Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00124 ATGGCGATTCGAGGGATCGATTTCAAATGGTACGATGGATTCTTCTTGTCAATGCTTGCTACTAGCATAATAATTGTGACTATCAATTGGAGGCGGTACAATACATGTAGATATCCGTTGCACGTATGGATCGTGGTTGATTATACCTCTGTGTTTGCTTTTCGCCTTTTGCTGTTCATAGATAATGCACTTTCAGCTGGAATGGGATTGGATTTTGGATGGCTCCAACAATATGCTCAGTTTTGTGGAAGAGTTGTGGTTCTTTCTATTCTCTCTATATTCCTCTACCCGTTTTTATGTGCGTGGACTGTAATCGGTACCCTATGGTTTCGAGACGCTAAAGACTGTTTGCCCGAAGAAGGACAGAAATGGGGCTTCCTCATTTGGTTGCTTTTCAGCTACTGTGCCCTTCTTTGCATTGCTTGCATGTCAGTTGGAAAGTGGTTAGCGCGTCGACAAGCACACTTGTTACGTGCCCAACAAGGCGTCCCCGTGTCTGAATATGGGGTACTTGTTGATATGATTCGGGTTCCTGATTGGGCGTTTGAAGCTGCAGGACTGGAAATACGAGGCGTTGGGCAAGATGCTATGGGGTACCATCCCGGGCTTTTCTTAACCTCAGCTCAGAGGGAAGCTGTGGAAGCTCTCATCCAAGAACTTCCGAAGTTCGGGCTGAAGGCGGTCCCGACGGATTGCAGTGAATGCCCGATTTGCCTTGAAGAGTTCCATGTAGGGAATGAGGTTCGCGGTATGCCGTGTGCTCACAACTTCCATGTCGAATGTATCGACGAGTGGCTTCGTCTGAATGTCAAATGTCCTCGGTGCCGCTCCTCCATCTTCCCAAATCTCGACCTCAATGCTCTTTCTAACCTGCACTTGGACACAGAACAAACATCTGCCAATCGACCTTCAGCCACTCATTTCGACAGCATCGAGAACGGTAGCTCGCCCGTGCCATCTGCTTCTTGA 969 47.99 MAIRGIDFKWYDGFFLSMLATSIIIVTINWRRYNTCRYPLHVWIVVDYTSVFAFRLLLFIDNALSAGMGLDFGWLQQYAQFCGRVVVLSILSIFLYPFLCAWTVIGTLWFRDAKDCLPEEGQKWGFLIWLLFSYCALLCIACMSVGKWLARRQAHLLRAQQGVPVSEYGVLVDMIRVPDWAFEAAGLEIRGVGQDAMGYHPGLFLTSAQREAVEALIQELPKFGLKAVPTDCSECPICLEEFHVGNEVRGMPCAHNFHVECIDEWLRLNVKCPRCRSSIFPNLDLNALSNLHLDTEQTSANRPSATHFDSIENGSSPVPSAS 322
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
18 879086 883521 + CmoCh18G001240.1 Cmo18g00124 401897
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00124 322 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 281 IPR013083 -
Cmo18g00124 322 SMART ring_2 235 275 IPR001841 -
Cmo18g00124 322 Pfam Ring finger domain 234 276 IPR001841 -
Cmo18g00124 322 MobiDBLite consensus disorder prediction 298 322 - -
Cmo18g00124 322 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 306 - -
Cmo18g00124 322 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 306 IPR044793 GO:0004842|GO:0010182
Cmo18g00124 322 ProSiteProfiles Zinc finger RING-type profile. 235 276 IPR001841 -
Cmo18g00124 322 SUPERFAMILY RING/U-box 219 285 - -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cmo10g00136 Cmo18g00124 CCT
Cmo11g00101 Cmo18g00124 CCT
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g00124 Cmo-Chr18:879086 Cmo06g00159 Cmo-Chr6:852721 1.09E-12 dispersed
Cmo10g00136 Cmo-Chr10:625356 Cmo18g00124 Cmo-Chr18:879086 0 wgd
Cmo11g00101 Cmo-Chr11:539352 Cmo18g00124 Cmo-Chr18:879086 0 wgd
Cmo13g00922 Cmo-Chr13:8143395 Cmo18g00124 Cmo-Chr18:879086 0 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00124 K16284 - csv:101222360 612.453