Transcription Factor Family AT5G22220 50.1 1.4e-88 324.3
Cmo20g00168 CST 10 261 E2F-DP Transcription Factor Family AT5G22220 60.2 8.8e-62 235.3
Cmo12g00363 CST 153 409 E2F-DP Transcription Factor Family AT1G47870 52.9 3.8e-66 249.6
Cmo05g00304 CST 155 415 E2F-DP Transcription Factor Family AT1G47870 52.7 2.7e-64 243.4
Cmo04g00407 . 83 286 E2F-DP Transcription Factor Family AT5G02470 55.1 1.5e-59 227.3
Cmo16g00284 . 121 324 E2F-DP Transcription Factor Family AT5G02470 54.6 9.7e-59 224.6
Cmo02g01350 CST 24 461 E2F-DP Transcription Factor Family AT5G22220 52.5 7.3e-101 365.2
Cmo03g01117 CST 50 450 E2F-DP Transcription Factor Family AT5G22220 50.1 1.4e-88 324.3
Cmo20g00168 CST 10 261 E2F-DP Transcription Factor Family AT5G22220 60.2 8.8e-62 235.3
Cmo03g01117 CST 11 460 E2F-DP Transcription Factor Family AT2G36010 52.3 1.6e-111 400.6
Cmo07g00858 CST 353 796 E2F-DP Transcription Factor Family AT2G36010 51.6 8.4e-108 388.3
Cmo02g01350 CST 21 454 E2F-DP Transcription Factor Family AT2G36010 51.0 7.9e-106 381.7
Cmo20g00168 CST 21 261 E2F-DP Transcription Factor Family AT2G36010 56.1 1.7e-63 241.1
Cmo12g00363 CST 153 409 E2F-DP Transcription Factor Family AT1G47870 52.9 3.8e-66 249.6
Cmo05g00304 CST 155 415 E2F-DP Transcription Factor Family AT1G47870 52.7 2.7e-64 243.4
Cmo18g00114 CCT,CST 18 393 E2F-DP Transcription Factor Family AT3G48160 54.6 2.3e-103 373.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001341 2 8 2 2 1 2 3 2 2 2 2 2 2 2 2 3 2 4 3 2 2 1 2 2 2 2 2 5 4 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11473 PF02319 E2F_TDP 5.60E-20 CL0123 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo18g00114 Cmo_Chr18 FPKM 80.687263 81.397278 2.990703 2.288436 1.826303 1.156508 1.44644 7.182498 7.56311 7.539228