Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00116 ATGGCTTTCCCTTTTCTTTTTCTCATTGTCCTCTCCGTCCCCATCTCCGTCCACTCGAAACTCACCCTCGGTTATTACCAAAAAACATGTCCCAACTTCGAGAAGATCATCCGCGAGACCGTCACCAATAAACAAATCAATAGTCCAGTTACCGCCGCAGGAACCCTACGACTCTTCTTCCACGACTGCATGGTCGATGGTTGCGATGCCTCCGTCCTCATTTCCTCCAATACCTTCAACAAAGCCGAACGTGAGGCCGATATCAACCATTCCCTCTCTGGGGATGCCTTTGATGTCATCATTCATGCCAAAACTAACCTCGAACTCGTCTGTCCTGGAATTGTATCTTGTTCTGATATCTTAGCTCAGGCGACTCGGGATTTGGTGGTGATGGTCGGAGGTCCGTTCTACAACGTTCGATTAGGGAGAAAAGATGGGATGATATCAAAATTAGAGAATGTGGAAGGGAACCTCCCATTAGTGAGCGATTCAGTGGACCAACTCATTGATATGTTCGCCGGAAAAGGGTTCACGACCAAAGAATTGGTGGCACTTTCCGGCGGCCATACCATCGGATTCTCCCACTGCAAGGAGTTTGCCGGCCGCCTCTTCAATTTCAGCGCCACCGCACCAACTGACCCAGACATTTACCCAAAATTCGCGGAGAAACTCAAGGTCATGTGCGGTAATTTTCAAAAGGACTCCGACATGTCAGCATTCAACGACGTAATGACACCTGGCAAATTTGACAACATGTACTATCAGAATCTGCCACGTGGACTTGGATTATTGGCTACTGACAATGCGCTAGGTAAGGATCCGAGGACCAAGCCGTTTGTGGATATGTACGCCGTGAACCAAACGGCGTTTTTTAACGACTTCGCTCACGCTATGGAGAAACTCAGTGTTCACGGCGTTAAGACGGGAAGGAAAGGGGAAGTTCGGCGAAGGTGTGATCTGTTCAATTCTATTAAGACATAA 981 48.22 MAFPFLFLIVLSVPISVHSKLTLGYYQKTCPNFEKIIRETVTNKQINSPVTAAGTLRLFFHDCMVDGCDASVLISSNTFNKAEREADINHSLSGDAFDVIIHAKTNLELVCPGIVSCSDILAQATRDLVVMVGGPFYNVRLGRKDGMISKLENVEGNLPLVSDSVDQLIDMFAGKGFTTKELVALSGGHTIGFSHCKEFAGRLFNFSATAPTDPDIYPKFAEKLKVMCGNFQKDSDMSAFNDVMTPGKFDNMYYQNLPRGLGLLATDNALGKDPRTKPFVDMYAVNQTAFFNDFAHAMEKLSVHGVKTGRKGEVRRRCDLFNSIKT 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 820299 821394 - CmoCh18G001160.1 Cmo18g00116 401889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00116 326 SUPERFAMILY Heme-dependent peroxidases 21 322 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cmo18g00116 326 Gene3D - 24 322 - -
Cmo18g00116 326 PANTHER PEROXIDASE 41 5 326 - -
Cmo18g00116 326 ProSitePatterns Peroxidases proximal heme-ligand signature. 181 191 IPR019793 -
Cmo18g00116 326 ProSitePatterns Peroxidases active site signature. 52 63 IPR019794 GO:0004601
Cmo18g00116 326 Pfam Peroxidase 40 285 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo18g00116 326 ProSiteProfiles Plant heme peroxidase family profile. 20 322 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo18g00116 326 PRINTS Haem peroxidase superfamily signature 52 66 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo18g00116 326 PRINTS Haem peroxidase superfamily signature 115 132 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo18g00116 326 PRINTS Haem peroxidase superfamily signature 133 145 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo18g00116 326 PRINTS Haem peroxidase superfamily signature 181 196 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo18g00116 326 PRINTS Haem peroxidase superfamily signature 242 257 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cmo18g00116 326 Gene3D Peroxidase, domain 2 159 301 - -
Cmo18g00116 326 PRINTS Plant peroxidase signature 30 49 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo18g00116 326 PRINTS Plant peroxidase signature 54 74 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo18g00116 326 PRINTS Plant peroxidase signature 95 108 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo18g00116 326 PRINTS Plant peroxidase signature 114 124 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo18g00116 326 PRINTS Plant peroxidase signature 133 148 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo18g00116 326 PRINTS Plant peroxidase signature 180 192 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo18g00116 326 PRINTS Plant peroxidase signature 240 255 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo18g00116 326 PRINTS Plant peroxidase signature 256 273 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo18g00116 326 PRINTS Plant peroxidase signature 296 309 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cmo18g00116 326 CDD secretory_peroxidase 20 321 IPR033905 GO:0004601|GO:0042744
Cmo18g00116 326 PANTHER - 5 326 IPR000823 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo11g01084 Cmo-Chr11:6074289 Cmo18g00116 Cmo-Chr18:820299 6.54E-140 dispersed
Cmo11g01203 Cmo-Chr11:7087447 Cmo18g00116 Cmo-Chr18:820299 7.41E-153 dispersed
Cmo14g00639 Cmo-Chr14:3216333 Cmo18g00116 Cmo-Chr18:820299 3.45E-141 dispersed
Cmo10g00159 Cmo-Chr10:719459 Cmo18g00116 Cmo-Chr18:820299 8.60E-155 wgd
Cmo11g00119 Cmo-Chr11:619758 Cmo18g00116 Cmo-Chr18:820299 1.36E-152 wgd
Cmo13g00766 Cmo-Chr13:7421634 Cmo18g00116 Cmo-Chr18:820299 4.82E-47 wgd
Cmo13g00930 Cmo-Chr13:8182766 Cmo18g00116 Cmo-Chr18:820299 0 wgd
Cmo18g00116 Cmo-Chr18:820299 Cmo04g02855 Cmo-Chr4:20358428 4.93E-137 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00116 K00430 - csv:101220163 564.303