Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00114 ATGATCTGCGGCGGAGGCGGAGACGGTGACGGTGACGGTGACACTGACGACTTCATGGCGGCTCTGCCATCCTCTTCTGCGTTACCGGATTCTTCGTCTTCCAGACATCACACTTACAGTAGGAAGCAGAAATCCCTCGGTCTTTTGTGCTCAAATTTTTTGAGCTTGTATAATCATGATGAAGTTCACTCGATTGGGCTTGATGATGCTGCATCGCGATTAGGTGTGGAAAGGCGGCGGATCTATGATATTGTGAATGTCTTGGAGAGCGTCGGGGTTCTCTCCAGAAAGGCGAAAAATCAGTACAGTTGGAATGGGTTTGGGGCAATTCCTAAGGCCTTGCAAGATCTTAAGGAGGAAGGGTTGAAGGATAATTGCAGCGCATCTGATGGCACCGATTATGCAAAAGTCTCAGATGATGAAGATGACGATGAAAGACTTTCCAATCCAACCGGAAGCCAAAACTCAACTGCCACCATGCCCAAATCTTCATCATCTTTAAAAGCCGACAATAGGAGGGAAAAATCATTGGCGCTTCTGACTCAAAATTTTGTTAAGCTATTTATTTGCAGTCATGTGAATATGATTTCCCTTGATGAAGCTGCGAGGCTCTTATTAGGAGATGGCCACAATTCATCAATAATGAGAACAAAAGTGAGGCGGCTATACGACATTGCAAATGTTCTGTCTTCTATGAATCTAATTGAGAAGACGCATACAACTGACACGAGAAAGCCAGCGTTTAGGTGGTTGGGAGTAAGGGGTAAAGTCAAGAATGAGCCTATTGTTCTTCCAGAATCGAAAAAAAGGGCATTTGGAACGGATGTAACAAATGTCAGTTATAAGAAAACTAAGACTGAAAATTCAGCCTATCCGAGTTTAAATCATTGCCTTAACATTCAAAAGCCAGTGCCGTGCGAGAATTCATCACAAGATGACAGCCAGAACAGTCAGGATCAGGAATGTGAGCGAACTTCCAAGAGCTATCAATTTGGACCATTTGCTCCTGTAACAGTAGCTAAAGTTGGTGTCTTAGACAATAACAACATGAGGCGAACTCATGATTGGGAAAGCCTTTCCTCGACATTCCGCCCTCAGTATCACAACCAAGCCTTAAAAGAACTTTTCTCCCATTACGTGGAAGCTTGGAAATCATGGTATTCTGAAGCAGTGAAGAAACCTATACAAATATCTTGA 1197 43.53 MICGGGGDGDGDGDTDDFMAALPSSSALPDSSSSRHHTYSRKQKSLGLLCSNFLSLYNHDEVHSIGLDDAASRLGVERRRIYDIVNVLESVGVLSRKAKNQYSWNGFGAIPKALQDLKEEGLKDNCSASDGTDYAKVSDDEDDDERLSNPTGSQNSTATMPKSSSSLKADNRREKSLALLTQNFVKLFICSHVNMISLDEAARLLLGDGHNSSIMRTKVRRLYDIANVLSSMNLIEKTHTTDTRKPAFRWLGVRGKVKNEPIVLPESKKRAFGTDVTNVSYKKTKTENSAYPSLNHCLNIQKPVPCENSSQDDSQNSQDQECERTSKSYQFGPFAPVTVAKVGVLDNNNMRRTHDWESLSSTFRPQYHNQALKELFSHYVEAWKSWYSEAVKKPIQIS 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 783508 787986 + CmoCh18G001140.1 Cmo18g00114 401887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00114 398 SUPERFAMILY Winged helix DNA-binding domain 40 104 IPR036390 -
Cmo18g00114 398 Pfam E2F/DP family winged-helix DNA-binding domain 42 106 IPR003316 GO:0005667|GO:0006355
Cmo18g00114 398 Pfam E2F/DP family winged-helix DNA-binding domain 174 252 IPR003316 GO:0005667|GO:0006355
Cmo18g00114 398 Gene3D - 36 109 IPR036388 -
Cmo18g00114 398 Gene3D - 167 254 IPR036388 -
Cmo18g00114 398 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 24 390 - -
Cmo18g00114 398 MobiDBLite consensus disorder prediction 1 37 - -
Cmo18g00114 398 MobiDBLite consensus disorder prediction 149 166 - -
Cmo18g00114 398 MobiDBLite consensus disorder prediction 304 326 - -
Cmo18g00114 398 SUPERFAMILY Winged helix DNA-binding domain 174 253 IPR036390 -
Cmo18g00114 398 PANTHER TRANSCRIPTION FACTOR E2F 24 390 IPR015633 GO:0000978|GO:0006357
Cmo18g00114 398 SMART E2F_TDP_2 172 252 IPR003316 GO:0005667|GO:0006355
Cmo18g00114 398 SMART E2F_TDP_2 41 106 IPR003316 GO:0005667|GO:0006355
Cmo18g00114 398 MobiDBLite consensus disorder prediction 124 169 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo10g00164 Cmo18g00114 CCT
Cmo13g00935 Cmo18g00114 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g00114 Cmo-Chr18:783508 Cmo07g00858 Cmo-Chr7:4049258 3.27E-11 dispersed
Cmo10g00164 Cmo-Chr10:743630 Cmo18g00114 Cmo-Chr18:783508 1.20E-07 wgd
Cmo13g00935 Cmo-Chr13:8209724 Cmo18g00114 Cmo-Chr18:783508 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11473 PF02319 E2F_TDP 5.60E-20 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00114 K09391 - csv:101219210 701.819