Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00125 ATGAGGAATTTGAACTGGTTCAAGCCAATTTCGATCAATGGAAAGCCTGGGAGGAGGCTTTCTCTTGGGGAGTATGAGCGGGCTGTGTCATGGTCTAAGTATTTGGTGTCGTCTGGTGCAGAGATTAAGGGAGAAGATGAAGAAGAATGGAGTGCGGACATGTCTCAATTGTTTATTGGCTTTAAATTTGCTACAGGAAGGCATAGCAGGATTTACAGAGGTGTGTATAAGCAGAGGGAGGTTGCTATTAAGCTGATAAGCCAGCCTGAGCAGGACGAAAATTTGGCTATCTTTCTTGAGAATCAGTTCATTTCAGAGGTGGCATTGCTGTTTCGATTGAGGCATCCTAATATCATCACTTTCATTGCAGCTTGCAAGAAACCTCCAGTTTTTTGCATCATCACGGAGTACATGTCGGGCGGGTCGTTAAGAAAATACCTCCATCAGCAGGAGCCACATTCCGTTCCACTGAACTTGGTTCTGAAGCTAGCACTCGACATCGCTCGTGGGATGCGGTACCTTCATTCTCAGGGAATACTTCACAGAGATCTCAAATCAGAAAATCTCTTACTTGGTGAAGATATGTGTGTTAAGGTAGCAGATTTCGGTATCTCGTGCCTCGAATCTCAGTGCGGAAGCGCAAAGGGATTCACGGGAACATACCGGTGGATGGCACCCGAAATGATCAAAGAAAAACATCACACCAAGAAGGTTGATGTTTATAGCTTTGGCATTGTCTTGTGGGAGCTCTTAACTGCATTGACACCATTTGATAACATGACTCCTGAACAAGCAGCATTTGCAGTATGCCAGAAGAATGCAAGACCCCCTCTACCTTCGGCGTGCCCACAGGCATTTCGTCGCATGATCAAGAGATGCTGGTCGAAAAATCCCGACAAGCGACCACATTTTGACGAGATCGTTTCAAATTTGGAAACTTATATGGAGGCTTATAATGAAGATCCAGAATTTTTCTGTCACTATGTGCCTTCATCTAGATATACTACTGCTTTAAAATGCTTACCAACATTGTCAGGACCTACGGGCCAAGGGACAGTCTCAAGTAGACAGTTTCTATGGGGCGAGACCTCCCAAACGGTAATGGAGGCGTGCAAAGGTTTCCTCGGGCCAGACGGAGATTGGCCCTCGAGTGCAAAGGCAGAAGGGAGCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGGTCCGACGGTGCCGAGTGGAAGAGTTGTGGCTCAATGGATAAAAGTGACTCTAGGGATAACAGGCTGA 1287 46.78 MRNLNWFKPISINGKPGRRLSLGEYERAVSWSKYLVSSGAEIKGEDEEEWSADMSQLFIGFKFATGRHSRIYRGVYKQREVAIKLISQPEQDENLAIFLENQFISEVALLFRLRHPNIITFIAACKKPPVFCIITEYMSGGSLRKYLHQQEPHSVPLNLVLKLALDIARGMRYLHSQGILHRDLKSENLLLGEDMCVKVADFGISCLESQCGSAKGFTGTYRWMAPEMIKEKHHTKKVDVYSFGIVLWELLTALTPFDNMTPEQAAFAVCQKNARPPLPSACPQAFRRMIKRCWSKNPDKRPHFDEIVSNLETYMEAYNEDPEFFCHYVPSSRYTTALKCLPTLSGPTGQGTVSSRQFLWGETSQTVMEACKGFLGPDGDWPSSAKAEGSLTARPTRRAGTKVGLSGPTVPSGRVVAQWIKVTLGITG 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 888021 893283 + CmoCh18G001250.1 Cmo18g00125 401898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00125 428 ProSiteProfiles Protein kinase domain profile. 57 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00125 428 Gene3D Phosphorylase Kinase; domain 1 46 139 - -
Cmo18g00125 428 Pfam Family of unknown function (DUF6467) 363 428 IPR045532 -
Cmo18g00125 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 179 191 IPR008271 GO:0004672|GO:0006468
Cmo18g00125 428 PANTHER SERINE-THREONINE PROTEIN KINASE 1 333 - -
Cmo18g00125 428 PANTHER SERINE/THREONINE-KINASE HT1-LIKE PROTEIN 1 333 - -
Cmo18g00125 428 MobiDBLite consensus disorder prediction 379 407 - -
Cmo18g00125 428 Pfam Protein tyrosine and serine/threonine kinase 62 311 IPR001245 GO:0004672|GO:0006468
Cmo18g00125 428 SMART serkin_6 57 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo18g00125 428 CDD STKc_MAP3K-like 66 311 - -
Cmo18g00125 428 Gene3D Transferase(Phosphotransferase) domain 1 140 327 - -
Cmo18g00125 428 PRINTS Tyrosine kinase catalytic domain signature 173 191 IPR001245 GO:0004672|GO:0006468
Cmo18g00125 428 PRINTS Tyrosine kinase catalytic domain signature 219 229 IPR001245 GO:0004672|GO:0006468
Cmo18g00125 428 PRINTS Tyrosine kinase catalytic domain signature 282 304 IPR001245 GO:0004672|GO:0006468
Cmo18g00125 428 PRINTS Tyrosine kinase catalytic domain signature 238 260 IPR001245 GO:0004672|GO:0006468
Cmo18g00125 428 PRINTS Tyrosine kinase catalytic domain signature 135 148 IPR001245 GO:0004672|GO:0006468
Cmo18g00125 428 SUPERFAMILY Protein kinase-like (PK-like) 43 311 IPR011009 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo13g00921 Cmo18g00125 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo07g00236 Cmo-Chr7:1172838 Cmo18g00125 Cmo-Chr18:888021 2.00E-113 dispersed
Cmo07g00331 Cmo-Chr7:1551809 Cmo18g00125 Cmo-Chr18:888021 3.78E-140 dispersed
Cmo18g00125 Cmo-Chr18:888021 Cmo18g00354 Cmo-Chr18:2315755 2.97E-96 dispersed
Cmo13g00921 Cmo-Chr13:8137683 Cmo18g00125 Cmo-Chr18:888021 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75035 PF07714 PK_Tyr_Ser-Thr 3.10E-66 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00125 - - csv:101222762 669.077