Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo18g00124 | ATGGCGATTCGAGGGATCGATTTCAAATGGTACGATGGATTCTTCTTGTCAATGCTTGCTACTAGCATAATAATTGTGACTATCAATTGGAGGCGGTACAATACATGTAGATATCCGTTGCACGTATGGATCGTGGTTGATTATACCTCTGTGTTTGCTTTTCGCCTTTTGCTGTTCATAGATAATGCACTTTCAGCTGGAATGGGATTGGATTTTGGATGGCTCCAACAATATGCTCAGTTTTGTGGAAGAGTTGTGGTTCTTTCTATTCTCTCTATATTCCTCTACCCGTTTTTATGTGCGTGGACTGTAATCGGTACCCTATGGTTTCGAGACGCTAAAGACTGTTTGCCCGAAGAAGGACAGAAATGGGGCTTCCTCATTTGGTTGCTTTTCAGCTACTGTGCCCTTCTTTGCATTGCTTGCATGTCAGTTGGAAAGTGGTTAGCGCGTCGACAAGCACACTTGTTACGTGCCCAACAAGGCGTCCCCGTGTCTGAATATGGGGTACTTGTTGATATGATTCGGGTTCCTGATTGGGCGTTTGAAGCTGCAGGACTGGAAATACGAGGCGTTGGGCAAGATGCTATGGGGTACCATCCCGGGCTTTTCTTAACCTCAGCTCAGAGGGAAGCTGTGGAAGCTCTCATCCAAGAACTTCCGAAGTTCGGGCTGAAGGCGGTCCCGACGGATTGCAGTGAATGCCCGATTTGCCTTGAAGAGTTCCATGTAGGGAATGAGGTTCGCGGTATGCCGTGTGCTCACAACTTCCATGTCGAATGTATCGACGAGTGGCTTCGTCTGAATGTCAAATGTCCTCGGTGCCGCTCCTCCATCTTCCCAAATCTCGACCTCAATGCTCTTTCTAACCTGCACTTGGACACAGAACAAACATCTGCCAATCGACCTTCAGCCACTCATTTCGACAGCATCGAGAACGGTAGCTCGCCCGTGCCATCTGCTTCTTGA | 969 | 47.99 | MAIRGIDFKWYDGFFLSMLATSIIIVTINWRRYNTCRYPLHVWIVVDYTSVFAFRLLLFIDNALSAGMGLDFGWLQQYAQFCGRVVVLSILSIFLYPFLCAWTVIGTLWFRDAKDCLPEEGQKWGFLIWLLFSYCALLCIACMSVGKWLARRQAHLLRAQQGVPVSEYGVLVDMIRVPDWAFEAAGLEIRGVGQDAMGYHPGLFLTSAQREAVEALIQELPKFGLKAVPTDCSECPICLEEFHVGNEVRGMPCAHNFHVECIDEWLRLNVKCPRCRSSIFPNLDLNALSNLHLDTEQTSANRPSATHFDSIENGSSPVPSAS | 322 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 18 | 879086 | 883521 | + | CmoCh18G001240.1 | Cmo18g00124 | 401897 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo18g00124 | 322 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 204 | 281 | IPR013083 | - | |
| Cmo18g00124 | 322 | SMART | ring_2 | 235 | 275 | IPR001841 | - | |
| Cmo18g00124 | 322 | Pfam | Ring finger domain | 234 | 276 | IPR001841 | - | |
| Cmo18g00124 | 322 | MobiDBLite | consensus disorder prediction | 298 | 322 | - | - | |
| Cmo18g00124 | 322 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE SIS3 | 1 | 306 | - | - | |
| Cmo18g00124 | 322 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE SIS3 | 1 | 306 | IPR044793 | GO:0004842|GO:0010182 | |
| Cmo18g00124 | 322 | ProSiteProfiles | Zinc finger RING-type profile. | 235 | 276 | IPR001841 | - | |
| Cmo18g00124 | 322 | SUPERFAMILY | RING/U-box | 219 | 285 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cmo10g00136 | Cmo18g00124 | CCT | |
| Cmo11g00101 | Cmo18g00124 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo18g00124 | Cmo-Chr18:879086 | Cmo06g00159 | Cmo-Chr6:852721 | 1.09E-12 | dispersed | |
| Cmo10g00136 | Cmo-Chr10:625356 | Cmo18g00124 | Cmo-Chr18:879086 | 0 | wgd | |
| Cmo11g00101 | Cmo-Chr11:539352 | Cmo18g00124 | Cmo-Chr18:879086 | 0 | wgd | |
| Cmo13g00922 | Cmo-Chr13:8143395 | Cmo18g00124 | Cmo-Chr18:879086 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo18g00124 | K16284 | - | csv:101222360 | 612.453 |